CMJ_chr6_010800.1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr6_010800.1 vs. ExPASy TrEMBL
Match: V4SPZ8|V4SPZ8_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013769mg PE=4 SV=1) HSP 1 Score: 315.079 bits (806), Expect = 3.177e-107 Identity = 175/196 (89.29%), Postives = 186/196 (94.90%), Query Frame = 0 Query: 1 MGSKGNDSRGSKPMRRRSQARRMLRDSVINMAEARREIVQALQLHRSSTRTAAATSATVAASATTSSSA-QCCYYSLTEAMPIPEPIWSTTAPTIPAAPSATAAAAMESLEFEWGESQAAAYNWWLGFLKTLDGKISNVENYSKYPHSRVFGCQDNLKLGEGKFAVGASDDQQNTAPDEWLTFPTSDDQQGDHTTT 195 MGSKGNDSRGSKPMRRRSQ RRML+DSVINMAEARREIVQALQLHRSSTRTAAA +AT +++ T+SS+ QCCYYSLTEAMPIPEPIWSTTAPTIPAAPSATAAAAMESLEFEWG+SQAAAYNWWLGFLKTLDGKI+NVENYSKYPHSRVFGCQDNLKLGEGKFAV ASDDQQNTAPDEWLTFPTSDDQQ + T + Sbjct: 1 MGSKGNDSRGSKPMRRRSQTRRMLQDSVINMAEARREIVQALQLHRSSTRTAAAAAATTTSASATTSSSAQCCYYSLTEAMPIPEPIWSTTAPTIPAAPSATAAAAMESLEFEWGQSQAAAYNWWLGFLKTLDGKINNVENYSKYPHSRVFGCQDNLKLGEGKFAVDASDDQQNTAPDEWLTFPTSDDQQAEITIS 196
BLAST of CMJ_chr6_010800.1 vs. ExPASy TrEMBL
Match: A0A7J9IRQ9|A0A7J9IRQ9_9ROSI (Uncharacterized protein (Fragment) OS=Gossypium armourianum OX=34283 GN=Goarm_020971 PE=4 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 2.905e-41 Identity = 86/182 (47.25%), Postives = 112/182 (61.54%), Query Frame = 0 Query: 11 SKP-MRRRSQARRMLRDSVINMAEARREIVQALQLHRSSTRTAAATSATVAASATTSSSAQCCYYSLTEAMPIPEPIWSTTAPTIPAAPSATAAAAMESLE-FEWGESQAAAYNWWLGFLKTLDGKISNVENYSKYPH--SRVFGCQDNLKLGEGKFAVGA-SDDQQNTAPDEWLTFPTSDD 187 SKP MRRRS+ R+ + VINM EARRE+ AL LHRS T T +S+ V + S + CC YSL EAMP PEPIWSTTAP++PA P +E+++ EWGE+QAA+Y WWLGFL+ LDG +N+ + +K P +D+ L G++ VG QN DEWL FP + D Sbjct: 10 SKPLMRRRSRTRKTGQGGVINMDEARREVAHALHLHRS-TPTPPLSSSGVGNPSYYSYAKSCCCYSLVEAMPPPEPIWSTTAPSLPATPPPD----LETVQILEWGENQAASYAWWLGFLRGLDGN-NNITSKTKDPPFVDNAVSLKDHSPLLLGQYEVGEWGLTDQNACLDEWLMFPPTQD 185
BLAST of CMJ_chr6_010800.1 vs. ExPASy TrEMBL
Match: A0A1Q3CKX2|A0A1Q3CKX2_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_24305 PE=4 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 3.555e-41 Identity = 95/211 (45.02%), Postives = 125/211 (59.24%), Query Frame = 0 Query: 1 MGSKGNDSRGSKPMRRRSQARRMLRDSVINMAEARREIVQALQLHRSSTRTAAA---------------TSATVAASAT--------TSSSAQCCYYSLTEAMPIPEPIWSTTAPTIPAAPSATAAAAMESLEFEWGESQAAAYNWWLGFLKTLDGKISNVENYSKYPHSRVFGC--QDNLKLGEGKFAVGASDDQQNTAPDEWLTFPTSD 186 M S +D KPMRRRS +R + ++SVINMAEARREI AL LHRSS+ + A+ TS + + ++ S+Q C YSL E+MP+PEPIWSTTAP+ AAP+ ME+LEF WGE+QA++Y WWLGFL+ LD K N+EN K P+ Q+ KL E + SD N++PDEWL FPT++ Sbjct: 1 MDSHNSDDSPRKPMRRRSHSRNVQKNSVINMAEARREIAHALLLHRSSSSSLASASSTSSSSSFVEKELTSNNILGNICNFGIYNNPSAISSQHC-YSLMESMPLPEPIWSTTAPSTHAAPT----TPMEALEFVWGENQASSYTWWLGFLENLDAK--NIENL-KCPNVDNIESQHQNGSKLKEAPI-LSTSD--HNSSPDEWLLFPTNE 200
