Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
CMJ_chr8_013350.1.exon1 CMJ_chr8_013350.1.exon1_cmj_v1 Citrus maxima exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
CMJ_chr8_013350.1.cds.1 CMJ_chr8_013350.1.cds.1_cmj_v1 Citrus maxima CDS
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
CMJ_chr8_013350.1_cmj_v1 CMJ_chr8_013350.1_cmj_v1 Citrus maxima polypeptide
CMJ_chr8_013350.1_cmj_v1 CMJ_chr8_013350.1_cmj_v1-protein Citrus maxima polypeptide
Homology
BLAST of CMJ_chr8_013350.1 vs. ExPASy TrEMBL
Match:
A0A2H5QXI6|A0A2H5QXI6_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_271110 PE=4 SV=1)
HSP 1 Score: 171.014 bits (432), Expect = 2.468e-50
Identity = 86/125 (68.80%), Postives = 104/125 (83.20%), Query Frame = 0
Query: 8 KERNMKWELNDDGGSFDRILREAEEAANVDESFKMSSLVRMIVQRHIVKQVAPKE-FGNLGFYLPKGRRDSVSQSLPGRRTPSLTLKINNKKITLNRCFDQTYVRADEDDEQEFRKPKKWRRRGS 131
+ER MKW LNDDGGSF+RILREAEEAAN DES KMSSL R+IVQ+ + KQ+A K+ F NLGF +PK RR SVS++LP RR PSL LKINNKKITL RCFDQT+ R D+DDE+E R+P+K R++G+
Sbjct: 2 EERKMKWRLNDDGGSFERILREAEEAANGDESLKMSSLTRIIVQQLVEKQLAQKKKFDNLGFDIPKRRRGSVSENLPSRRMPSLILKINNKKITLKRCFDQTHDRGDKDDEKEIRQPRKQRKKGN 126
BLAST of CMJ_chr8_013350.1 vs. ExPASy TrEMBL
Match:
V4SDK6|V4SDK6_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10030095mg PE=4 SV=1)
HSP 1 Score: 169.859 bits (429), Expect = 5.537e-50
Identity = 85/125 (68.00%), Postives = 103/125 (82.40%), Query Frame = 0
Query: 12 MKWELNDDGGSFDRILREAEEAANVDESFKMSSLVRMIVQRHIVKQVAPKE-FGNLGFYLPKGRRDSVSQSLPGRRTPSLTLKINNKKITLNRCFDQTYVRADEDDEQEFRKPKKWRRRGSGRMH 135
MKW LNDDGGSF+RILREAEEAAN DES KMSSL R+IVQ+ + KQ+A K+ F NLGF +PK RR SVS++LP RR PSL LKINNKKITL RCFDQTY R D+DDE+E R+P+K R++G+ ++
Sbjct: 1 MKWRLNDDGGSFERILREAEEAANGDESLKMSSLTRIIVQQLVEKQLAQKKKFDNLGFDIPKRRRGSVSENLPSRRMPSLILKINNKKITLKRCFDQTYDRGDKDDEKEIRQPRKQRKKGNKNVN 125
BLAST of CMJ_chr8_013350.1 vs. ExPASy TrEMBL
Match:
V4UC96|V4UC96_CITCL (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10030359mg PE=4 SV=1)
HSP 1 Score: 161.77 bits (408), Expect = 2.541e-46
Identity = 81/121 (66.94%), Postives = 99/121 (81.82%), Query Frame = 0
Query: 12 MKWELNDDGGSFDRILREAEEAANVDESFKMSSLVRMIVQRHIVKQVAPKE-FGNLGFYLPKGRRDSVSQSLPGRRTPSLTLKINNKKITLNRCFDQTYVRADEDDEQEFRKPKKWRRRGS 131
MKW L+DD GSF+RILREAEEAAN DES KMSSL R+IVQ+ + KQ+A K+ F NLGF +PK RR SVS++LP RR PSL LKINNKKITL RCFDQT+ R +DDE+E R+P+K R++G+
Sbjct: 1 MKWRLHDDSGSFERILREAEEAANGDESLKMSSLTRIIVQQLVEKQLAQKKKFDNLGFDIPKRRRGSVSENLPSRRMPSLILKINNKKITLKRCFDQTHDRGHKDDEKEIRQPRKQRKKGN 121
BLAST of CMJ_chr8_013350.1 vs. ExPASy TrEMBL
Match:
V4S8X6|V4S8X6_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10030266mg PE=4 SV=1)
HSP 1 Score: 134.42 bits (337), Expect = 4.029e-36
Identity = 74/121 (61.16%), Postives = 89/121 (73.55%), Query Frame = 0
Query: 12 MKWELNDDGGSFDRILREAEEAANVDESFKMSSLVRMIVQRHIVKQVAPKE-FGNLGFYLPKGRRDSVSQSLPGRRTPSLTLKINNKKITLNRCFDQTYVRADEDDEQEFRKPKKWRRRGS 131
