CMJ_chr8_016340.1 | Citrus Genome Database

Transcript Overview


Name	CMJ_chr8_016340.1
Unique Name	CMJ_chr8_016340.1_cmj_v1
Type	mRNA
Organism	Citrus maxima (Pomelo, pummelo)
Sequence length	147

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus maxima Cupi Majiayou v1.0 genome	2023-05-10
InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins	2023-05-12
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11	2023-05-15

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ccrcmjL352	Citrus australasica CRC3672 genome v1	Citrus australasica
caacmjL195	Citrus australasica cv. AZM genome v1.0	Citrus australasica
aeacmjL422	Aegle marmelos cv. AEG genome v1.0	Aegle marmelos
clxcmjL196	Citrus limon cv. Xiangshui genome v1.0	Citrus limon

Orthologs


Gene/Transcript	Assembly	Species
Aeg117480.1	Aegle marmelos cv. AEG genome v1.0	Aegle marmelos
Egl095270.1	Citrus australasica cv. AZM genome v1.0	Citrus australasica
Cau_v1.primary_g23103.t1	Citrus australasica CRC3672 genome v1	Citrus australasica
evm.model.ctg54.126	Citrus limon cv. Xiangshui genome v1.0	Citrus limon

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CMJ_chr8_016340	CMJ_chr8_016340_cmj_v1	Citrus maxima	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr8_016340.1.exon5	CMJ_chr8_016340.1.exon5_cmj_v1	Citrus maxima	exon
CMJ_chr8_016340.1.exon4	CMJ_chr8_016340.1.exon4_cmj_v1	Citrus maxima	exon
CMJ_chr8_016340.1.exon3	CMJ_chr8_016340.1.exon3_cmj_v1	Citrus maxima	exon
CMJ_chr8_016340.1.exon2	CMJ_chr8_016340.1.exon2_cmj_v1	Citrus maxima	exon
CMJ_chr8_016340.1.exon1	CMJ_chr8_016340.1.exon1_cmj_v1	Citrus maxima	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr8_016340.1.utr3.3	CMJ_chr8_016340.1.utr3.3_cmj_v1	Citrus maxima	three_prime_UTR
CMJ_chr8_016340.1.utr3.2	CMJ_chr8_016340.1.utr3.2_cmj_v1	Citrus maxima	three_prime_UTR
CMJ_chr8_016340.1.utr3.1	CMJ_chr8_016340.1.utr3.1_cmj_v1	Citrus maxima	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr8_016340.1.cds.1	CMJ_chr8_016340.1.cds.1_cmj_v1	Citrus maxima	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr8_016340.1.utr5.3	CMJ_chr8_016340.1.utr5.3_cmj_v1	Citrus maxima	five_prime_UTR
CMJ_chr8_016340.1.utr5.2	CMJ_chr8_016340.1.utr5.2_cmj_v1	Citrus maxima	five_prime_UTR
CMJ_chr8_016340.1.utr5.1	CMJ_chr8_016340.1.utr5.1_cmj_v1	Citrus maxima	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr8_016340.1_cmj_v1	CMJ_chr8_016340.1_cmj_v1	Citrus maxima	polypeptide
CMJ_chr8_016340.1_cmj_v1	CMJ_chr8_016340.1_cmj_v1-protein	Citrus maxima	polypeptide

Homology

[Close]

BLAST of CMJ_chr8_016340.1 vs. ExPASy TrEMBL
Match: A0A2H5N4D0|A0A2H5N4D0_CITUN (NmrA domain-containing protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_276800 PE=4 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.085e-24
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 0

Query:    1 MILSIGHSAYVLGDQTNFEIEPSFGVETTELYPDVNYTTVDEYLNQFI 48
            MIL IGHSAYVLGDQTNFEIEPSFGVE TELYPDVNYTTVDEYLNQFI
Sbjct:   75 MILPIGHSAYVLGDQTNFEIEPSFGVEATELYPDVNYTTVDEYLNQFI 122