BLAST of CMJ_chr6_010800.1 vs. ExPASy TrEMBL
Match: A0A7J9KTZ4|A0A7J9KTZ4_GOSSC (Uncharacterized protein (Fragment) OS=Gossypium schwendimanii OX=34291 GN=Goshw_023424 PE=4 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 2.574e-40 Identity = 85/182 (46.70%), Postives = 111/182 (60.99%), Query Frame = 0 Query: 11 SKP-MRRRSQARRMLRDSVINMAEARREIVQALQLHRSSTRTAAATSATVAASATTSSSAQCCYYSLTEAMPIPEPIWSTTAPTIPAAPSATAAAAMESLE-FEWGESQAAAYNWWLGFLKTLDGKISNVENYSKYPH--SRVFGCQDNLKLGEGKFAVGA-SDDQQNTAPDEWLTFPTSDD 187 SKP MRRRS+ R+ + VINM EARRE+ AL LHRS T T +S+ + S + CC YSL EAMP PEPIWSTTAP++PA P +E+++ EWGE+QAA+Y WWLGFL+ LDG +N+ + +K P +D+ L G++ VG QN DEWL FP + D Sbjct: 10 SKPLMRRRSRTRKTGQGGVINMDEARREVAHALHLHRS-TPTPPLSSSGEGNPSYYSYAKSCCCYSLVEAMPPPEPIWSTTAPSLPATPPPD----LETVQILEWGENQAASYAWWLGFLRALDGN-NNIMSKTKDPPFVDNAVSLKDHSPLLLGQYEVGEWGITDQNACLDEWLMFPPTQD 185
BLAST of CMJ_chr6_010800.1 vs. ExPASy TrEMBL
Match: A0A2P5RSE6|A0A2P5RSE6_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA36179 PE=4 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 3.504e-40 Identity = 85/182 (46.70%), Postives = 110/182 (60.44%), Query Frame = 0 Query: 11 SKP-MRRRSQARRMLRDSVINMAEARREIVQALQLHRSSTRTAAATSATVAASATTSSSAQCCYYSLTEAMPIPEPIWSTTAPTIPAAPSATAAAAMESLE-FEWGESQAAAYNWWLGFLKTLDGKISNVENYSKYPH--SRVFGCQDNLKLGEGKFAVGA-SDDQQNTAPDEWLTFPTSDD 187 SKP MRRRS+ R+ + VINM EARRE+ AL LHRS T T S+ V + S + CC YSL EAMP PEPIWSTTAP++PA P +E+++ EWGE+QAA+Y WWLGFL+ LDG +N+ + +K P +D+ L G++ G QN DEWL FP + D Sbjct: 10 SKPLMRRRSRTRKTGQGGVINMDEARREVAHALHLHRS-TPTPPLPSSGVGNPSYYSYAKSCCCYSLVEAMPPPEPIWSTTAPSLPATPPPD----LETVQILEWGENQAASYAWWLGFLRALDGN-NNIMSKTKDPPFVDNAVSLKDHSPLLLGQYEAGEWGLTDQNACLDEWLMFPPTQD 185
BLAST of CMJ_chr6_010800.1 vs. ExPASy TrEMBL
