CMJ_chr8_015420.1 | Citrus Genome Database

Transcript Overview


Name	CMJ_chr8_015420.1
Unique Name	CMJ_chr8_015420.1_cmj_v1
Type	mRNA
Organism	Citrus maxima (Pomelo, pummelo)
Sequence length	318

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus maxima Cupi Majiayou v1.0 genome	2023-05-10
InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins	2023-05-12
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11	2023-05-15

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
caucmjL383	Citrus australis genome v1.0 (UQ)	Citrus australis
clecmjL342	Citrus limon cv. Eureka genome v1.0	Citrus limon
clecmjL389	Citrus limon cv. Eureka genome v1.0	Citrus limon
cmjdvaR295	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
cmjdvbR293	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
cmjfhsR496	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
cmcmjL499	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmjcsnR658	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjcsnR666	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjminR0943	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjminR0983	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjeglR1363	Citrus glauca CRC3463 genome v1	Citrus glauca
cmjeglR1434	Citrus glauca CRC3463 genome v1	Citrus glauca
ccrcmjL352	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcmjL699	Citrus australasica CRC3672 genome v1	Citrus australasica
cmjcsgR439	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
cizcmjL357	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cllcmjL120	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
cmjcmxR540	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cmjcmmR454	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
cmhcmjL444	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
cmhcmjL447	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
clxcmjL196	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
cmjcsjR699	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjcsjR728	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjneiR407	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
cmjcraR666	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cmjcraR682	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
ciucmjL475	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucmjL793	Citrus inodora genome v1.0 (UQ)	Citrus inodora
cgacmjL436	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL828	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgucmjL430	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucmjL789	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cmjcumR685	Citrus unshiu cv. Miyagawa Wase genome v1.0	Citrus unshiu
cmjcrcR454	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
cmjcrmR634	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcrmR658	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcriR663	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cmjcriR685	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CMJ_chr8_015420	CMJ_chr8_015420_cmj_v1	Citrus maxima	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr8_015420.1.exon1	CMJ_chr8_015420.1.exon1_cmj_v1	Citrus maxima	exon
CMJ_chr8_015420.1.exon2	CMJ_chr8_015420.1.exon2_cmj_v1	Citrus maxima	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr8_015420.1.cds.1	CMJ_chr8_015420.1.cds.1_cmj_v1	Citrus maxima	CDS
CMJ_chr8_015420.1.cds.2	CMJ_chr8_015420.1.cds.2_cmj_v1	Citrus maxima	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr8_015420.1_cmj_v1	CMJ_chr8_015420.1_cmj_v1	Citrus maxima	polypeptide
CMJ_chr8_015420.1_cmj_v1	CMJ_chr8_015420.1_cmj_v1-protein	Citrus maxima	polypeptide

Homology

[Close]

BLAST of CMJ_chr8_015420.1 vs. ExPASy TrEMBL
Match: A0A2H5NV16|A0A2H5NV16_CITUN (EF-hand domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_077600 PE=4 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 3.272e-10
Identity = 31/41 (75.61%), Postives = 32/41 (78.05%), Query Frame = 0

Query:   66 TVGDGNGDLDHVM-AVVRRLWARPSSVPAVRVTVGDCCLWV 105
            T  DG GD+D    AVVRRLWA PSSVP VRVTVGDCCLWV
Sbjct:   78 TYDDGAGDVDRDFDAVVRRLWACPSSVPTVRVTVGDCCLWV 118

The following BLAST results are available for this feature:

BLAST of CMJ_chr8_015420.1 vs. ExPASy TrEMBL
BLAST of CMJ_chr8_015420.1 vs. ExPASy TrEMBL
BLAST of CMJ_chr8_015420.1 vs. ExPASy TrEMBL

BLAST of CMJ_chr8_015420.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A2H5NV16\|A0A2H5NV16_CITUN	3.272e-10	75.61	EF-hand domain-containing protein OS=Citrus unshiu...	[more]