[Close]

BLAST of CMJ_chr8_016340.1 vs. ExPASy TrEMBL
Match: A0A067D8Z9|A0A067D8Z9_CITSI (NmrA domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0467791mg PE=4 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.085e-24
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 0

Query:    1 MILSIGHSAYVLGDQTNFEIEPSFGVETTELYPDVNYTTVDEYLNQFI 48
            MIL IGHSAYVLGDQTNFEIEPSFGVE TELYPDVNYTTVDEYLNQFI
Sbjct:   75 MILPIGHSAYVLGDQTNFEIEPSFGVEATELYPDVNYTTVDEYLNQFI 122

[Close]

BLAST of CMJ_chr8_016340.1 vs. ExPASy TrEMBL
Match: V4SCG8|V4SCG8_CITCL (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10030072mg PE=4 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 9.553e-24
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 0

Query:    1 MILSIGHSAYVLGDQTNFEIEPSFGVETTELYPDVNYTTVDEYLNQFI 48
            MIL IGHSAYVLGDQTNFEIEPSFGVE TELYPDVNYTTVDEYLNQFI
Sbjct:  212 MILPIGHSAYVLGDQTNFEIEPSFGVEATELYPDVNYTTVDEYLNQFI 259

[Close]

BLAST of CMJ_chr8_016340.1 vs. ExPASy TrEMBL
Match: V4RQ37|V4RQ37_CITCL (NmrA domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10029870mg PE=4 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.818e-23
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 0

Query:    1 MILSIGHSAYVLGDQTNFEIEPSFGVETTELYPDVNYTTVDEYLNQFI 48
            M+L IGHSAYVLGDQTNFEIEPSFGVE TELYPD NYTTVDEYLNQFI
Sbjct:  245 MLLPIGHSAYVLGDQTNFEIEPSFGVEATELYPDANYTTVDEYLNQFI 292

[Close]

BLAST of CMJ_chr8_016340.1 vs. ExPASy TrEMBL
Match: A0A2H5N2H6|A0A2H5N2H6_CITUN (NmrA domain-containing protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_276810 PE=4 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.504e-22
Identity = 43/46 (93.48%), Postives = 43/46 (93.48%), Query Frame = 0

Query:    1 MILSIGHSAYVLGDQTNFEIEPSFGVETTELYPDVNYTTVDEYLNQ 46
            MIL IGHSAYVLGDQTNFEIEPSFGVE TELYPDVNYTTVDEYLN 
Sbjct:   75 MILPIGHSAYVLGDQTNFEIEPSFGVEATELYPDVNYTTVDEYLNH 120

[Close]

BLAST of CMJ_chr8_016340.1 vs. ExPASy TrEMBL
Match: A0A7J7NVV3|A0A7J7NVV3_9MAGN (NmrA domain-containing protein OS=Kingdonia uniflora OX=39325 GN=GIB67_020402 PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.990e-20
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 0

Query:    1 MILSIGHSAYVLGDQTNFEIEPSFGVETTELYPDVNYTTVDEYLNQFI 48
            +ILSIGHS +V GDQTNFEIEPSFGVE +ELYPDV YTTVDEYLNQF+
Sbjct:  258 VILSIGHSVFVKGDQTNFEIEPSFGVEASELYPDVKYTTVDEYLNQFV 305

[Close]

BLAST of CMJ_chr8_016340.1 vs. ExPASy TrEMBL
Match: A0A2K2AV79|A0A2K2AV79_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G156700 PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.063e-19
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 0

Query:    1 MILSIGHSAYVLGDQTNFEIEPSFGVETTELYPDVNYTTVDEYLNQFI 48
            +ILSI HS +V GD TNFEIEPSFGVE +ELYPDV YTTVDEYLNQF+
Sbjct:   16 VILSIRHSVFVKGDHTNFEIEPSFGVEASELYPDVKYTTVDEYLNQFV 63

[Close]

