CMJ_chr8_012290.1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr8_012290.1 vs. ExPASy TrEMBL
Match: M0RL58|M0RL58_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.156e-27 Identity = 54/83 (65.06%), Postives = 59/83 (71.08%), Query Frame = 0 Query: 1 MTSLVNAAKAVGNASVLVTIEVVRPRKAHAPTGNGLKTRPAIVERKIERSCHACGETSTGLGTRKRRMRPMEMEITKGSSLAP 83 +TS VNA KA VLV IE VRP KA APT GL TRPA+V+RK+ RSCHACG TSTGLGTR R RPM EI KG+ AP Sbjct: 49 ITSFVNAPKAAEKVRVLVIIEAVRPMKAQAPTDRGLSTRPAMVDRKMARSCHACGVTSTGLGTRNRTARPMATEIAKGTGFAP 131
BLAST of CMJ_chr8_012290.1 vs. ExPASy TrEMBL
Match: A0A5N6NI79|A0A5N6NI79_9ASTR (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_20835 PE=4 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 4.124e-21 Identity = 49/83 (59.04%), Postives = 54/83 (65.06%), Query Frame = 0 Query: 1 MTSLVNAAKAVGNASVLVTIEVVRPRKAHAPTGNGLKTRPAIVERKIERSCHACGETSTGLGTRKRRMRPMEMEITKGSSLAP 83 MTS VNAA A N SVLVT E+VR KA APTGNG K RP +V RK+ + AC ETS GLG K+ M PM MEI G AP Sbjct: 1 MTSFVNAANASLNGSVLVTTEMVRHTKAQAPTGNGPKMRPTMVVRKMANNRQACFETSAGLGIAKQTMSPMVMEIASGIGFAP 83
BLAST of CMJ_chr8_012290.1 vs. ExPASy TrEMBL
Match: A0A5N6PI24|A0A5N6PI24_9ASTR (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_09060 PE=4 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 6.289e-21 Identity = 56/97 (57.73%), Postives = 65/97 (67.01%), Query Frame = 0 Query: 1 MTSLVNAAKAVGNASVLVTIEVVRPRKAHAPTGNGLKTRPAIVERKIERSCHACGETSTGLGTRKRRMRPMEMEITKGSSLAPRGGGGDGKFVGGTV 97 MTSLVNA AV N VLV I VVRP +AHAPTGNG +T PA+VE KI++SCHACG TSTG G R +PM +E KG+ AP G G + TV Sbjct: 1 MTSLVNALNAVVNVRVLVMIVVVRPNRAHAPTGNGDRTSPAMVETKIDKSCHACGVTSTGFGIANRINKPMAIERVKGTIFAPCDWGVLGSVIEVTV 97
BLAST of CMJ_chr8_012290.1 vs. ExPASy TrEMBL
Match: A0A5N6LJ90|A0A5N6LJ90_9ASTR (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_42232 PE=4 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.474e-20 Identity = 56/97 (57.73%), Postives = 64/97 (65.98%), Query Frame = 0 Query: 1 MTSLVNAAKAVGNASVLVTIEVVRPRKAHAPTGNGLKTRPAIVERKIERSCHACGETSTGLGTRKRRMRPMEMEITKGSSLAPRGGGGDGKFVGGTV 97 MTSLVNA AV N VLV I VVRP +AHAPTGNG +T PA+VE KI++SCHACG TSTG G R +PM +E KG AP G G + TV Sbjct: 1 MTSLVNALNAVVNVRVLVMIVVVRPNRAHAPTGNGDRTSPAMVETKIDKSCHACGVTSTGFGIANRINKPMAIERVKGRIFAPCDWGVLGSVIEVTV 97
BLAST of CMJ_chr8_012290.1 vs. ExPASy TrEMBL
Match: A0A0A9FIH0|A0A0A9FIH0_ARUDO (PDCT1 OS=Arundo donax OX=35708 PE=4 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.107e-18 Identity = 47/81 (58.02%), Postives = 52/81 (64.20%), Query Frame = 0 Query: 1 MTSLVNAAKAVGNASVLVTIEVVRPRKAHAPTGNGLKTRPAIVERKIERSCHACGETSTGLGTRKRRMRPMEMEITKGSSL 81 MTSLV A KA N SV V V PRKA APTG+G T PA+VERK+ERSCHA TS G G R R RP E+T G+S Sbjct: 23 MTSLVKAEKAAVNGSVCVATAAVSPRKAQAPTGSGPSTSPAMVERKMERSCHARRLTSAGRGARNRTARPTAREMTSGTSF 103
BLAST of CMJ_chr8_012290.1 vs. ExPASy TrEMBL
Match: A0A4D6KLQ7|A0A4D6KLQ7_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG1g188 PE=4 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 5.516e-12 Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = 0 Query: 42 IVERKIERSCHACGETSTGLGTRKRRMRPMEMEITKGSSLAPRGGGGDG 90 +VERK+ERSC A G TSTGLGT+KR MRPM MEITKG AP G G G Sbjct: 1 MVERKMERSCQASGVTSTGLGTKKRTMRPMPMEITKGRGFAPWRGVGVG 49 The following BLAST results are available for this feature:
BLAST of CMJ_chr8_012290.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 6 Position : 0 Zoom : x 1
BLAST of CMJ_chr8_012290.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr8_012290.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr8_012290.1_cmj_v1 ID=CMJ_chr8_012290.1_cmj_v1; Name=CMJ_chr8_012290.1; organism=Citrus maxima; type=mRNA; length=309bpback to top protein sequence of CMJ_chr8_012290.1_cmj_v1 >CMJ_chr8_012290.1_cmj_v1 ID=CMJ_chr8_012290.1_cmj_v1; Name=CMJ_chr8_012290.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=103bpback to top mRNA from alignment at chr8:19735626..19735934+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=309bp; location=Sequence derived from: chr8:19735626..19735934+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr8:19735626..19735934+ >CMJ_chr8_012290.1_cmj_v1 ID=CMJ_chr8_012290.1_cmj_v1; Name=CMJ_chr8_012290.1; organism=Citrus maxima; type=CDS; length=309bp; location=Sequence derived from: chr8:19735626..19735934+ (Citrus maximaback to top |