CMJ_chr8_015730.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr8_015730.1 vs. ExPASy TrEMBL
Match: A0A2H5Q9F8|A0A2H5Q9F8_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_208720 PE=4 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 9.574e-49 Identity = 92/121 (76.03%), Postives = 98/121 (80.99%), Query Frame = 0 Query: 1 MRHSLQSDENFQRKV------REMTSEVLHYYKGDFLNELPGLVDFTVVLNLSSRQKSEIQKLKKWSWKIKIAAAGNATYLHPKLAACLHPKLAACLHPKMNSLSEKIVPADDKMDELLDR 115
+ HSLQSDE+FQRKV REMTS VLHYYKGDFL+ELPGLVDFTVVLNLSSRQKSE QKLKKWS K+KIAAAG+ATY LHPKLA LHPKMNSLSEK P DDKMDELL+R
Sbjct: 554 VEHSLQSDEDFQRKVTVIKDLREMTSGVLHYYKGDFLDELPGLVDFTVVLNLSSRQKSETQKLKKWSRKMKIAAAGSATY--------LHPKLATYLHPKMNSLSEKSAPTDDKMDELLER 666
BLAST of CMJ_chr8_015730.1 vs. ExPASy TrEMBL
Match: V4S865|V4S865_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027795mg PE=4 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 1.029e-48 Identity = 92/121 (76.03%), Postives = 98/121 (80.99%), Query Frame = 0 Query: 1 MRHSLQSDENFQRKV------REMTSEVLHYYKGDFLNELPGLVDFTVVLNLSSRQKSEIQKLKKWSWKIKIAAAGNATYLHPKLAACLHPKLAACLHPKMNSLSEKIVPADDKMDELLDR 115
+ HSLQSDE+FQRKV REMTS VLHYYKGDFL+ELPGLVDFTVVLNLSSRQKSE QKLKKWS K+KIAAAG+ATY LHPKLA LHPKMNSLSEK P DDKMDELL+R
Sbjct: 552 VEHSLQSDEDFQRKVTVIKDLREMTSGVLHYYKGDFLDELPGLVDFTVVLNLSSRQKSETQKLKKWSRKMKIAAAGSATY--------LHPKLATYLHPKMNSLSEKSAPTDDKMDELLER 664
BLAST of CMJ_chr8_015730.1 vs. ExPASy TrEMBL
Match: A0A067KZZ3|A0A067KZZ3_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26769 PE=4 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.984e-32 Identity = 65/121 (53.72%), Postives = 85/121 (70.25%), Query Frame = 0 Query: 1 MRHSLQSDENFQRKV------REMTSEVLHYYKGDFLNELPGLVDFTVVLNLSSRQKSEIQKLKKWSWKIKIAAAGNATYLHPKLAACLHPKLAACLHPKMNSLSEKIVPADDKMDELLDR 115
+ H++Q D++F+RKV REMT VLHYYKGDFL+ELPGLVDFTVVLNLS RQK E++KLKKW+ K K+++ G+A YLHPKL N++SE + +D KMDE+LD+
Sbjct: 608 VEHTIQKDQDFKRKVSIIQDLREMTRNVLHYYKGDFLDELPGLVDFTVVLNLSPRQKQEVEKLKKWARKFKVSSVGSAVYLHPKL----------------NAVSENSLMSDGKMDEILDK 712
BLAST of CMJ_chr8_015730.1 vs. ExPASy TrEMBL
Match: A0A6P5XG70|A0A6P5XG70_DURZI (protein CHROMATIN REMODELING 35-like isoform X1 OS=Durio zibethinus OX=66656 GN=LOC111283160 PE=4 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 3.151e-32 Identity = 68/121 (56.20%), Postives = 84/121 (69.42%), Query Frame = 0 Query: 1 MRHSLQSDENFQRKV------REMTSEVLHYYKGDFLNELPGLVDFTVVLNLSSRQKSEIQKLKKWSWKIKIAAAGNATYLHPKLAACLHPKLAACLHPKMNSLSEKIVPADDKMDELLDR 115
+ H+LQ DENF+RKV REMTS+VLHYYKGDFL+ELPGLVDFT+VL+LS RQK E+QKLK++ K KI++ G+A YLHPKL NS SE V D KMD+LL++
Sbjct: 584 VEHTLQKDENFERKVSVIHDLREMTSKVLHYYKGDFLDELPGLVDFTLVLSLSPRQKVEVQKLKRFQRKFKISSVGSAVYLHPKL----------------NSFSENSVTTDAKMDDLLEK 688
BLAST of CMJ_chr8_015730.1 vs. ExPASy TrEMBL