BLAST of CMJ_chr8_016340.1 vs. ExPASy TrEMBL
Match: A0A7J7LKE8|A0A7J7LKE8_9MAGN (Uncharacterized protein OS=Kingdonia uniflora OX=39325 GN=GIB67_041171 PE=4 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.323e-19
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 0

Query:    1 MILSIGHSAYVLGDQTNFEIEPSFGVETTELYPDVNYTTVDEYLNQFI 48
            ++LS GHS +V GDQTNFEIEPSFGVE +ELYPDV YT VDEYLNQF+
Sbjct:    8 VLLSYGHSVFVKGDQTNFEIEPSFGVEASELYPDVKYTVVDEYLNQFV 55

[Close]

BLAST of CMJ_chr8_016340.1 vs. ExPASy TrEMBL
Match: A0A3G4R967|A0A3G4R967_ECHPA (Phenylcoumaran benzylic ether reductase-like protein I (Fragment) OS=Echinocactus platyacanthus OX=130113 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.519e-19
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 0

Query:    1 MILSIGHSAYVLGDQTNFEIEPSFGVETTELYPDVNYTTVDEYLNQFI 48
            +++SIGHS +V GDQTNF+IEPSFGVE +ELYPDV YTTVDEYLNQF+
Sbjct:  131 VVMSIGHSVFVKGDQTNFDIEPSFGVEASELYPDVKYTTVDEYLNQFV 178

[Close]

BLAST of CMJ_chr8_016340.1 vs. ExPASy TrEMBL
Match: A0A7J7L4J9|A0A7J7L4J9_9MAGN (NmrA domain-containing protein OS=Kingdonia uniflora OX=39325 GN=GIB67_027865 PE=4 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.609e-19
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 0

Query:    1 MILSIGHSAYVLGDQTNFEIEPSFGVETTELYPDVNYTTVDEYLNQFI 48
            ++LS GHS +V GDQTNFEIEPSFGVET+ELYPDV YT VDEYLNQF+
Sbjct:  134 VLLSYGHSVFVKGDQTNFEIEPSFGVETSELYPDVKYTAVDEYLNQFV 181

[Close]

BLAST of CMJ_chr8_016340.1 vs. ExPASy Swiss-Prot
Match: PCBER_POPTR (Phenylcoumaran benzylic ether reductase POP1 OS=Populus trichocarpa OX=3694 GN=PCBER PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.142e-20
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 0

Query:    1 MILSIGHSAYVLGDQTNFEIEPSFGVETTELYPDVNYTTVDEYLNQFI 48
            ++LSIGHS +V GD TNFEIEPSFGVE +ELYPDV YTTVDEYL QF+
Sbjct:  259 VVLSIGHSVFVKGDHTNFEIEPSFGVEASELYPDVKYTTVDEYLKQFV 306

[Close]

BLAST of CMJ_chr8_016340.1 vs. ExPASy Swiss-Prot
Match: PYRC5_PYRCO (Phenylcoumaran benzylic ether reductase Pyrc5 OS=Pyrus communis OX=23211 GN=PYRC5 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.845e-20
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 0

Query:    1 MILSIGHSAYVLGDQTNFEIEPSFGVETTELYPDVNYTTVDEYLNQFI 48
            +ILSI H+ +V GD TNFEIEPSFGVE T LYPDV YTTVDEYLNQF+
Sbjct:  261 VILSISHAVFVKGDHTNFEIEPSFGVEATALYPDVKYTTVDEYLNQFV 308

[Close]

BLAST of CMJ_chr8_016340.1 vs. ExPASy Swiss-Prot
Match: ALL12_OLEEU (Isoflavone reductase-like protein OS=Olea europaea OX=4146 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.487e-18
Identity = 33/48 (68.75%), Postives = 43/48 (89.58%), Query Frame = 0

Query:    1 MILSIGHSAYVLGDQTNFEIEPSFGVETTELYPDVNYTTVDEYLNQFI 48
            ++++I HSA+V GD TNF+IEPSFGVE +ELYPDV YTTV+EYL+QF+
Sbjct:  261 IVMAINHSAFVKGDLTNFKIEPSFGVEASELYPDVKYTTVEEYLDQFV 308

