CMJ_chr8_012810.1 | Citrus Genome Database

Transcript Overview


Name	CMJ_chr8_012810.1
Unique Name	CMJ_chr8_012810.1_cmj_v1
Type	mRNA
Organism	Citrus maxima (Pomelo, pummelo)
Sequence length	252

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus maxima Cupi Majiayou v1.0 genome	2023-05-10
InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins	2023-05-12
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11	2023-05-15

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cccmjL257	Citrus clementina genome v1.0 (JGI)	Citrus clementina
caucmjL383	Citrus australis genome v1.0 (UQ)	Citrus australis
clecmjL342	Citrus limon cv. Eureka genome v1.0	Citrus limon
clecmjL389	Citrus limon cv. Eureka genome v1.0	Citrus limon
clecmjL643	Citrus limon cv. Eureka genome v1.0	Citrus limon
clecmjL679	Citrus limon cv. Eureka genome v1.0	Citrus limon
cmjminR0945	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjminR0983	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjeglR1343	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjeglR1415	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjmpkR392	Murraya paniculata genome v1.0 (Kunming)	Murraya paniculata
cmjmpjR453	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
clxcmjL196	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
clxcmjL505	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
cmjcraR666	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cmjcraR682	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
ciucmjL475	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucmjL793	Citrus inodora genome v1.0 (UQ)	Citrus inodora
cgacmjL179	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL436	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL563	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL828	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgucmjL430	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucmjL789	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cmjcrcR454	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
cmjcrmR634	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcrmR658	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcriR663	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cmjcriR685	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata

Orthologs


Gene/Transcript	Assembly	Species
g1330.t1	Citrus australis genome v1.0 (UQ)	Citrus australis
CP8g001508.t1	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
g23693.t1_h1	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
g24237.t1_h2	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
JLX121870.1	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
evm.model.ctg57.30	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
hap2-g23094.t1	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
hap1-g24176.t1	Citrus inodora genome v1.0 (UQ)	Citrus inodora
g24437.t1_h1	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
mi_v1.0.primary_g23879.t1	Citrus inodora CRC3784 genome v1.0	Citrus inodora
hap1-g23407.t1	Citrus glauca genome v1.0 (UQ)	Citrus glauca
NM_gene53064.t1	Citrus limon cv. Eureka genome v1.0	Citrus limon
Me_20529.1	Murraya paniculata genome v1.0 (Kunming)	Murraya paniculata
hap2-g25975.t1	Citrus inodora genome v1.0 (UQ)	Citrus inodora
hap1-g22721.t1	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
g25024.t1_h2	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
NM_gene56133.t1	Citrus limon cv. Eureka genome v1.0	Citrus limon

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CMJ_chr8_012810	CMJ_chr8_012810_cmj_v1	Citrus maxima	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr8_012810.1.exon1	CMJ_chr8_012810.1.exon1_cmj_v1	Citrus maxima	exon
CMJ_chr8_012810.1.exon2	CMJ_chr8_012810.1.exon2_cmj_v1	Citrus maxima	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr8_012810.1.cds.1	CMJ_chr8_012810.1.cds.1_cmj_v1	Citrus maxima	CDS
CMJ_chr8_012810.1.cds.2	CMJ_chr8_012810.1.cds.2_cmj_v1	Citrus maxima	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr8_012810.1_cmj_v1	CMJ_chr8_012810.1_cmj_v1	Citrus maxima	polypeptide
CMJ_chr8_012810.1_cmj_v1	CMJ_chr8_012810.1_cmj_v1-protein	Citrus maxima	polypeptide

Homology

[Close]

BLAST of CMJ_chr8_012810.1 vs. ExPASy TrEMBL
Match: V4SDU4|V4SDU4_CITCL (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v100279792mg PE=4 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.606e-35
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0

Query:   20 GGNVGFGNVGNVGCCGIPGTEGRGGNVGNCNRLRAASPSLMEANAKATKKANMKQLLEAILGLC 83
            GGNVGFGNVGNVGCCGIPGTEGRGGNVGNCNRLRAASPSLMEANA+ATKKANMKQLLEAILGLC
Sbjct:    1 GGNVGFGNVGNVGCCGIPGTEGRGGNVGNCNRLRAASPSLMEANARATKKANMKQLLEAILGLC 64