Match: A0A6P5XHS9|A0A6P5XHS9_DURZI (protein CHROMATIN REMODELING 35-like isoform X3 OS=Durio zibethinus OX=66656 GN=LOC111283160 PE=4 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 3.501e-32 Identity = 68/121 (56.20%), Postives = 84/121 (69.42%), Query Frame = 0 Query: 1 MRHSLQSDENFQRKV------REMTSEVLHYYKGDFLNELPGLVDFTVVLNLSSRQKSEIQKLKKWSWKIKIAAAGNATYLHPKLAACLHPKLAACLHPKMNSLSEKIVPADDKMDELLDR 115
+ H+LQ DENF+RKV REMTS+VLHYYKGDFL+ELPGLVDFT+VL+LS RQK E+QKLK++ K KI++ G+A YLHPKL NS SE V D KMD+LL++
Sbjct: 530 VEHTLQKDENFERKVSVIHDLREMTSKVLHYYKGDFLDELPGLVDFTLVLSLSPRQKVEVQKLKRFQRKFKISSVGSAVYLHPKL----------------NSFSENSVTTDAKMDDLLEK 634
BLAST of CMJ_chr8_015730.1 vs. ExPASy TrEMBL
Match: A0A6P5XGC2|A0A6P5XGC2_DURZI (protein CHROMATIN REMODELING 35-like isoform X4 OS=Durio zibethinus OX=66656 GN=LOC111283160 PE=4 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 3.798e-32 Identity = 68/121 (56.20%), Postives = 84/121 (69.42%), Query Frame = 0 Query: 1 MRHSLQSDENFQRKV------REMTSEVLHYYKGDFLNELPGLVDFTVVLNLSSRQKSEIQKLKKWSWKIKIAAAGNATYLHPKLAACLHPKLAACLHPKMNSLSEKIVPADDKMDELLDR 115
+ H+LQ DENF+RKV REMTS+VLHYYKGDFL+ELPGLVDFT+VL+LS RQK E+QKLK++ K KI++ G+A YLHPKL NS SE V D KMD+LL++
Sbjct: 492 VEHTLQKDENFERKVSVIHDLREMTSKVLHYYKGDFLDELPGLVDFTLVLSLSPRQKVEVQKLKRFQRKFKISSVGSAVYLHPKL----------------NSFSENSVTTDAKMDDLLEK 596
BLAST of CMJ_chr8_015730.1 vs. ExPASy TrEMBL
Match: A0A6P5XGD3|A0A6P5XGD3_DURZI (protein CHROMATIN REMODELING 35-like isoform X2 OS=Durio zibethinus OX=66656 GN=LOC111283160 PE=4 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 3.973e-32 Identity = 68/121 (56.20%), Postives = 84/121 (69.42%), Query Frame = 0 Query: 1 MRHSLQSDENFQRKV------REMTSEVLHYYKGDFLNELPGLVDFTVVLNLSSRQKSEIQKLKKWSWKIKIAAAGNATYLHPKLAACLHPKLAACLHPKMNSLSEKIVPADDKMDELLDR 115
+ H+LQ DENF+RKV REMTS+VLHYYKGDFL+ELPGLVDFT+VL+LS RQK E+QKLK++ K KI++ G+A YLHPKL NS SE V D KMD+LL++
Sbjct: 531 VEHTLQKDENFERKVSVIHDLREMTSKVLHYYKGDFLDELPGLVDFTLVLSLSPRQKVEVQKLKRFQRKFKISSVGSAVYLHPKL----------------NSFSENSVTTDAKMDDLLEK 635
BLAST of CMJ_chr8_015730.1 vs. ExPASy TrEMBL
Match: A0A7J8PR64|A0A7J8PR64_GOSRA (Helicase ATP-binding domain-containing protein (Fragment) OS=Gossypium raimondii OX=29730 GN=Gorai_008770 PE=4 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 7.333e-32 Identity = 67/120 (55.83%), Postives = 81/120 (67.50%), Query Frame = 0 Query: 1 MRHSLQSDENFQRKV------REMTSEVLHYYKGDFLNELPGLVDFTVVLNLSSRQKSEIQKLKKWSWKIKIAAAGNATYLHPKLAACLHPKLAACLHPKMNSLSEKIVPADDKMDELLD 114
+ H+LQ DENF+RKV REMTS+VLHYYKGDFL+ELPGLVDFTVVL+L RQK E+ KL+++ K KI++ G+A YLHPKL NS SE DDKMDELL+
Sbjct: 390 VEHTLQKDENFERKVSVIHDLREMTSKVLHYYKGDFLDELPGLVDFTVVLSLGPRQKDEVHKLRRFQRKFKISSVGSAVYLHPKL----------------NSFSENSDTTDDKMDELLN 493
BLAST of CMJ_chr8_015730.1 vs. ExPASy TrEMBL