[Close]

BLAST of CMJ_chr8_016340.1 vs. ExPASy Swiss-Prot
Match: IFRH_MAIZE (Isoflavone reductase homolog IRL OS=Zea mays OX=4577 GN=IRL PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.959e-18
Identity = 32/48 (66.67%), Postives = 43/48 (89.58%), Query Frame = 0

Query:    1 MILSIGHSAYVLGDQTNFEIEPSFGVETTELYPDVNYTTVDEYLNQFI 48
            +IL+IGH+A+V G+QT FEI+P+ GV+ +ELYPDV YTTVDEYLN+F+
Sbjct:  262 IILAIGHAAFVRGEQTGFEIDPAKGVDASELYPDVKYTTVDEYLNRFL 309

[Close]

BLAST of CMJ_chr8_016340.1 vs. ExPASy Swiss-Prot
Match: BETV6_BETPN (Phenylcoumaran benzylic ether reductase Betv6 OS=Betula pendula OX=3505 GN=BETV6 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.401e-17
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 0

Query:    1 MILSIGHSAYVLGDQTNFEIEPSFGVETTELYPDVNYTTVDEYLNQFI 48
            +IL+I HS +V GD TNFEIE SFGVE +ELYPDV YTTV+EYL QF+
Sbjct:  261 VILAINHSVFVKGDHTNFEIEASFGVEASELYPDVKYTTVEEYLQQFV 308

[Close]

BLAST of CMJ_chr8_016340.1 vs. ExPASy Swiss-Prot
Match: EGS1_PETHY (Eugenol synthase 1 OS=Petunia hybrida OX=4102 GN=EGS1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.201e-17
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 0

Query:    1 MILSIGHSAYVLGDQTNFEIEPSFGVETTELYPDVNYTTVDEYLNQF 47
            +IL+I HS +V GDQTNF IEPSFGVE +ELYPDV YTTV+EYL+ F
Sbjct:  261 IILAINHSTFVKGDQTNFVIEPSFGVEASELYPDVKYTTVEEYLSHF 307

[Close]

BLAST of CMJ_chr8_016340.1 vs. ExPASy Swiss-Prot
Match: TP7_TOBAC (Phenylcoumaran benzylic ether reductase TP7 OS=Nicotiana tabacum OX=4097 GN=TP7 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.903e-17
Identity = 32/48 (66.67%), Postives = 41/48 (85.42%), Query Frame = 0

Query:    1 MILSIGHSAYVLGDQTNFEIEPSFGVETTELYPDVNYTTVDEYLNQFI 48
            +IL+I H+ +V GDQTNF+IEPSFGVE +ELYPDV YTTV++YL  F+
Sbjct:  261 VILAINHATFVKGDQTNFKIEPSFGVEASELYPDVKYTTVEDYLGHFV 308

[Close]

BLAST of CMJ_chr8_016340.1 vs. ExPASy Swiss-Prot
Match: EGS2_CLABR (Eugenol synthase 2 OS=Clarkia breweri OX=36903 GN=EGS2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.902e-17
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 0

Query:    1 MILSIGHSAYVLGDQTNFEIEPSFGVETTELYPDVNYTTVDEYLNQFI 48
            + L I HS +V GD TNFEIEPSFGVE +ELYP+V YTTV+EYL+QF+
Sbjct:  262 IFLGINHSVFVKGDHTNFEIEPSFGVEASELYPEVKYTTVEEYLDQFV 309

[Close]

BLAST of CMJ_chr8_016340.1 vs. ExPASy Swiss-Prot
Match: IFRH_SOLTU (Isoflavone reductase homolog OS=Solanum tuberosum OX=4113 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.032e-16
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 0