Match: A0A7J8NX26|A0A7J8NX26_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=Gorai_023751 PE=4 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 3.504e-40 Identity = 85/182 (46.70%), Postives = 110/182 (60.44%), Query Frame = 0 Query: 11 SKP-MRRRSQARRMLRDSVINMAEARREIVQALQLHRSSTRTAAATSATVAASATTSSSAQCCYYSLTEAMPIPEPIWSTTAPTIPAAPSATAAAAMESLE-FEWGESQAAAYNWWLGFLKTLDGKISNVENYSKYPH--SRVFGCQDNLKLGEGKFAVGA-SDDQQNTAPDEWLTFPTSDD 187 SKP MRRRS+ R+ + VINM EARRE+ AL LHRS T T S+ V + S + CC YSL EAMP PEPIWSTTAP++PA P +E+++ EWGE+QAA+Y WWLGFL+ LDG +N+ + +K P +D+ L G++ G QN DEWL FP + D Sbjct: 10 SKPLMRRRSRTRKTGQGGVINMDEARREVAHALHLHRS-TPTPPLPSSGVGNPSYYSYAKSCCCYSLVEAMPPPEPIWSTTAPSLPATPPPD----LETVQILEWGENQAASYAWWLGFLRALDGN-NNIMSKTKDPPFVDNAVSLKDHSPLLLGQYEAGEWGLTDQNACLDEWLMFPPTQD 185
BLAST of CMJ_chr6_010800.1 vs. ExPASy TrEMBL
Match: A0A5J5STS5|A0A5J5STS5_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D01G260200v1 PE=4 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 5.651e-40 Identity = 85/182 (46.70%), Postives = 110/182 (60.44%), Query Frame = 0 Query: 11 SKP-MRRRSQARRMLRDSVINMAEARREIVQALQLHRSSTRTAAATSATVAASATTSSSAQCCYYSLTEAMPIPEPIWSTTAPTIPAAPSATAAAAMESLE-FEWGESQAAAYNWWLGFLKTLDGKISNVENYSKYPH--SRVFGCQDNLKLGEGKFAVGA-SDDQQNTAPDEWLTFPTSDD 187 SKP MRRRS+ R+ + VINM EARRE+ AL LHRS T T S+ V + S + CC YSL EAMP PEPIWSTTAP++PA P +E+++ EWGE+QAA+Y WWLGFL+ LDG +N+ + +K P +D+ L G++ G QN DEWL FP + D Sbjct: 31 SKPLMRRRSRTRKTGQGGVINMDEARREVAHALHLHRS-TPTPPLPSSGVGNPSYYSYAKSCCCYSLVEAMPPPEPIWSTTAPSLPATPPPD----LETVQILEWGENQAASYAWWLGFLRALDGN-NNIMSKTKDPPFVDNAVSLKDHSPLLLGQYEAGEWGLTDQNACLDEWLMFPPTQD 206
BLAST of CMJ_chr6_010800.1 vs. ExPASy TrEMBL
Match: A0A0D2RD93|A0A0D2RD93_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G267200 PE=4 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 5.651e-40 Identity = 85/182 (46.70%), Postives = 110/182 (60.44%), Query Frame = 0 Query: 11 SKP-MRRRSQARRMLRDSVINMAEARREIVQALQLHRSSTRTAAATSATVAASATTSSSAQCCYYSLTEAMPIPEPIWSTTAPTIPAAPSATAAAAMESLE-FEWGESQAAAYNWWLGFLKTLDGKISNVENYSKYPH--SRVFGCQDNLKLGEGKFAVGA-SDDQQNTAPDEWLTFPTSDD 187 SKP MRRRS+ R+ + VINM EARRE+ AL LHRS T T S+ V + S + CC YSL EAMP PEPIWSTTAP++PA P +E+++ EWGE+QAA+Y WWLGFL+ LDG +N+ + +K P +D+ L G++ G QN DEWL FP + D Sbjct: 31 SKPLMRRRSRTRKTGQGGVINMDEARREVAHALHLHRS-TPTPPLPSSGVGNPSYYSYAKSCCCYSLVEAMPPPEPIWSTTAPSLPATPPPD----LETVQILEWGENQAASYAWWLGFLRALDGN-NNIMSKTKDPPFVDNAVSLKDHSPLLLGQYEAGEWGLTDQNACLDEWLMFPPTQD 206
BLAST of CMJ_chr6_010800.1 vs. ExPASy TrEMBL
