CMJ_chr8_011680.3 | Citrus Genome Database

Transcript Overview


Name	CMJ_chr8_011680.3
Unique Name	CMJ_chr8_011680.3_cmj_v1
Type	mRNA
Organism	Citrus maxima (Pomelo, pummelo)
Sequence length	372

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus maxima Cupi Majiayou v1.0 genome	2023-05-10
InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins	2023-05-12
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11	2023-05-15

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cccmjL255	Citrus clementina genome v1.0 (JGI)	Citrus clementina
caucmjL382	Citrus australis genome v1.0 (UQ)	Citrus australis
cmjdvaR289	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
cmjdvbR293	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
cmjfhsR495	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
cmjzkR520	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
cmjcsnR664	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjcsnR666	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjminR0929	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjminR0953	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjminR0977	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjeglR1351	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjeglR1365	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjeglR1382	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjeglR1421	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjeglR1437	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjeglR1451	Citrus glauca CRC3463 genome v1	Citrus glauca
ccrcmjL346	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcmjL351	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcmjL698	Citrus australasica CRC3672 genome v1	Citrus australasica
cmjcsgR433	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
abhcmjL420	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
abhcmjL430	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
cizcmjL363	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cllcmjL403	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
cmjcmmR494	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
cmjcmmR495	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
cmjmpkR392	Murraya paniculata genome v1.0 (Kunming)	Murraya paniculata
cmjmpkR393	Murraya paniculata genome v1.0 (Kunming)	Murraya paniculata
clhcmjL241	Clausena lansium cv. HP genome v1.0	Clausena lansium
cmjmpjR459	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
cmjmpjR460	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
cmhcmjL438	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
cmhcmjL443	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
cmjlssR488	Luvunga scandens cv. SYT genome v1.0	Luvunga scandens
clxcmjL198	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
clxcmjL205	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
cmjcsjR705	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjcsjR728	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjneiR414	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
cmjcraR665	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cmjcraR678	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cmjcraR681	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cchcmjL044	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
ciucmjL474	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucmjL795	Citrus inodora genome v1.0 (UQ)	Citrus inodora
cgacmjL432	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL438	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL827	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgucmjL425	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucmjL429	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucmjL788	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cmjcrcR446	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
cmjcstR436	Citrus sinensis cv. Newhall T2T v2.0 genome	Citrus sinensis
cmjcrmR630	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcrmR634	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcrmR651	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcriR656	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cmjcriR682	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cmjcriR685	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CMJ_chr8_011680	CMJ_chr8_011680_cmj_v1	Citrus maxima	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr8_011680.3.exon2	CMJ_chr8_011680.3.exon2_cmj_v1	Citrus maxima	exon
CMJ_chr8_011680.3.exon1	CMJ_chr8_011680.3.exon1_cmj_v1	Citrus maxima	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr8_011680.3.utr3.1	CMJ_chr8_011680.3.utr3.1_cmj_v1	Citrus maxima	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr8_011680.3.cds.2	CMJ_chr8_011680.3.cds.2_cmj_v1	Citrus maxima	CDS
CMJ_chr8_011680.3.cds.1	CMJ_chr8_011680.3.cds.1_cmj_v1	Citrus maxima	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr8_011680.3.utr5.1	CMJ_chr8_011680.3.utr5.1_cmj_v1	Citrus maxima	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr8_011680.3_cmj_v1	CMJ_chr8_011680.3_cmj_v1	Citrus maxima	polypeptide
CMJ_chr8_011680.3_cmj_v1	CMJ_chr8_011680.3_cmj_v1-protein	Citrus maxima	polypeptide

Homology

[Close]

BLAST of CMJ_chr8_011680.3 vs. ExPASy TrEMBL
Match: A0A067E8B2|A0A067E8B2_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g026747mg PE=4 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 3.023e-82
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0

Query:    1 MMSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVRYDLPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDVDSQQSRRRNRKNKKELPAGNCQILSFGQRKLQRLI 123
            MMSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVRYDLPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDV+SQQSRRRNRKNKKELPAGNCQILSFGQRKLQ LI
Sbjct:    1 MMSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVRYDLPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDVNSQQSRRRNRKNKKELPAGNCQILSFGQRKLQMLI 123

[Close]