Match: A0A7J8ZZ66|A0A7J8ZZ66_9ROSI (Uncharacterized protein (Fragment) OS=Gossypium laxum OX=34288 GN=Golax_004879 PE=4 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.082e-31 Identity = 67/120 (55.83%), Postives = 81/120 (67.50%), Query Frame = 0 Query: 1 MRHSLQSDENFQRKV------REMTSEVLHYYKGDFLNELPGLVDFTVVLNLSSRQKSEIQKLKKWSWKIKIAAAGNATYLHPKLAACLHPKLAACLHPKMNSLSEKIVPADDKMDELLD 114
+ H+LQ DENF+RKV REMTS+VLHYYKGDFL+ELPGLVDFTVVL+L RQK E+ KL+++ K KI++ G+A YLHPKL NS SE DDKMDELL+
Sbjct: 281 VEHTLQKDENFERKVSVIHDLREMTSKVLHYYKGDFLDELPGLVDFTVVLSLGPRQKDEVHKLRRFQRKFKISSVGSAVYLHPKL----------------NSFSENSDTTDDKMDELLN 384
BLAST of CMJ_chr8_015730.1 vs. ExPASy TrEMBL
Match: A0A7J9JHK7|A0A7J9JHK7_9ROSI (Uncharacterized protein (Fragment) OS=Gossypium armourianum OX=34283 GN=Goarm_006044 PE=4 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.082e-31 Identity = 67/120 (55.83%), Postives = 81/120 (67.50%), Query Frame = 0 Query: 1 MRHSLQSDENFQRKV------REMTSEVLHYYKGDFLNELPGLVDFTVVLNLSSRQKSEIQKLKKWSWKIKIAAAGNATYLHPKLAACLHPKLAACLHPKMNSLSEKIVPADDKMDELLD 114
+ H+LQ DENF+RKV REMTS+VLHYYKGDFL+ELPGLVDFTVVL+L RQK E+ KL+++ K KI++ G+A YLHPKL NS SE DDKMDELL+
Sbjct: 281 VEHTLQKDENFERKVSVIHDLREMTSKVLHYYKGDFLDELPGLVDFTVVLSLGPRQKDEVHKLRRFQRKFKISSVGSAVYLHPKL----------------NSFSENSDTTDDKMDELLN 384
BLAST of CMJ_chr8_015730.1 vs. ExPASy Swiss-Prot
Match: CHR35_ARATH (Protein CHROMATIN REMODELING 35 OS=Arabidopsis thaliana OX=3702 GN=DRD1 PE=1 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.510e-25 Identity = 49/85 (57.65%), Postives = 64/85 (75.29%), Query Frame = 0 Query: 1 MRHSLQSDENFQRKV------REMTSEVLHYYKGDFLNELPGLVDFTVVLNLSSRQKSEIQKLKKWSWKIKIAAAGNATYLHPKL 79
+ H+LQ E+F K+ REMT +VLHYYKGDFL+ELPGL DFTVVLNLS +Q +E++KL++ K K++A G+A YLHPKL
Sbjct: 582 VEHTLQKSEDFTVKIKVIQDLREMTKKVLHYYKGDFLDELPGLADFTVVLNLSPKQLNEVKKLRREKRKFKVSAVGSAIYLHPKL 666
BLAST of CMJ_chr8_015730.1 vs. Araport11
Match: AT2G16390.2 (| SNF2 domain-containing protein / helicase domain-containing protein | Chr2:7097403-7101182 FORWARD LENGTH=891 | 201606) HSP 1 Score: 103.219 bits (256), Expect = 1.416e-26 Identity = 49/85 (57.65%), Postives = 64/85 (75.29%), Query Frame = 0 Query: 1 MRHSLQSDENFQRKV------REMTSEVLHYYKGDFLNELPGLVDFTVVLNLSSRQKSEIQKLKKWSWKIKIAAAGNATYLHPKL 79
+ H+LQ E+F K+ REMT +VLHYYKGDFL+ELPGL DFTVVLNLS +Q +E++KL++ K K++A G+A YLHPKL
Sbjct: 585 VEHTLQKSEDFTVKIKVIQDLREMTKKVLHYYKGDFLDELPGLADFTVVLNLSPKQLNEVKKLRREKRKFKVSAVGSAIYLHPKL 669
BLAST of CMJ_chr8_015730.1 vs. Araport11
Match: AT2G16390.1 (| SNF2 domain-containing protein / helicase domain-containing protein | Chr2:7097638-7101182 FORWARD LENGTH=888 | 201606) HSP 1 Score: 102.834 bits (255), Expect = 1.545e-26 Identity = 49/85 (57.65%), Postives = 64/85 (75.29%), Query Frame = 0 Query: 1 MRHSLQSDENFQRKV------REMTSEVLHYYKGDFLNELPGLVDFTVVLNLSSRQKSEIQKLKKWSWKIKIAAAGNATYLHPKL 79
+ H+LQ E+F K+ REMT +VLHYYKGDFL+ELPGL DFTVVLNLS +Q +E++KL++ K K++A G+A YLHPKL
Sbjct: 582 VEHTLQKSEDFTVKIKVIQDLREMTKKVLHYYKGDFLDELPGLADFTVVLNLSPKQLNEVKKLRREKRKFKVSAVGSAIYLHPKL 666