MKWELN DGGSFDRIL+ AEEAA+ DES KMS + R+IVQ+ + KQ+A K+ F NLG R SVS++L R PSL LKINNKKI L RCFDQT R D+DDE+E RKP+K R +G+
Sbjct: 1 MKWELNYDGGSFDRILKAAEEAADGDESLKMSLVTRIIVQQLVEKQMAQKKKFDNLG------GRGSVSENLTRSRMPSLILKINNKKIALKRCFDQTNDRGDKDDEKEIRKPRKQREKGN 115
The following BLAST results are available for this feature:
BLAST of CMJ_chr8_013350.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL )
Total hits: 4
50 100 150 200 250 300 350 400 Expect = 2.47e-50 / Id = 68.80 Expect = 5.54e-50 / Id = 68.00 Expect = 2.54e-46 / Id = 66.94 Expect = 4.03e-36 / Id = 61.16 Sequence A0A2H5QXI6|A0A2H5QXI6_CITUN V4SDK6|V4SDK6_CITCL V4UC96|V4UC96_CITCL V4S8X6|V4S8X6_CITCL
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>CMJ_chr8_013350.1_cmj_v1 ID=CMJ_chr8_013350.1_cmj_v1; Name=CMJ_chr8_013350.1; organism=Citrus maxima; type=mRNA; length=414bp ATGAGAAGAAAGAAGATGGAAAAAGAGAGAAACATGAAATGGGAATTGAA TGATGATGGTGGTTCTTTTGACAGAATTTTGAGAGAGGCGGAAGAGGCTG CCAATGTTGATGAGTCCTTCAAAATGAGTTCACTTGTGAGGATGATTGTT CAAAGGCATATTGTAAAACAAGTGGCTCCAAAGGAATTTGGCAATCTGGG GTTTTACCTACCCAAAGGAAGAAGAGATTCTGTTTCTCAAAGCTTGCCAG GAAGAAGAACGCCGTCGCTAACACTTAAAATTAACAATAAAAAGATTACT CTGAACAGGTGCTTTGATCAGACTTATGTCAGAGCCGATGAAGATGATGA ACAAGAGTTCAGAAAGCCCAAAAAGTGGAGAAGACGGGGGTCAGGAAGAA TGCATATTTGCTGA back to top protein sequence of CMJ_chr8_013350.1_cmj_v1
>CMJ_chr8_013350.1_cmj_v1 ID=CMJ_chr8_013350.1_cmj_v1; Name=CMJ_chr8_013350.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=138bp MRRKKMEKERNMKWELNDDGGSFDRILREAEEAANVDESFKMSSLVRMIV QRHIVKQVAPKEFGNLGFYLPKGRRDSVSQSLPGRRTPSLTLKINNKKIT LNRCFDQTYVRADEDDEQEFRKPKKWRRRGSGRMHIC* back to top mRNA from alignment at chr8:22464323..22464736-
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=414bp; location=Sequence derived from: chr8:22464323..22464736- (Citrus maximaATGAGAAGAAAGAAGATGGAAAAAGAGAGAAACATGAAATGGGAATTGAA
TGATGATGGTGGTTCTTTTGACAGAATTTTGAGAGAGGCGGAAGAGGCTG
CCAATGTTGATGAGTCCTTCAAAATGAGTTCACTTGTGAGGATGATTGTT
CAAAGGCATATTGTAAAACAAGTGGCTCCAAAGGAATTTGGCAATCTGGG
GTTTTACCTACCCAAAGGAAGAAGAGATTCTGTTTCTCAAAGCTTGCCAG
GAAGAAGAACGCCGTCGCTAACACTTAAAATTAACAATAAAAAGATTACT
CTGAACAGGTGCTTTGATCAGACTTATGTCAGAGCCGATGAAGATGATGA
ACAAGAGTTCAGAAAGCCCAAAAAGTGGAGAAGACGGGGGTCAGGAAGAA
TGCATATTTGCTGA back to top Coding sequence (CDS) from alignment at chr8:22464323..22464736-
>CMJ_chr8_013350.1_cmj_v1 ID=CMJ_chr8_013350.1_cmj_v1; Name=CMJ_chr8_013350.1; organism=Citrus maxima; type=CDS; length=414bp; location=Sequence derived from: chr8:22464323..22464736- (Citrus maxima ATGAGAAGAAAGAAGATGGAAAAAGAGAGAAACATGAAATGGGAATTGAA TGATGATGGTGGTTCTTTTGACAGAATTTTGAGAGAGGCGGAAGAGGCTG CCAATGTTGATGAGTCCTTCAAAATGAGTTCACTTGTGAGGATGATTGTT CAAAGGCATATTGTAAAACAAGTGGCTCCAAAGGAATTTGGCAATCTGGG GTTTTACCTACCCAAAGGAAGAAGAGATTCTGTTTCTCAAAGCTTGCCAG GAAGAAGAACGCCGTCGCTAACACTTAAAATTAACAATAAAAAGATTACT CTGAACAGGTGCTTTGATCAGACTTATGTCAGAGCCGATGAAGATGATGA ACAAGAGTTCAGAAAGCCCAAAAAGTGGAGAAGACGGGGGTCAGGAAGAA TGCATATTTGCTGA back to top