Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
CMJ_chr6_022090.1.exon1 CMJ_chr6_022090.1.exon1_cmj_v1 Citrus maxima exon CMJ_chr6_022090.1.exon2 CMJ_chr6_022090.1.exon2_cmj_v1 Citrus maxima exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
CMJ_chr6_022090.1.cds.1 CMJ_chr6_022090.1.cds.1_cmj_v1 Citrus maxima CDS CMJ_chr6_022090.1.cds.2 CMJ_chr6_022090.1.cds.2_cmj_v1 Citrus maxima CDS
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
CMJ_chr6_022090.1_cmj_v1 CMJ_chr6_022090.1_cmj_v1 Citrus maxima polypeptide CMJ_chr6_022090.1_cmj_v1 CMJ_chr6_022090.1_cmj_v1-protein Citrus maxima polypeptide
Homology
BLAST of CMJ_chr6_022090.1 vs. ExPASy TrEMBL
Match:
V4SA13|V4SA13_CITCL (C2H2-type domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10013440mg PE=4 SV=1)
HSP 1 Score: 226.868 bits (577), Expect = 7.202e-67
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0
Query: 1 MERSNFLRLCEERHEYLIKQKAVEAVDGICGDETKRREKNPESMKEAFASLLRGRQEVLEEGNGNATSDQFELEFIFNLLETDPVTAYQFEEKPIMHESLNPSDDCLS 108
MERSNFLRLCEERHEYLIKQKAVEAVDGICGDETKRREKNPESMKEAFASLLRGRQEVLEEGNGNATSDQFELEFIFNLLETDPVTAYQFEEKPIMHESLNPSDDCLS
Sbjct: 370 MERSNFLRLCEERHEYLIKQKAVEAVDGICGDETKRREKNPESMKEAFASLLRGRQEVLEEGNGNATSDQFELEFIFNLLETDPVTAYQFEEKPIMHESLNPSDDCLS 477
BLAST of CMJ_chr6_022090.1 vs. ExPASy TrEMBL
Match:
V4TLG9|V4TLG9_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10018876mg PE=4 SV=1)
HSP 1 Score: 96.2857 bits (238), Expect = 1.166e-20
Identity = 55/109 (50.46%), Postives = 73/109 (66.97%), Query Frame = 0
Query: 1 MERSNFLRLCEERHEYLIKQKAVEAVDGICGDETKRREKNPESMKEAFASLLRGRQEVLEEG-NGNATSDQFELEFIFNLLETD-PVTAYQFEEKPIMHESLNPSDDCL 107
MERS F+++ EER + K A+EAV+GI DE KRR++NPE + F SLLR R + LEE + A + QFELEFI N+LETD V A+QFE +HE+ N SD+ +
Sbjct: 531 MERSKFVKMYEERRKLSKKWDALEAVNGIFADEKKRRDENPEYVWRTFESLLRERLKELEERIDAAAAAYQFELEFILNVLETDRAVAAFQFENTSRVHENWNQSDEYV 639
BLAST of CMJ_chr6_022090.1 vs. ExPASy TrEMBL
Match:
A0A2H5PM33|A0A2H5PM33_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_148980 PE=4 SV=1)
HSP 1 Score: 95.9005 bits (237), Expect = 1.774e-20
Identity = 55/107 (51.40%), Postives = 72/107 (67.29%), Query Frame = 0
Query: 1 MERSNFLRLCEERHEYLIKQKAVEAVDGICGDETKRREKNPESMKEAFASLLRGRQEVLEEG-NGNATSDQFELEFIFNLLETD-PVTAYQFEEKPIMHESLNPSDD 105
MERS F+++ EER + K A+EAV+GI DE KRR++NPE + F SLLR R + LEE + A + QFELEFI N+LETD V A+QFE +HE+ N SD+
Sbjct: 581 MERSKFVKMYEERRKLSKKWDALEAVNGIFADEKKRRDENPEYVWRTFESLLRERLKELEERIDAAAAAYQFELEFILNVLETDRAVAAFQFENTSRVHENWNQSDE 687
BLAST of CMJ_chr6_022090.1 vs. ExPASy TrEMBL
Match:
A0A2H5PM24|A0A2H5PM24_CITUN (USP domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_148980 PE=4 SV=1)
HSP 1 Score: 95.5153 bits (236), Expect = 2.151e-20
Identity = 55/107 (51.40%), Postives = 72/107 (67.29%), Query Frame = 0
Query: 1 MERSNFLRLCEERHEYLIKQKAVEAVDGICGDETKRREKNPESMKEAFASLLRGRQEVLEEG-NGNATSDQFELEFIFNLLETD-PVTAYQFEEKPIMHESLNPSDD 105
MERS F+++ EER + K A+EAV+GI DE KRR++NPE + F SLLR R + LEE + A + QFELEFI N+LETD V A+QFE +HE+ N SD+
Sbjct: 531 MERSKFVKMYEERRKLSKKWDALEAVNGIFADEKKRRDENPEYVWRTFESLLRERLKELEERIDAAAAAYQFELEFILNVLETDRAVAAFQFENTSRVHENWNQSDE 637
