CMJ_chr8_017060.1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr8_017060.1 vs. ExPASy TrEMBL
Match: A0A2H5PY29|A0A2H5PY29_CITUN (Retrotrans_gag domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_178110 PE=4 SV=1) HSP 1 Score: 322.783 bits (826), Expect = 5.569e-108 Identity = 155/156 (99.36%), Postives = 156/156 (100.00%), Query Frame = 0 Query: 1 MAMIIIKTVEVVGSGECADCALTNIKPSKAFSGLRVTIDCKSENGNGEFKTRRAGELDVDGKFKASLPEEIVENGKLKEECYAILHSASGTPCPAYDGLESSKLVLKEKSNEKHTFGLAKYISMRRRGRPRTRSIAELGSPPQTENREEPLEETVG 156 MAMIIIKTVEVVGSGECADCALTNIKPSKAFSGLRVTIDCKSENGNGEFKTRRAGELDVDGKFKASLPEEIVENGKLKEECYA+LHSASGTPCPAYDGLESSKLVLKEKSNEKHTFGLAKYISMRRRGRPRTRSIAELGSPPQTENREEPLEETVG Sbjct: 1 MAMIIIKTVEVVGSGECADCALTNIKPSKAFSGLRVTIDCKSENGNGEFKTRRAGELDVDGKFKASLPEEIVENGKLKEECYALLHSASGTPCPAYDGLESSKLVLKEKSNEKHTFGLAKYISMRRRGRPRTRSIAELGSPPQTENREEPLEETVG 156
BLAST of CMJ_chr8_017060.1 vs. ExPASy TrEMBL
Match: A0A067DTT3|A0A067DTT3_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g041542mg PE=4 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 1.067e-73 Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0 Query: 8 TVEVVGSGECADCALTNIKPSKAFSGLRVTIDCKSENGNGEFKTRRAGELDVDGKFKASLPEEIVENGKLKEECYAILHSASGTPCPAYDGLESSKLVLKEKSNEKHTFGLA 119 TVEVVGSGECADCALTNIKPSKAFSGLRVTIDCKSENGNGEFKTRRAGELDVDGKFKASLPEEIVENGKLKEECYA+LHSASGTPCPAYDGLESSKLVLKEKSNEKHTFGLA Sbjct: 22 TVEVVGSGECADCALTNIKPSKAFSGLRVTIDCKSENGNGEFKTRRAGELDVDGKFKASLPEEIVENGKLKEECYALLHSASGTPCPAYDGLESSKLVLKEKSNEKHTFGLA 133
BLAST of CMJ_chr8_017060.1 vs. ExPASy TrEMBL
Match: A0A2H5QQU1|A0A2H5QQU1_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_253100 PE=4 SV=1) HSP 1 Score: 197.978 bits (502), Expect = 1.922e-61 Identity = 97/114 (85.09%), Postives = 104/114 (91.23%), Query Frame = 0 Query: 7 KTVEVVGSGECADCALTNIKPSKAFSGLRVTIDCKSENGNGEFKTRRAGELDVDGKFKASLPEEIVENGKLKEECYAILHSASGTPCPAYDGLESSKLVLKEKSNEKHTFGLAK 120 KTVEVVGS ECADCAL+NIKPS+AFSGLRVTIDCK ENGNG FKTR GELDV G+FK SLPEEIVE+G+LKE+CYA LHSASGTPCPAY GLESSKLVLK K+NEKHTFGLAK Sbjct: 31 KTVEVVGSAECADCALSNIKPSEAFSGLRVTIDCKQENGNGGFKTRGTGELDVKGEFKVSLPEEIVEDGELKEDCYAQLHSASGTPCPAYGGLESSKLVLKVKTNEKHTFGLAK 144
BLAST of CMJ_chr8_017060.1 vs. ExPASy TrEMBL
Match: V4SDE6|V4SDE6_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029326mg PE=4 SV=1) HSP 1 Score: 197.593 bits (501), Expect = 2.192e-61 Identity = 97/114 (85.09%), Postives = 104/114 (91.23%), Query Frame = 0 Query: 7 KTVEVVGSGECADCALTNIKPSKAFSGLRVTIDCKSENGNGEFKTRRAGELDVDGKFKASLPEEIVENGKLKEECYAILHSASGTPCPAYDGLESSKLVLKEKSNEKHTFGLAK 120 KTVEVVGS ECADCAL+NIKPS+AFSGLRVTIDCK ENGNG FKTR GELDV G+FK SLPEEIVE+G+LKE+CYA LHSASGTPCPAY GLESSKLVLK K+NEKHTFGLAK Sbjct: 31 KTVEVVGSAECADCALSNIKPSEAFSGLRVTIDCKQENGNGGFKTRGTGELDVKGEFKVSLPEEIVEDGELKEDCYAQLHSASGTPCPAYGGLESSKLVLKVKTNEKHTFGLAK 144