Query:    3 LSIGHSAYVLGDQTNFEIEPSFGVETTELYPDVNYTTVDEYLNQFI 48
            LSI H+A+V GD TNFEIEPSFGVE +E+YPDV YT +DE LNQ++
Sbjct:  263 LSIYHTAFVKGDHTNFEIEPSFGVEASEVYPDVKYTPIDEILNQYV 308

[Close]

BLAST of CMJ_chr8_016340.1 vs. ExPASy Swiss-Prot
Match: PBER1_ARATH (Phenylcoumaran benzylic ether reductase 1 OS=Arabidopsis thaliana OX=3702 GN=PCBER1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.596e-15
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 0

Query:    1 MILSIGHSAYVLGDQTNFEIEPSFGVETTELYPDVNYTTVDEYLNQFI 48
            ++LS+ H  +V G  T+FEIEPSFGVE +ELYPDV YTTVDE LNQ++
Sbjct:  261 VMLSLCHCVFVKGGHTSFEIEPSFGVEASELYPDVKYTTVDEILNQYV 308

[Close]

BLAST of CMJ_chr8_016340.1 vs. Araport11
Match: AT1G75290.1 (| NAD(P)-binding Rossmann-fold superfamily protein | Chr1:28253890-28255173 FORWARD LENGTH=318 | 201606)

HSP 1 Score: 71.2478 bits (173), Expect = 9.009e-17
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = 0

Query:    1 MILSIGHSAYVLGDQTNFEIEPSFGVETTELYPDVNYTTVDEYLNQF 47
            ++LSI H+ +V GDQTNF IEPSFG E +ELYPD+ YT++DEYL+ F
Sbjct:  264 VLLSINHAVFVKGDQTNFTIEPSFGFEASELYPDIKYTSIDEYLSYF 310

[Close]

BLAST of CMJ_chr8_016340.1 vs. Araport11
Match: AT1G75290.2 (| NAD(P)-binding Rossmann-fold superfamily protein | Chr1:28253809-28255173 FORWARD LENGTH=345 | 201606)

HSP 1 Score: 71.2478 bits (173), Expect = 1.043e-16
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = 0

Query:    1 MILSIGHSAYVLGDQTNFEIEPSFGVETTELYPDVNYTTVDEYLNQF 47
            ++LSI H+ +V GDQTNF IEPSFG E +ELYPD+ YT++DEYL+ F
Sbjct:  291 VLLSINHAVFVKGDQTNFTIEPSFGFEASELYPDIKYTSIDEYLSYF 337

[Close]

BLAST of CMJ_chr8_016340.1 vs. Araport11
Match: AT4G39230.1 (| NmrA-like negative transcriptional regulator family protein | Chr4:18266024-18267604 REVERSE LENGTH=308 | 201606)

HSP 1 Score: 70.4774 bits (171), Expect = 1.633e-16
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 0

Query:    1 MILSIGHSAYVLGDQTNFEIEPSFGVETTELYPDVNYTTVDEYLNQFI 48
            ++LS+ H  +V G  T+FEIEPSFGVE +ELYPDV YTTVDE LNQ++
Sbjct:  261 VMLSLCHCVFVKGGHTSFEIEPSFGVEASELYPDVKYTTVDEILNQYV 308

[Close]

BLAST of CMJ_chr8_016340.1 vs. Araport11
Match: AT1G75280.1 (| NmrA-like negative transcriptional regulator family protein | Chr1:28252030-28253355 FORWARD LENGTH=310 | 201606)

HSP 1 Score: 65.4698 bits (158), Expect = 1.054e-14
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 0

Query:    1 MILSIGHSAYVLGDQTNFEIEPSFGVETTELYPDVNYTTVDEYLNQF 47
            ++LSI H+ +V GD TN  IEPSFGVE +ELYPDV YT+VDEYL+ F
Sbjct:  264 VVLSINHAVFVNGD-TNISIEPSFGVEASELYPDVKYTSVDEYLSYF 309

[Close]

BLAST of CMJ_chr8_016340.1 vs. Araport11
Match: AT1G75300.1 (| NmrA-like negative transcriptional regulator family protein | Chr1:28255552-28256927 FORWARD LENGTH=322 | 201606)