BLAST of CMJ_chr6_022090.1 vs. ExPASy TrEMBL
Match:
A0A067EU97|A0A067EU97_CITSI (USP domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g000686mg PE=4 SV=1)
HSP 1 Score: 95.5153 bits (236), Expect = 2.173e-20
Identity = 55/107 (51.40%), Postives = 72/107 (67.29%), Query Frame = 0
Query: 1 MERSNFLRLCEERHEYLIKQKAVEAVDGICGDETKRREKNPESMKEAFASLLRGRQEVLEEG-NGNATSDQFELEFIFNLLETD-PVTAYQFEEKPIMHESLNPSDD 105
MERS F+++ EER + K A+EAV+GI DE KRR++NPE + F SLLR R + LEE + A + QFELEFI N+LETD V A+QFE +HE+ N SD+
Sbjct: 581 MERSKFVKMYEERRKLSKKWDALEAVNGIFADEKKRRDENPEYVWRTFESLLRERLKELEERIDAAAAAYQFELEFILNVLETDRAVAAFQFENTSRVHENWNQSDE 687
BLAST of CMJ_chr6_022090.1 vs. ExPASy TrEMBL
Match:
A0A2H5PM18|A0A2H5PM18_CITUN (USP domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_148980 PE=4 SV=1)
HSP 1 Score: 95.5153 bits (236), Expect = 2.216e-20
Identity = 55/107 (51.40%), Postives = 72/107 (67.29%), Query Frame = 0
Query: 1 MERSNFLRLCEERHEYLIKQKAVEAVDGICGDETKRREKNPESMKEAFASLLRGRQEVLEEG-NGNATSDQFELEFIFNLLETD-PVTAYQFEEKPIMHESLNPSDD 105
MERS F+++ EER + K A+EAV+GI DE KRR++NPE + F SLLR R + LEE + A + QFELEFI N+LETD V A+QFE +HE+ N SD+
Sbjct: 581 MERSKFVKMYEERRKLSKKWDALEAVNGIFADEKKRRDENPEYVWRTFESLLRERLKELEERIDAAAAAYQFELEFILNVLETDRAVAAFQFENTSRVHENWNQSDE 687
The following BLAST results are available for this feature:
BLAST of CMJ_chr6_022090.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL )
Total hits: 6
50 100 150 200 250 300 Expect = 7.20e-67 / Id = 100.00 Expect = 1.17e-20 / Id = 50.46 Expect = 1.77e-20 / Id = 51.40 Expect = 2.15e-20 / Id = 51.40 Expect = 2.17e-20 / Id = 51.40 Expect = 2.22e-20 / Id = 51.40 Sequence V4SA13|V4SA13_CITCL V4TLG9|V4TLG9_CITCL A0A2H5PM33|A0A2H5PM33_CITUN A0A2H5PM24|A0A2H5PM24_CITUN A0A067EU97|A0A067EU97_CITSI A0A2H5PM18|A0A2H5PM18_CITUN back to top
Sequences
The
following sequences are available for this feature:
mRNA sequence
>CMJ_chr6_022090.1_cmj_v1 ID=CMJ_chr6_022090.1_cmj_v1; Name=CMJ_chr6_022090.1; organism=Citrus maxima; type=mRNA; length=348bp back to top protein sequence of CMJ_chr6_022090.1_cmj_v1
>CMJ_chr6_022090.1_cmj_v1 ID=CMJ_chr6_022090.1_cmj_v1; Name=CMJ_chr6_022090.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=116bp back to top mRNA from alignment at chr6:26798768..26799478+
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=711bp; location=Sequence derived from: chr6:26798768..26799478+ (Citrus maximaATGGAGCGTTCAAATTTTCTGAGACTATGTGAGGAAAGACATGAGTATCT
GATAAAACAGAAAGCAGTAGAAGCAGTTGATGGTATATGTGGTGACGAGA
CTAAGCGAAGGGAAAAAAATCCAGAGTCTATGAAGGAAGCTTTTGCATCC
CTGCTTAGAGGACGGCAAGAAGTGCTAGAAGAGGGGAATGGTAATGCCAC
GAGTGATCAGTTTGAACTAGAATTTATTTTTAATCTTCTGGAAACGGACC
CTGTGACTGCTTACCAGTTTGAAGAAAAGCCCATAATGCACGAAAGCTTG
AATCCGTCAGATGATTGTCTAA GCACGACTAGAACAT
CTGGTTCATGA back to top Coding sequence (CDS) from alignment at chr6:26798768..26799478+
>CMJ_chr6_022090.1_cmj_v1 ID=CMJ_chr6_022090.1_cmj_v1; Name=CMJ_chr6_022090.1; organism=Citrus maxima; type=CDS; length=348bp; location=Sequence derived from: chr6:26798768..26799478+ (Citrus maxima back to top