BLAST of CMJ_chr8_011680.3 vs. ExPASy TrEMBL
Match: A0A2H5QYQ0|A0A2H5QYQ0_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_271790 PE=4 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 3.574e-81
Identity = 120/123 (97.56%), Postives = 121/123 (98.37%), Query Frame = 0

Query:    1 MMSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVRYDLPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDVDSQQSRRRNRKNKKELPAGNCQILSFGQRKLQRLI 123
            MMSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVRYDL RNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDV+SQQSRRRNRKNKKELPAGNCQILSFGQRKLQ LI
Sbjct:    1 MMSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVRYDLARNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDVNSQQSRRRNRKNKKELPAGNCQILSFGQRKLQMLI 123

[Close]

BLAST of CMJ_chr8_011680.3 vs. ExPASy TrEMBL
Match: A0A067DVV2|A0A067DVV2_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g026747mg PE=4 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 9.821e-70
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0

Query:    1 MMSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVRYDLPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDVDSQQSRRRNRKNKKELPAG 107
            MMSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVRYDLPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDV+SQQSRRRNRKNKKELPAG
Sbjct:    1 MMSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVRYDLPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDVNSQQSRRRNRKNKKELPAG 107

[Close]

BLAST of CMJ_chr8_011680.3 vs. ExPASy TrEMBL
Match: A0A067DZW0|A0A067DZW0_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g026747mg PE=4 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.457e-69
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0

Query:    1 MMSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVRYDLPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDVDSQQSRRRNRKNKKELPAG 107
            MMSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVRYDLPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDV+SQQSRRRNRKNKKELPAG
Sbjct:    1 MMSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVRYDLPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDVNSQQSRRRNRKNKKELPAG 107

[Close]

BLAST of CMJ_chr8_011680.3 vs. ExPASy TrEMBL
Match: A0A067DWC6|A0A067DWC6_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g026747mg PE=4 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.893e-69
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0

Query:    1 MMSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVRYDLPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDVDSQQSRRRNRKNKKELPAG 107
            MMSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVRYDLPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDV+SQQSRRRNRKNKKELPAG
Sbjct:    1 MMSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVRYDLPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDVNSQQSRRRNRKNKKELPAG 107

[Close]

BLAST of CMJ_chr8_011680.3 vs. ExPASy TrEMBL
Match: V4S9P3|V4S9P3_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029197mg PE=4 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 8.915e-69
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0

Query:    1 MMSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVRYDLPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDVDSQQSRRRNRKNKKELPAG 107
            MMSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVRYDLPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDV+SQQSRRRNRKNKKELPAG
Sbjct:    1 MMSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVRYDLPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDVNSQQSRRRNRKNKKELPAG 107

[Close]

BLAST of CMJ_chr8_011680.3 vs. ExPASy TrEMBL
Match: A0A067E7D1|A0A067E7D1_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g026747mg PE=4 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 8.915e-69
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0

Query:    1 MMSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVRYDLPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDVDSQQSRRRNRKNKKELPAG 107
            MMSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVRYDLPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDV+SQQSRRRNRKNKKELPAG
Sbjct:    1 MMSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVRYDLPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDVNSQQSRRRNRKNKKELPAG 107

[Close]

BLAST of CMJ_chr8_011680.3 vs. ExPASy TrEMBL
Match: A0A6J1EIK4|A0A6J1EIK4_CUCMO (uncharacterized protein LOC111434694 OS=Cucurbita moschata OX=3662 GN=LOC111434694 PE=4 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.585e-23
Identity = 57/116 (49.14%), Postives = 73/116 (62.93%), Query Frame = 0

Query:    2 MSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVR----------YDLPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDVDSQQSRRRNRKNKKELPAG 107
            MSL+L+Q YSSA  E+E ED    +  SS DD+ +  AAA  TV           ++LP+ S   GLPSAFD FS++SGPP FLNNS+E  A+  DVD  +  RRNR+ KK+LP G
Sbjct:    1 MSLALLQGYSSA--EEEAEDTSVFNNTSSDDDDQDLVAAAASTVTVNLSIRDRSLFELPQPSSHPGLPSAFDAFSEVSGPPEFLNNSVEEFAAPRDVDQPRGGRRNRREKKDLPTG 114

[Close]