HSP 1 Score: 64.6994 bits (156), Expect = 1.994e-14
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 0

Query:    4 SIGHSAYVLGDQTNFEIEPSFGVETTELYPDVNYTTVDEYLNQF 47
            SI H+ +V GDQT+F IEP FG E + LYPDV YT++DEYL+QF
Sbjct:  278 SINHAVFVKGDQTSFTIEPWFGEEASVLYPDVKYTSIDEYLSQF 321

[Close]

BLAST of CMJ_chr8_016340.1 vs. Araport11
Match: AT1G19540.1 (| NmrA-like negative transcriptional regulator family protein | Chr1:6765713-6767247 FORWARD LENGTH=310 | 201606)

HSP 1 Score: 59.6918 bits (143), Expect = 1.371e-12
Identity = 26/42 (61.90%), Postives = 34/42 (80.95%), Query Frame = 0

Query:    7 HSAYVLGDQTNFEIEPSFGVETTELYPDVNYTTVDEYLNQFI 48
            H+  V  D T+F I+PSFGVE +ELYP+V YT+VDE+LN+FI
Sbjct:  269 HTILVKSDFTSFTIDPSFGVEASELYPEVKYTSVDEFLNRFI 310

The following BLAST results are available for this feature:

BLAST of CMJ_chr8_016340.1 vs. ExPASy TrEMBL
BLAST of CMJ_chr8_016340.1 vs. ExPASy Swiss-Prot
BLAST of CMJ_chr8_016340.1 vs. Araport11

BLAST of CMJ_chr8_016340.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL)
Total hits: 10

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A2H5N4D0\|A0A2H5N4D0_CITUN	1.085e-24	95.83	NmrA domain-containing protein (Fragment) OS=Citru...	[more]
A0A067D8Z9\|A0A067D8Z9_CITSI	1.085e-24	95.83	NmrA domain-containing protein (Fragment) OS=Citru...	[more]
V4SCG8\|V4SCG8_CITCL	9.553e-24	95.83	Uncharacterized protein (Fragment) OS=Citrus cleme...	[more]
V4RQ37\|V4RQ37_CITCL	6.818e-23	91.67	NmrA domain-containing protein OS=Citrus clementin...	[more]
A0A2H5N2H6\|A0A2H5N2H6_CITUN	2.504e-22	93.48	NmrA domain-containing protein (Fragment) OS=Citru...	[more]
A0A7J7NVV3\|A0A7J7NVV3_9MAGN	6.990e-20	83.33	NmrA domain-containing protein OS=Kingdonia uniflo...	[more]
A0A2K2AV79\|A0A2K2AV79_POPTR	1.063e-19	79.17	Uncharacterized protein OS=Populus trichocarpa OX=...	[more]
A0A7J7LKE8\|A0A7J7LKE8_9MAGN	1.323e-19	77.08	Uncharacterized protein OS=Kingdonia uniflora OX=3...	[more]
A0A3G4R967\|A0A3G4R967_ECHPA	1.519e-19	77.08	Phenylcoumaran benzylic ether reductase-like prote...	[more]
A0A7J7L4J9\|A0A7J7L4J9_9MAGN	1.609e-19	79.17	NmrA domain-containing protein OS=Kingdonia uniflo...	[more]