The following BLAST results are available for this feature:

BLAST of CMJ_chr8_012810.1 vs. ExPASy TrEMBL
BLAST of CMJ_chr8_012810.1 vs. ExPASy TrEMBL
BLAST of CMJ_chr8_012810.1 vs. ExPASy TrEMBL

BLAST of CMJ_chr8_012810.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
V4SDU4\|V4SDU4_CITCL	1.606e-35	98.44	Uncharacterized protein (Fragment) OS=Citrus cleme...	[more]

BLAST of CMJ_chr8_012810.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr8_012810.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:21188177..21188500+
coding sequence from alignment at chr8:21188177..21188500+

mRNA sequence

>CMJ_chr8_012810.1_cmj_v1 ID=CMJ_chr8_012810.1_cmj_v1; Name=CMJ_chr8_012810.1; organism=Citrus maxima; type=mRNA; length=252bp
ATGGAAGGAATTGTACTTGTAGGGTTTGGCAGTGGTGGCAACGTTGGCTT
TGGCAGTGGTGGCAACGTTGGCTTTGGCAATGTTGGCAACGTTGGCTGCT
GTGGCATCCCTGGTACTGAAGGCAGAGGTGGCAATGTTGGCAATTGCAAT
AGGTTACGAGCTGCTAGCCCCTCATTGATGGAAGCAAATGCCAAAGCCAC
AAAGAAAGCTAATATGAAACAATTGCTAGAGGCCATTCTTGGATTGTGTT
GA

protein sequence of CMJ_chr8_012810.1_cmj_v1

>CMJ_chr8_012810.1_cmj_v1 ID=CMJ_chr8_012810.1_cmj_v1; Name=CMJ_chr8_012810.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=84bp
MEGIVLVGFGSGGNVGFGSGGNVGFGNVGNVGCCGIPGTEGRGGNVGNCN
RLRAASPSLMEANAKATKKANMKQLLEAILGLC*

mRNA from alignment at chr8:21188177..21188500+

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=324bp; location=Sequence derived from: chr8:21188177..21188500+ (Citrus maxima
ATGGAAGGAATTGTACTTGGTATATTAGGAATTGAGGGAATGCTTGGAAA
TGGGGGCAGAGTCGGAATTTTTGGGATACTTGGAATTGTAGTAGGGTTTG
GCAGTGGTGGCAACGTTGGCTTTGGCAGTGGTGGCAACGTTGGCTTTGGC
AATGTTGGCAACGTTGGCTGCTGTGGCATCCCTGGTACTGAAGGCAGAGG
TGGCAATGTTGGCAATTGCAATAGGTTACGAGCTGCTAGCCCCTCATTGA
TGGAAGCAAATGCCAAAGCCACAAAGAAAGCTAATATGAAACAATTGCTA
GAGGCCATTCTTGGATTGTGTTGA

Coding sequence (CDS) from alignment at chr8:21188177..21188500+

>CMJ_chr8_012810.1_cmj_v1 ID=CMJ_chr8_012810.1_cmj_v1; Name=CMJ_chr8_012810.1; organism=Citrus maxima; type=CDS; length=252bp; location=Sequence derived from: chr8:21188177..21188500+ (Citrus maxima
ATGGAAGGAATTGTACTTGTAGGGTTTGGCAGTGGTGGCAACGTTGGCTT
TGGCAGTGGTGGCAACGTTGGCTTTGGCAATGTTGGCAACGTTGGCTGCT
GTGGCATCCCTGGTACTGAAGGCAGAGGTGGCAATGTTGGCAATTGCAAT
AGGTTACGAGCTGCTAGCCCCTCATTGATGGAAGCAAATGCCAAAGCCAC
AAAGAAAGCTAATATGAAACAATTGCTAGAGGCCATTCTTGGATTGTGTT
GA