BLAST of CMJ_chr8_011680.3 vs. ExPASy TrEMBL
Match: A0A6P6AC13|A0A6P6AC13_DURZI (uncharacterized protein LOC111308362 isoform X1 OS=Durio zibethinus OX=66656 GN=LOC111308362 PE=4 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.906e-22
Identity = 62/116 (53.45%), Postives = 74/116 (63.79%), Query Frame = 0

Query:    2 MSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRT--VRYD-----LPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDVDSQQSR---RRNRKNKKELPAG 107
            MSLSL+Q YSSA EE+  E D QIHY  SSDD+ N       T   RYD      P  S  S LPSAFD FSQISGPP FLN+++E + S+ D+D QQ R   RR+ K KK++PAG
Sbjct:    1 MSLSLLQGYSSAEEEEAAELD-QIHYSHSSDDDDNVGVKNHSTDPKRYDSSVFDFPHPSRKSALPSAFDAFSQISGPPEFLNHAVEEQTSASDLDHQQGRRGGRRDFKEKKDMPAG 115

[Close]

BLAST of CMJ_chr8_011680.3 vs. ExPASy TrEMBL
Match: A0A6J1JEC8|A0A6J1JEC8_CUCMA (uncharacterized protein LOC111486129 OS=Cucurbita maxima OX=3661 GN=LOC111486129 PE=4 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.508e-22
Identity = 56/116 (48.28%), Postives = 71/116 (61.21%), Query Frame = 0

Query:    2 MSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVR----------YDLPRNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDVDSQQSRRRNRKNKKELPAG 107
            MSL+L+Q YSSA EE E   D  +   +SSDD+     AA  TV           ++LP+ S   GLPSAFD FS++SGPP FLNNS+E  A+  DVD  +  RRNR+ KK+LP G
Sbjct:    1 MSLALLQGYSSAEEEAE---DTSVFNNTSSDDDDQDLVAAASTVTVNLSVRDRSLFELPQPSSHHGLPSAFDAFSEVSGPPEFLNNSVEEFAAPRDVDQLRGGRRNRREKKDLPTG 113

The following BLAST results are available for this feature:

BLAST of CMJ_chr8_011680.3 vs. ExPASy TrEMBL
BLAST of CMJ_chr8_011680.3 vs. ExPASy TrEMBL
BLAST of CMJ_chr8_011680.3 vs. ExPASy TrEMBL

BLAST of CMJ_chr8_011680.3 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL)
Total hits: 10

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A067E8B2\|A0A067E8B2_CITSI	3.023e-82	98.37	Uncharacterized protein OS=Citrus sinensis OX=2711...	[more]
A0A2H5QYQ0\|A0A2H5QYQ0_CITUN	3.574e-81	97.56	Uncharacterized protein OS=Citrus unshiu OX=55188 ...	[more]
A0A067DVV2\|A0A067DVV2_CITSI	9.821e-70	99.07	Uncharacterized protein OS=Citrus sinensis OX=2711...	[more]
A0A067DZW0\|A0A067DZW0_CITSI	1.457e-69	99.07	Uncharacterized protein OS=Citrus sinensis OX=2711...	[more]
A0A067DWC6\|A0A067DWC6_CITSI	1.893e-69	99.07	Uncharacterized protein OS=Citrus sinensis OX=2711...	[more]
V4S9P3\|V4S9P3_CITCL	8.915e-69	99.07	Uncharacterized protein OS=Citrus clementina OX=85...	[more]
A0A067E7D1\|A0A067E7D1_CITSI	8.915e-69	99.07	Uncharacterized protein OS=Citrus sinensis OX=2711...	[more]
A0A6J1EIK4\|A0A6J1EIK4_CUCMO	8.585e-23	49.14	uncharacterized protein LOC111434694 OS=Cucurbita ...	[more]
A0A6P6AC13\|A0A6P6AC13_DURZI	5.906e-22	53.45	uncharacterized protein LOC111308362 isoform X1 OS...	[more]
A0A6J1JEC8\|A0A6J1JEC8_CUCMA	8.508e-22	48.28	uncharacterized protein LOC111486129 OS=Cucurbita ...	[more]

BLAST of CMJ_chr8_011680.3 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr8_011680.3 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..107
IPR040306	Os02g0753200-like	PANTHER	PTHR35321	OS02G0753200 PROTEIN	coord: 2..107