BLAST of CMJ_chr8_016340.1 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
PCBER_POPTR	1.142e-20	77.08	Phenylcoumaran benzylic ether reductase POP1 OS=Po...	[more]
PYRC5_PYRCO	4.845e-20	77.08	Phenylcoumaran benzylic ether reductase Pyrc5 OS=P...	[more]
ALL12_OLEEU	2.487e-18	68.75	Isoflavone reductase-like protein OS=Olea europaea...	[more]
IFRH_MAIZE	5.959e-18	66.67	Isoflavone reductase homolog IRL OS=Zea mays OX=45...	[more]
BETV6_BETPN	1.401e-17	70.83	Phenylcoumaran benzylic ether reductase Betv6 OS=B...	[more]
EGS1_PETHY	2.201e-17	72.34	Eugenol synthase 1 OS=Petunia hybrida OX=4102 GN=E...	[more]
TP7_TOBAC	2.903e-17	66.67	Phenylcoumaran benzylic ether reductase TP7 OS=Nic...	[more]
EGS2_CLABR	3.902e-17	68.75	Eugenol synthase 2 OS=Clarkia breweri OX=36903 GN=...	[more]
IFRH_SOLTU	2.032e-16	69.57	Isoflavone reductase homolog OS=Solanum tuberosum ...	[more]
PBER1_ARATH	1.596e-15	64.58	Phenylcoumaran benzylic ether reductase 1 OS=Arabi...	[more]

BLAST of CMJ_chr8_016340.1 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11)
Total hits: 6

Position :

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Match Name	E-value	Identity	Description
AT1G75290.1	9.009e-17	63.83	\| NAD(P)-binding Rossmann-fold superfamily protein...	[more]
AT1G75290.2	1.043e-16	63.83	\| NAD(P)-binding Rossmann-fold superfamily protein...	[more]
AT4G39230.1	1.633e-16	64.58	\| NmrA-like negative transcriptional regulator fam...	[more]
AT1G75280.1	1.054e-14	65.96	\| NmrA-like negative transcriptional regulator fam...	[more]
AT1G75300.1	1.994e-14	63.64	\| NmrA-like negative transcriptional regulator fam...	[more]
AT1G19540.1	1.371e-12	61.90	\| NmrA-like negative transcriptional regulator fam...	[more]

InterPro

Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.25.10		coord: 1..48 e-value: 5.5E-11 score: 44.6
None	No IPR available	PANTHER	PTHR43349	PINORESINOL REDUCTASE-RELATED	coord: 1..48

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:28938006..28939881-
coding sequence from alignment at chr8:28938006..28939881-

mRNA sequence

>CMJ_chr8_016340.1_cmj_v1 ID=CMJ_chr8_016340.1_cmj_v1; Name=CMJ_chr8_016340.1; organism=Citrus maxima; type=mRNA; length=147bp
ATGATATTATCTATTGGGCACTCTGCCTATGTCTTGGGAGATCAGACCAA
CTTCGAAATTGAACCTTCATTTGGAGTAGAGACAACAGAGCTTTATCCAG
ATGTCAACTACACTACTGTGGATGAGTACCTCAATCAGTTCATATAA

protein sequence of CMJ_chr8_016340.1_cmj_v1

>CMJ_chr8_016340.1_cmj_v1 ID=CMJ_chr8_016340.1_cmj_v1; Name=CMJ_chr8_016340.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=49bp
MILSIGHSAYVLGDQTNFEIEPSFGVETTELYPDVNYTTVDEYLNQFI*