BLAST of CMJ_chr8_015730.1 vs. Araport11
Match: AT2G21450.1 (| chromatin remodeling 34 | Chr2:9179622-9182356 REVERSE LENGTH=816 | 201606) HSP 1 Score: 71.633 bits (174), Expect = 1.307e-15 Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 0 Query: 4 SLQSDENFQRK------VREMTSEVLHYYKGDFLNELPGLVDFTVVLNLSSRQKSEIQKLKKWSWKIKIAAAGNATYLHPKLAACLH 84
+LQ NF K +REMT +LHY+K DF LPGL +FTV+LNLSS Q+ E++ L+K K + G A Y+HPKL + L
Sbjct: 502 TLQRSTNFSAKASLIKDLREMTRNILHYHKADFSGLLPGLSEFTVMLNLSSIQRDEVKGLRKMEL-FKQISLGAALYIHPKLKSFLE 587
BLAST of CMJ_chr8_015730.1 vs. Araport11
Match: AT2G21450.2 (| chromatin remodeling 34 | Chr2:9179622-9182785 REVERSE LENGTH=823 | 201606) HSP 1 Score: 71.633 bits (174), Expect = 1.321e-15 Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 0 Query: 4 SLQSDENFQRK------VREMTSEVLHYYKGDFLNELPGLVDFTVVLNLSSRQKSEIQKLKKWSWKIKIAAAGNATYLHPKLAACLH 84
+LQ NF K +REMT +LHY+K DF LPGL +FTV+LNLSS Q+ E++ L+K K + G A Y+HPKL + L
Sbjct: 509 TLQRSTNFSAKASLIKDLREMTRNILHYHKADFSGLLPGLSEFTVMLNLSSIQRDEVKGLRKMEL-FKQISLGAALYIHPKLKSFLE 594
BLAST of CMJ_chr8_015730.1 vs. Araport11
Match: AT2G21450.3 (| chromatin remodeling 34 | Chr2:9179622-9182011 REVERSE LENGTH=725 | 201606) HSP 1 Score: 71.633 bits (174), Expect = 1.333e-15 Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 0 Query: 4 SLQSDENFQRK------VREMTSEVLHYYKGDFLNELPGLVDFTVVLNLSSRQKSEIQKLKKWSWKIKIAAAGNATYLHPKLAACLH 84
+LQ NF K +REMT +LHY+K DF LPGL +FTV+LNLSS Q+ E++ L+K K + G A Y+HPKL + L
Sbjct: 411 TLQRSTNFSAKASLIKDLREMTRNILHYHKADFSGLLPGLSEFTVMLNLSSIQRDEVKGLRKMEL-FKQISLGAALYIHPKLKSFLE 496 The following BLAST results are available for this feature:
BLAST of CMJ_chr8_015730.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr8_015730.1 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 1 Position : 0 Zoom : x 1
BLAST of CMJ_chr8_015730.1 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 5 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr8_015730.1_cmj_v1 ID=CMJ_chr8_015730.1_cmj_v1; Name=CMJ_chr8_015730.1; organism=Citrus maxima; type=mRNA; length=348bpback to top protein sequence of CMJ_chr8_015730.1_cmj_v1 >CMJ_chr8_015730.1_cmj_v1 ID=CMJ_chr8_015730.1_cmj_v1; Name=CMJ_chr8_015730.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=116bpback to top mRNA from alignment at chr8:28428506..28428911- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=406bp; location=Sequence derived from: chr8:28428506..28428911- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr8:28428506..28428911- >CMJ_chr8_015730.1_cmj_v1 ID=CMJ_chr8_015730.1_cmj_v1; Name=CMJ_chr8_015730.1; organism=Citrus maxima; type=CDS; length=348bp; location=Sequence derived from: chr8:28428506..28428911- (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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