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:14960506..14964831-
coding sequence from alignment at chr8:14960506..14964831-

mRNA sequence

>CMJ_chr8_011680.3_cmj_v1 ID=CMJ_chr8_011680.3_cmj_v1; Name=CMJ_chr8_011680.3; organism=Citrus maxima; type=mRNA; length=372bp
ATGATGAGCTTGTCGCTTATCCAAGACTATTCTTCTGCTGGAGAAGAAAA
AGAAGAAGAGGACGATGAACAAATCCATTATCAGAGCTCTTCAGACGACG
AAGCAAATGCCTCCGCCGCTGCTAAACGTACCGTCCGCTATGACCTCCCT
AGAAACTCCGTTGATTCTGGCCTTCCCTCCGCCTTCGACGTTTTCTCTCA
AATTTCAGGACCTCCACGGTTTCTTAACAATTCTCTCGAGGTAAAGGCTT
CCTCAATTGATGTCGATTCTCAGCAAAGCAGGCGCAGGAATCGCAAGAAT
AAGAAAGAGTTACCAGCTGGTAATTGTCAAATTCTTTCATTTGGTCAAAG
GAAATTGCAGAGGCTAATCTGA

protein sequence of CMJ_chr8_011680.3_cmj_v1

>CMJ_chr8_011680.3_cmj_v1 ID=CMJ_chr8_011680.3_cmj_v1; Name=CMJ_chr8_011680.3_cmj_v1; organism=Citrus maxima; type=polypeptide; length=124bp
MMSLSLIQDYSSAGEEKEEEDDEQIHYQSSSDDEANASAAAKRTVRYDLP
RNSVDSGLPSAFDVFSQISGPPRFLNNSLEVKASSIDVDSQQSRRRNRKN
KKELPAGNCQILSFGQRKLQRLI*