BLAST of CMJ_chr8_015420.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr8_015420.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:27870245..27870929+
coding sequence from alignment at chr8:27870245..27870929+

mRNA sequence

>CMJ_chr8_015420.1_cmj_v1 ID=CMJ_chr8_015420.1_cmj_v1; Name=CMJ_chr8_015420.1; organism=Citrus maxima; type=mRNA; length=318bp
ATGAAGAGGAAGAAAATCAGTAACTTGCAGCAACAACTCCAGCACCAATT
CGAGCACCAGTACATTTCCAGCAAAAAAAATTTCAACAGCAACAACCTGG
CCAAGGGGAGCCGAAGTGTGGCGCCTTGTGAGTGGATAAGGAGGGGAGTG
CTGGCTGTCGCTCGTGTTAGCTTTGTGAGTGCCGGCTGTCGCGTGACTGT
CGGTGATGGCAACGGAGACCTCGATCACGTGATGGCGGTGGTCCGTCGTC
TGTGGGCTCGTCCTTCGTCTGTGCCGGCTGTTCGCGTGACCGTGGGTGAT
TGTTGTTTGTGGGTGTGA

protein sequence of CMJ_chr8_015420.1_cmj_v1

>CMJ_chr8_015420.1_cmj_v1 ID=CMJ_chr8_015420.1_cmj_v1; Name=CMJ_chr8_015420.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=106bp
MKRKKISNLQQQLQHQFEHQYISSKKNFNSNNLAKGSRSVAPCEWIRRGV
LAVARVSFVSAGCRVTVGDGNGDLDHVMAVVRRLWARPSSVPAVRVTVGD
CCLWV*

mRNA from alignment at chr8:27870245..27870929+

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=685bp; location=Sequence derived from: chr8:27870245..27870929+ (Citrus maxima
ATGAAGAGGAAGAAAATCAGTAACTTGGTTCTGTAACGTTACAAATTCAA
CCGGGCAGCACGTTGTGAGCATTCCCTTTTCATCAAACGACGTCGCTCTG
CTTTGCTTCAATTCATTTCAGCTGGGCAGCACTTTGTGAGCTCTGCTCTG
CTTCAATTCATTTTGAAAATAAATCAGAACATAAAAAATTTTGTGCCCAG
GCCAAACACTGATTACAGAAGCTTGTAGTTGAGACAGGAATAGAAACAGA
AACAAACAAAAACAATCAGGAGTTCACACACACACAAAAAAATAAAAATT
CCAGCAACAATTCCAGCACCAATTCCAACACCAGTAACACTTCCAACAAA
AACAATTCCAGTAACATTAACACTTCCAGCAAAAAAAATTCCAGCAGCAA
CAACTCCAGCACCAATTCGAGCACCAGTACATTTCCAGCAAAAAAAATTT
CAACAGCAACAACCTGGCCAAGGGGAGCCGAAGTGTGGCGCCTTGTGAGT
GGATAAGGAGGGGAGTGCTGGCTGTCGCTCGTGTTAGCTTTGTGAGTGCC
GGCTGTCGCGTGACTGTCGGTGATGGCAACGGAGACCTCGATCACGTGAT
GGCGGTGGTCCGTCGTCTGTGGGCTCGTCCTTCGTCTGTGCCGGCTGTTC
GCGTGACCGTGGGTGATTGTTGTTTGTGGGTGTGA

Coding sequence (CDS) from alignment at chr8:27870245..27870929+

>CMJ_chr8_015420.1_cmj_v1 ID=CMJ_chr8_015420.1_cmj_v1; Name=CMJ_chr8_015420.1; organism=Citrus maxima; type=CDS; length=318bp; location=Sequence derived from: chr8:27870245..27870929+ (Citrus maxima
ATGAAGAGGAAGAAAATCAGTAACTTGCAGCAACAACTCCAGCACCAATT
CGAGCACCAGTACATTTCCAGCAAAAAAAATTTCAACAGCAACAACCTGG
CCAAGGGGAGCCGAAGTGTGGCGCCTTGTGAGTGGATAAGGAGGGGAGTG
CTGGCTGTCGCTCGTGTTAGCTTTGTGAGTGCCGGCTGTCGCGTGACTGT
CGGTGATGGCAACGGAGACCTCGATCACGTGATGGCGGTGGTCCGTCGTC
TGTGGGCTCGTCCTTCGTCTGTGCCGGCTGTTCGCGTGACCGTGGGTGAT
TGTTGTTTGTGGGTGTGA