CMJ_chr6_009410.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr6_009410.1 vs. ExPASy TrEMBL
Match: A0A067EA12|A0A067EA12_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g041295mg PE=4 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 6.781e-25 Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 0 Query: 2 SSLYRERHYGYGGCEGQMDDVQVENLIVEVEGKLESARDNAKTADSCDRFKRAPENQ 58
SSL++ER+YGYGGCEGQMDDVQVENLIVEVEGKLE+A DNAKTADSCDRFKRA ENQ
Sbjct: 138 SSLHQERNYGYGGCEGQMDDVQVENLIVEVEGKLENAGDNAKTADSCDRFKRALENQ 194
BLAST of CMJ_chr6_009410.1 vs. ExPASy TrEMBL
Match: A0A067EBC2|A0A067EBC2_CITSI (HTH myb-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g042922mg PE=4 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 3.118e-22 Identity = 48/62 (77.42%), Postives = 56/62 (90.32%), Query Frame = 0 Query: 60 DGETIPVEDLGRVDDSGHEKIVEDQVQEEPHTACCVGEEYVVDILVNLSKGNIPDSEKLNEE 121
DGE IP+EDLG VD SGHEKI EDQ+QEEP+TACCVGEE+VVDIL+NL KG+IPD+EKL E+
Sbjct: 208 DGEGIPLEDLGCVDGSGHEKIAEDQLQEEPYTACCVGEEFVVDILLNLWKGDIPDTEKLKEQ 269 HSP 2 Score: 87.4261 bits (215), Expect = 1.056e-16 Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = 0 Query: 1 MSSLYRERHYGYGGCEGQMDDVQVENLIVEVEGKLESARDNAKTADSCDRFKRAPENQ 58
MSSL++ER+Y YGGCE + DDVQVENL EVEG+LE+ DN KTADSCD+FKRA ENQ
Sbjct: 35 MSSLHQERNYSYGGCEDRRDDVQVENLSEEVEGELENDGDNTKTADSCDKFKRALENQ 92
BLAST of CMJ_chr6_009410.1 vs. ExPASy TrEMBL
Match: A0A2H5QJI3|A0A2H5QJI3_CITUN (Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_236210 PE=4 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.008e-20 Identity = 63/136 (46.32%), Postives = 83/136 (61.03%), Query Frame = 0 Query: 1 MSSLYRERHYGYGGCEGQMDDVQVENLIVEVEGKLESARDNAKTADSCDRFKRAPENQKDGETIPVEDLGRVDDS-----GHEKIVEDQVQEEP--HTACCV--------GEEYVVDILVNLSKGNIPDSEKLNEE 121
+SSL+ ER+YGYGGCE +MDDVQVE+LIVEVE +LE+ DNAKTADSCDRFKRA E+Q D + ++++S G +V +E P C GE V+ L ++ +IPD+EKL EE
Sbjct: 138 ISSLHEERNYGYGGCEDRMDDVQVEDLIVEVEFELENDGDNAKTADSCDRFKRALESQSDPLAVHSHPGDKINNSRDKTPGIGSLVNYTSKERPSEENVCETYELELLEDGEMIPVEDLGHVDDRDIPDTEKLREE 273
BLAST of CMJ_chr6_009410.1 vs. ExPASy TrEMBL
Match: A0A1S8ACZ2|A0A1S8ACZ2_CITLI (Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (Fragment) OS=Citrus limon OX=2708 PE=4 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.027e-19 Identity = 44/56 (78.57%), Postives = 51/56 (91.07%), Query Frame = 0 Query: 60 DGETIPVEDLGRVDDSGHEKIVEDQVQEEPHTACCVGEEYVVDILVNLSKGNIPDS 115
DGE IP+EDLG VD SGHEKI EDQ+QEEP+TACCVGEE+VVDIL+NL KG+IPD+
Sbjct: 279 DGEGIPLEDLGCVDGSGHEKIAEDQLQEEPYTACCVGEEFVVDILLNLWKGDIPDT 334 HSP 2 Score: 85.8853 bits (211), Expect = 3.468e-16 Identity = 55/131 (41.98%), Postives = 66/131 (50.38%), Query Frame = 0 Query: 1 MSSLYRERHYGYGGCEGQMDDVQVENLIVEVEGKLESARDNAKTADSCDRFKRAPENQ--------------------------------------------------KDGETIPVEDLGRVDDSGHEKIV 81