mRNA from alignment at chr8:14960506..14964831-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=4326bp; location=Sequence derived from: chr8:14960506..14964831- (Citrus maxima
CCTGAACCTGTCCGGCCCATTACCCCCATAAACTAAGAAGGCCCTAATGT
CAAATGTAGCAACTTAGAAATTGCCGAGCCGAATTCAAGCAAGCGGAAAC
AAGCTGGGAGAAGGGATGATGAGCTTGTCGCTTATCCAAGACTATTCTTC
TGCTGGAGAAGAAAAAGAAGAAGAGGACGATGAACAAATCCATTATCAGA
GCTCTTCAGACGACGAAGCAAATGCCTCCGCCGCTGCTAAACGTACCGTC
CGCTATGACCTCCCTAGAAACTCCGTTGATTCTGGCCTTCCCTCCGCCTT
CGACGTTTTCTCTCAAGTAGGGTTTATTCTTACTTGTTTTCTTTTCATTT
CTTTTTAAAATAATAATAATAATTAGCTGAATTGAATTAGCGTCTGATAT
TGGTTGGCTTTTGGTTACGAGAGATTTCAGGACCTCCACGGTTTCTTAAC
AATTCTCTCGAGGTAAAGGCTTCCTCAATTGATGTCGATTCTCAGCAAAG
CAGGCGCAGGAATCGCAAGAATAAGAAAGAGTTACCAGCTGGTAATTGTC
AAATTCTTTCATTTGGTCAAAGGAAATTGCAGAGGCTAATCTGATTTCTT
ATTATAACTAGTTGAAAAGGAAGCTAATTCTAGGGCACAAATAATAGCAT
AAAGTCTTAGTATTATCTGACGTATAAAGAATACTTTCTTTTTGAACAAT
CCTTCTTGTCACTCTATTCTTATGGAGAATACCTATGTTTTTGGTAAAAG
AAAAATGGCCAAAACTCGAAAAAAAAAAAAAAAAAAAAAGCCAAAAACTC
TTTGGATCTGTGCTGTGGCAGCTCTGTTTTGGGTAATGTGGCAGGAAAGA
GATCTTCTTATTTTTGAAGGAAACAAGCAGATAATATTGAGTTGTAGGAT
AGAATCTGTCTTCTAGCTTTGCTTTGGGCTTCAGTTTCTAAAGAGTTCCA
AGATTCATCTTTTTAATTCATTCATCTAAGCTGGGATAGTGTTTTGAGAT
AGGTGTCTAGGTTGGTCTGGTATTGTAGAGGGGGATTGGCGGGACTGGCA
TATTTTGTTTAGTGTAGAAAAGTGTTCATTATTTTGCTTTCTCAGTGGAC
GGTTGGTCCACTCCTTGTAATGATTCTTCATCATTAATATAATTTATAGT
TTCTTGTCCACAAAAAAAAAAAAAAAAAAAGATACTTCATTTGGTGGAAT
AAGATATTTTCTCAACTAATTAGGTTATTTTAGTGTTTCACTGATAGATT
GACATTTGCTAAATGCATCAGCCCTTGGTGTGGTGTTTCATGCTCTTATG
ATATGAGCAGTTCATAACTGGCAATCCGATTTGGCTTATCCAAAGTTCAT
TGTTTATTAATCATCACAAAACAAAAATTGAGGTGTTTGAGTTTTCTCAT
AAGCATTTATGGTAAAGTCCTGCACTTTAGAACACTTTTCTTAAAGAGTT
TAAGTTTTCTCGTAAAACATAAGATTGCGAGTCCAATAAAGTCGCAAATA
TCTTGATTTCTGCTGCTAATGTTGATCACTATCTAAATAACAGGTTTTGA
AGAGTTGAAAAGAAGTTATAATACCATCTTTATTATGTTCAAATTGCCTT
AGCTATTATGCTAGAGTATGCTCTCATATAGGCTGTGTGATGAGCATTTA
TTTATATGAATGCACTGGAAGGTTTTATGCTAGAAAAATATGATTTCATA
TCGGTTGTGTGTTGAGCATTTATTTATATGAATGCATTGGAAGGGACTTC
CATGACTAACATATAATCCACTCAAATGCTTCTTTATTAAGTTGCCACTA
GATTCACAAATTAGTGACATCTTAAGTTTTCTCGTTTGAAGTTATTGGAC
AGGTTTGTGGAAGAATAGAAGATGTTGAGAAACAAGCTGATCAACAATCG
AATGGGCATTTATATCTTGTCACAATATGATGTTAAAAATGTAGCAAAAC
TAGTTGCCAGTGTATGGGCTCATTAATGATTTTGGTTGGGGTTATACTTG
CCATTAGAAACAATCAGATTTCTAGAAAGGAGTTGAAGAAATTGTACTAG
GGATGTTGAAACTATTGACTATTTTTTTTTTTTGGTTGGGACCTTGCTTG
TGGGATCAATTCAAAGCAACTGAACTTAGAGAAAAATGCACCCATGAGTC
CACTTGAACGGATGGTAAGGATCTATATGCTATGTTTGCCAAAGGTCTGA
GATTTTAGGCATATTAAAGCAATTGTAGTTAGCTTTTTATAAGCCATTGT
CACCAGCTTACCATCTTTCTTATTAGTTTATATCAATTTTTAGATTTTAA
CTTTCTGCTTCTGAGCTTATAAATTTAACTTTTTGTTATCTATATATAAC
TATAGTACGGGATCCCAGTTTGGGCCCTTGGATTTGAAATCCAACGGCCT
ATTGCTTTTTTATTTTAAAATCTGCGCACGGTAGAATCCACCATGTGCAG