mRNA from alignment at chr8:28938006..28939881-

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=1876bp; location=Sequence derived from: chr8:28938006..28939881- (Citrus maxima
CCGAAAGTGCAGAAACAGATAAACAGCGCTCGCGCTCTCCCCAGTCTCTT
ATCTTTAACGGTATCCAGTCAACGATCTCAAAGTGTTCAAAATTATTATC
ACTTTTTCTCACAGCCTGGAGCCACAGCTCCTCCAAGAGATAAAGTGGTC
ATCGTAGGTGATGGAAATGCAAAAGGTAAGGCGCTTCTTGATACATTTAC
TCTGTACACGCAATGTGTGGTTACTGTAGTTATATAGAATGAACTTGAAA
AAGCATGAATAAGGGGATGATTTTAACACATTAATTCACCAACATTAATC
GGAAAAGATCAGTTGCCGCTTCCAATCAGAGTAATTTCTTCGGCAATAGC
CAAATTATTGATATTTGATCTTGACACTGTAGTTAAATGAATGTGACTGG
TTTTGTCATTTGATCCCCAGCAATTTTTAATAAGATGATATTGGAACCTA
TACTATCAAAGCAGTGGATGATCCAAGAACACTGAACAAAATACTTTACA
TCAGACCCCGTGGGAGGAAAAGATTGGCAAAGCCCTTGACAGGGTCTATG
TTACAGAGGAGCAACTTCTGAAAAAAATTCAAGGTTAGTTAGAACGATCA
CGTTATTCGTTACTGATGACAACACATGGAGAAATTTTCCTTGGTCTTAT
CAAGTGGATACGTGTAACTGACCGATGATGGAAATTTTTTTCCTTCTCCA
AAATGCAATAGAGTCTAATTGGTTTCAACAATCTCAAGAACATCTATTCA
TGGTTGTGTTGTTTGAAATCTGTATGAATCAGTTTTCTTTCTAGATCTCA
GATTGCTCGCAAGGATGTCAAGTTTTTATGATGCTTGCCTGTTTTCCTGT
GTTCACAGAAGCTTCATATCCACTCAATATGATATTATCTATTGGGCACT
CTGCCTATGTCTTGGGAGATCAGACCAACTTCGAAATTGAACCTTCATTT
GGAGTAGAGACAACAGAGCTTTATCCAGATGTCAACTACACTACTGTGGA
TGAGTACCTCAATCAGTTCATATAAACCTTCTGAGATGAGCAGCAGGATC
CTAACCAAAAGTTGGGTGGTTTCCATTCCGGGTTCTGTGGTATAAAGATA
GCGGCTGGCTTTCCCTGCTTTTGCCAGTTCAATGAAGTTTGTAAGATGAT
GTTTATTTAGACTATACTAGCAAAGAGCAAGTTGCCTTTCTTGTCAAGAA
GCCAAGCTCTGGCATTGTTTTATGCTAATTTTTCACAATAATATTGGTAT
TCACGAATTTTTTTTTCTTTTTTAATTTCACATCTCCATCATCAGTTGAG
ATACCCTGTTGTATGGTACTAACTTCGATTTTCCTTGTGCTCCACTTGCT
GTCTCTGCAGATTCGTAAAAGATCATTCATGGATAAGATCAGAACATCAA
TGTGATACAGTATGTATTAAGAACTCCCACATGGGTCTTGTTCTAGTTCT
GGTTATGGTACGAATACGATATGAAACATGCTTCATTTCCATAATTTGAG
ACTTTTTTTTTTTTTTTTTTGGTCTTATCCACGAGGTATCTTAGGAATGG
CCCTAATTGTGGGAGTCACTTTTAAACCCGTACTACAATTCAGATTAGAA
GTCCCTTTCGACCAAGGAGGCGCAGTTATCCCAACAAAGCGACTTTCCTG
CGACTGAATCAAGAAAAGAAACCCACCAAATCACTTAAGGAGACTCTATA
ACCAATGAAACCAACACTTTATTGGTAATTTAAGACATTCTTTCATGTTA
CAGTTCCATAACTTGAGACATTCTTGTTCAACAATTATCATTGCGTTAAA
ACAGTGACCAATCCACATCAGCCACCTTTTGATTCTTCACTTTTTTTTTT
TGGTCTGCATTTAATGTGCATTAATA

Coding sequence (CDS) from alignment at chr8:28938006..28939881-

>CMJ_chr8_016340.1_cmj_v1 ID=CMJ_chr8_016340.1_cmj_v1; Name=CMJ_chr8_016340.1; organism=Citrus maxima; type=CDS; length=147bp; location=Sequence derived from: chr8:28938006..28939881- (Citrus maxima
ATGATATTATCTATTGGGCACTCTGCCTATGTCTTGGGAGATCAGACCAA
CTTCGAAATTGAACCTTCATTTGGAGTAGAGACAACAGAGCTTTATCCAG
ATGTCAACTACACTACTGTGGATGAGTACCTCAATCAGTTCATATAA