MSSL++ER+Y YGGCE + DDVQV+NL EVEG+LE+ DN KTADSCD+FKRA ENQ +DG+ IP+EDLG DDSG E V
Sbjct: 106 MSSLHQERNYSYGGCEDRRDDVQVKNLSEEVEGELENDGDNTKTADSCDKFKRALENQSNLLAVHSHTGDKINHGREKTPGIESLVNYTSKERPNEENVCETHELELLEDGKGIPLEDLGCDDDSGREDNV 236
BLAST of CMJ_chr6_009410.1 vs. ExPASy TrEMBL
Match: A0A2H5P710|A0A2H5P710_CITUN (HTH myb-type domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_107720 PE=4 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.430e-19 Identity = 44/56 (78.57%), Postives = 51/56 (91.07%), Query Frame = 0 Query: 60 DGETIPVEDLGRVDDSGHEKIVEDQVQEEPHTACCVGEEYVVDILVNLSKGNIPDS 115
DGE IP+EDLG VD SGHEKI EDQ+QEEP+TACCVGEE+VVDIL+NL KG+IPD+
Sbjct: 311 DGEGIPLEDLGCVDGSGHEKIAEDQLQEEPYTACCVGEEFVVDILLNLWKGDIPDT 366 HSP 2 Score: 85.5001 bits (210), Expect = 4.767e-16 Identity = 55/131 (41.98%), Postives = 66/131 (50.38%), Query Frame = 0 Query: 1 MSSLYRERHYGYGGCEGQMDDVQVENLIVEVEGKLESARDNAKTADSCDRFKRAPENQ--------------------------------------------------KDGETIPVEDLGRVDDSGHEKIV 81
MSSL++ER+Y YGGCE + DDVQV+NL EVEG+LE+ DN KTADSCD+FKRA ENQ +DG+ IP+EDLG DDSG E V
Sbjct: 138 MSSLHQERNYSYGGCEDRRDDVQVKNLSEEVEGELENDGDNTKTADSCDKFKRALENQSNLLAVHSHTGDKINHGREKTPGIESLVNYTSKERPNEENVCETHELELLEDGKGIPLEDLGCDDDSGREDNV 268
BLAST of CMJ_chr6_009410.1 vs. ExPASy TrEMBL
Match: A0A067DM41|A0A067DM41_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g044718mg PE=4 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 2.961e-19 Identity = 45/60 (75.00%), Postives = 53/60 (88.33%), Query Frame = 0 Query: 1 MSSLYRERHYGYGGCEGQMDDVQVENLIVEVEGKLESARDNAKTADSCDRFKRAPENQKD 60
+SSL+ ER+YGYGGCE +MDDVQVE+LIVEVE +LE+ DNAKTADSCDRFKRA E+Q D
Sbjct: 132 ISSLHEERNYGYGGCEDRMDDVQVEDLIVEVEFELENDGDNAKTADSCDRFKRALESQSD 191 The following BLAST results are available for this feature:
BLAST of CMJ_chr6_009410.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 6 Position : 0 Zoom : x 1
BLAST of CMJ_chr6_009410.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr6_009410.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr6_009410.1_cmj_v1 ID=CMJ_chr6_009410.1_cmj_v1; Name=CMJ_chr6_009410.1; organism=Citrus maxima; type=mRNA; length=534bpback to top protein sequence of CMJ_chr6_009410.1_cmj_v1 >CMJ_chr6_009410.1_cmj_v1 ID=CMJ_chr6_009410.1_cmj_v1; Name=CMJ_chr6_009410.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=178bpback to top mRNA from alignment at chr6:18613864..18615001+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1138bp; location=Sequence derived from: chr6:18613864..18615001+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr6:18613864..18615001+ >CMJ_chr6_009410.1_cmj_v1 ID=CMJ_chr6_009410.1_cmj_v1; Name=CMJ_chr6_009410.1; organism=Citrus maxima; type=CDS; length=534bp; location=Sequence derived from: chr6:18613864..18615001+ (Citrus maximaback to top |