ATTTTAAGATCCAATTGGGATCCCGCACTTTAACTAACATGCGGGATCAG
TTATGAGAACCTATAATGTACATTTTTTGCCATGATCTTTAGTCTTATTT
CCAAATTCCTTTTAAACCCTTAAATGTGTAAAGCTTGATAAGGTGTCACC
TAGATGACCAGTCCTCCAGATATCAGTTATGCTTATGCATGTTGCATCAG
TTTAATTTATTTATATTTGGTCCCATGTATGTTTAGAAAGAAAAAAGCAA
AAACAAGCATTTCAATCCTGACAGAGTTCTCTGGAAAATACTGGTGCATT
ATTCAATATATGCTATTTAAATCTTCTTTTTGTGACAACTGCCTTTAATG
CATCAAATCTTTTCCTGTATGAAAACTACTGCTCTTCTTTGCTGCTATAT
ATTAAACTGTAAGTACACACAGCTAATATTAGACTTCCATAGATTTCTAG
GATTAAGGAGTTGGTGGTTGCGCTTGCAATAGCTTAAAATTTGGCTTCTA
TGGATGTCTGTCTTATTGCTAACTGTAAATACACAATAGACTTTTAGGAT
TGAGGAGTTGGATGTTGATTGCATTTCCAAGGGCTTAAAATTAGGGTTTT
GTCTTTGACTTGATGTCAACTCCTTTTGATTTGGTTCTAATTGTCTTAGG
TGCTGTGATGGAGGCCAAGGCTCAACTTGTTGGAATCCATGACCGAGTGA
GAAGTGATATGGAGGGCGACCAGCCTCCAGCCTCAGTTTCAAGCACAACA
CGAGGAGTCAAGCGTGTGGCGACTGCAACCAATCCCAATGCAGAAGATGC
TGCAGAGCTTCTCAGGTGTAATTTCCTTATTTAAATGCATACCTAAGATG
GTGAAATTTTTATCTTCAGTTGCGGAGAATTCATACAAGGTCTGAATTGT
GATAAACAGTTGTTGGATCTATTCTTGCATTTACAAATCCCTGAGTAGAA
TTAAACTTGCAAATTATGTACTAGGTGGGTGCTGACAAACTTGAGAGAGA
GAATTTAACAATTTCACTAGGCTTCCAGTTTGTGTGGACCCATGAAAATC
CCAGAATCTTGAGCAATAAATTAGTACGTGTTACATTTTATGAGCATGGA
TGTCTTTTTGGCCTTTCATGTGGATCCTGGAGTTCACTATCACTCTGATG
ACTAAATAAATTTATGTTCTCATGTCCTACTCCTTCAGGACTAATTTAAA
TAAATAATGTTTCAGTTTATTTTATATCTGTACTGTCTTGTACATCGGGG
TTAAGCTCATTTGAAGTTTATCTTGTAACATGTAATTTCCTCTTTGTAGG
ATGTGCTTGCAGTGTGGAATACCGAAGACCTTTTCAAATACACGTGGGAT
GGTTTGCCCAGTATGCAGTGATTGCCCTCCTGCAGACATAAGCAATGAGT
CCAAGAAGAAGGGCTCTATCATAAAAGATAGGGAGAAGAGTAAAAGGATG
AAGGGACAATCATCTCATGCTACTTGGAAAAGTGAAACAGAGATGCAGCT
CCGGCAGCAGTTTGATTGACCAAAATAAGTTGTATCCTGCGGATATTGTC
TGGCTGTGCAATATATGCTTTAGGATTATAAAGAAACGATTCTATAACCT
TAGAGATGGTCAATTGCTAAATACTCCACGTTTATTTATGGTATAGAGCA
TGTTTTGGCTTTCATTACTTGATGTTATCTGCTGTTTGCTTACTCCTTGT
ACATGCTTTGTAACAAGTGGCTTGGATCTAAACCAAATTGGAAATACATG
ACAGATGTACTTCCAAAATGATAGCAGGAATAGTTTCTGTATCGAAAGTT
GAGTTCACAACTGAAGAAACCGAGAACATTGAGATTCTTATTATATATTA
ATTTTTGAAAACGACCACTCTGAGAA

Coding sequence (CDS) from alignment at chr8:14960506..14964831-

>CMJ_chr8_011680.3_cmj_v1 ID=CMJ_chr8_011680.3_cmj_v1; Name=CMJ_chr8_011680.3; organism=Citrus maxima; type=CDS; length=372bp; location=Sequence derived from: chr8:14960506..14964831- (Citrus maxima
ATGATGAGCTTGTCGCTTATCCAAGACTATTCTTCTGCTGGAGAAGAAAA
AGAAGAAGAGGACGATGAACAAATCCATTATCAGAGCTCTTCAGACGACG
AAGCAAATGCCTCCGCCGCTGCTAAACGTACCGTCCGCTATGACCTCCCT
AGAAACTCCGTTGATTCTGGCCTTCCCTCCGCCTTCGACGTTTTCTCTCA
AATTTCAGGACCTCCACGGTTTCTTAACAATTCTCTCGAGGTAAAGGCTT
CCTCAATTGATGTCGATTCTCAGCAAAGCAGGCGCAGGAATCGCAAGAAT
AAGAAAGAGTTACCAGCTGGTAATTGTCAAATTCTTTCATTTGGTCAAAG
GAAATTGCAGAGGCTAATCTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR040306	Os02g0753200-like