Match: A0A5D2MDX2|A0A5D2MDX2_GOSTO (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D01G280000v1 PE=4 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 5.651e-40 Identity = 85/182 (46.70%), Postives = 110/182 (60.44%), Query Frame = 0 Query: 11 SKP-MRRRSQARRMLRDSVINMAEARREIVQALQLHRSSTRTAAATSATVAASATTSSSAQCCYYSLTEAMPIPEPIWSTTAPTIPAAPSATAAAAMESLE-FEWGESQAAAYNWWLGFLKTLDGKISNVENYSKYPH--SRVFGCQDNLKLGEGKFAVGA-SDDQQNTAPDEWLTFPTSDD 187 SKP MRRRS+ R+ + VINM EARRE+ AL LHRS T T S+ V + S + CC YSL EAMP PEPIWSTTAP++PA P +E+++ EWGE+QAA+Y WWLGFL+ LDG +N+ + +K P +D+ L G++ G QN DEWL FP + D Sbjct: 31 SKPLMRRRSRTRKTGQGGVINMDEARREVAHALHLHRS-TPTPPLPSSGVGNPSYYSYAKSCCCYSLVEAMPPPEPIWSTTAPSLPATPPPD----LETVQILEWGENQAASYAWWLGFLRALDGN-NNIMSKTKDPPFVDNAVSLKDHSPLLLGQYEAGEWGLTDQNACLDEWLMFPPTQD 206
BLAST of CMJ_chr6_010800.1 vs. ExPASy TrEMBL
Match: A0A7J8W7K3|A0A7J8W7K3_9ROSI (Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_024565 PE=4 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 5.782e-40 Identity = 82/174 (47.13%), Postives = 107/174 (61.49%), Query Frame = 0 Query: 14 MRRRSQARRMLRDSVINMAEARREIVQALQLHRSSTRTAAATSATVAASATTSSSAQCCYYSLTEAMPIPEPIWSTTAPTIPAAPSATAAAAMESLE-FEWGESQAAAYNWWLGFLKTLDGKISNVENYSKYPH--SRVFGCQDNLKLGEGKFAVGA-SDDQQNTAPDEWLTFP 183 MRRRS+ R+ + VINM EARRE+ AL LHRS T T +S+ V + S + CC YSL EAMP PEPIWSTTAP++PA P +E+++ EWGE+QAA+Y WWLGFL+ LDG +N+ + +K P +D+ L G++ VG QN DEWL FP Sbjct: 14 MRRRSRTRKTGQGGVINMDEARREVAHALHLHRS-TPTPPLSSSGVGNPSYYSYAKSCCCYSLVEAMPHPEPIWSTTAPSLPATPPPD----LETVQILEWGENQAASYAWWLGFLRALDGN-NNIMSKTKDPPFVDNAVSLKDHSPLLLGQYEVGEWGLTDQNACLDEWLMFP 181 The following BLAST results are available for this feature:
BLAST of CMJ_chr6_010800.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr6_010800.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr6_010800.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr6_010800.1_cmj_v1 ID=CMJ_chr6_010800.1_cmj_v1; Name=CMJ_chr6_010800.1; organism=Citrus maxima; type=mRNA; length=600bpback to top protein sequence of CMJ_chr6_010800.1_cmj_v1 >CMJ_chr6_010800.1_cmj_v1 ID=CMJ_chr6_010800.1_cmj_v1; Name=CMJ_chr6_010800.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=200bpback to top mRNA from alignment at chr6:19515650..19516642+ Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=993bp; location=Sequence derived from: chr6:19515650..19516642+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr6:19515650..19516642+ >CMJ_chr6_010800.1_cmj_v1 ID=CMJ_chr6_010800.1_cmj_v1; Name=CMJ_chr6_010800.1; organism=Citrus maxima; type=CDS; length=600bp; location=Sequence derived from: chr6:19515650..19516642+ (Citrus maximaback to top |