BLAST of CMJ_chr8_017060.1 vs. ExPASy TrEMBL
Match: A0A067E4L7|A0A067E4L7_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029405mg PE=4 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 6.905e-61 Identity = 96/114 (84.21%), Postives = 104/114 (91.23%), Query Frame = 0 Query: 7 KTVEVVGSGECADCALTNIKPSKAFSGLRVTIDCKSENGNGEFKTRRAGELDVDGKFKASLPEEIVENGKLKEECYAILHSASGTPCPAYDGLESSKLVLKEKSNEKHTFGLAK 120 KTVEVVGS ECADCA +NIKPS+AFSGLRVTIDCK ENGNG FKTR GELDV+G+FK SLPEEIVE+G+LKE+CYA LHSASGTPCPAY GLESSKLVLK K+NEKHTFGLAK Sbjct: 31 KTVEVVGSAECADCARSNIKPSEAFSGLRVTIDCKQENGNGGFKTRGTGELDVEGEFKVSLPEEIVEDGELKEDCYAQLHSASGTPCPAYGGLESSKLVLKVKTNEKHTFGLAK 144
BLAST of CMJ_chr8_017060.1 vs. ExPASy TrEMBL
Match: A0A067EGG1|A0A067EGG1_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g043343mg PE=4 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 2.257e-53 Identity = 89/118 (75.42%), Postives = 101/118 (85.59%), Query Frame = 0 Query: 7 KTVEVVGSGECADCALTNIKPSKAFSGLRVTIDCKSENGNGEFKTRRAGELDVDGKFKASLPEEIVENGKLKEECYAILHSASGTPCPAYDGLESSKLVLKEKSNEKHTFGLAKYISM 124 K VEVVG+GECADCAL+N K S+AFSGLRVTIDCKS+NG EFKTR GELD +G+FK SLPEEIVE+GKLK+ECYA +HS+S TPCPAYDGLESSK+VLK K N KHTFGLAK + Sbjct: 30 KAVEVVGTGECADCALSNFKTSQAFSGLRVTIDCKSKNG--EFKTRGTGELDEEGQFKVSLPEEIVEDGKLKDECYAQVHSSSATPCPAYDGLESSKIVLKTKINGKHTFGLAKKLKF 145
BLAST of CMJ_chr8_017060.1 vs. ExPASy TrEMBL
Match: V4UC27|V4UC27_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10028101mg PE=4 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 8.254e-52 Identity = 92/118 (77.97%), Postives = 101/118 (85.59%), Query Frame = 0 Query: 7 KTVEVVGSGECADCALTNIKPSKAFSGLRVTIDCKSENGNGEFKTRRAGELDVDGKFKASLPEEIVENGKLKEECYAILHSASGTPCPAYDGLESSKLVLKEKSNEKHTFGLAKYISM 124 K VEVVG+GECADCAL+N K S+AFSGLRVTIDCKS+NG EFKTR GELD +GKFK SLPEEIVE+GKLKEECYA LHS+S TPCPAYDGLESSK+VLK K N KHTFGLAK + Sbjct: 30 KAVEVVGTGECADCALSNFKTSQAFSGLRVTIDCKSKNG--EFKTRGTGELDEEGKFKVSLPEEIVEDGKLKEECYAQLHSSSATPCPAYDGLESSKIVLKTKINGKHTFGLAKKLKF 145
BLAST of CMJ_chr8_017060.1 vs. ExPASy TrEMBL
Match: A0A2H5QQS9|A0A2H5QQS9_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_253120 PE=4 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 3.014e-51 Identity = 91/118 (77.12%), Postives = 100/118 (84.75%), Query Frame = 0 Query: 7 KTVEVVGSGECADCALTNIKPSKAFSGLRVTIDCKSENGNGEFKTRRAGELDVDGKFKASLPEEIVENGKLKEECYAILHSASGTPCPAYDGLESSKLVLKEKSNEKHTFGLAKYISM 124 K VEVVG+GECADCA +N K S+AFSGLRVTIDCKS+NG EFKTR GELD +GKFK SLPEEIVE+GKLKEECYA LHS+S TPCPAYDGLESSK+VLK K N KHTFGLAK + Sbjct: 30 KAVEVVGTGECADCAQSNFKTSQAFSGLRVTIDCKSKNG--EFKTRGTGELDEEGKFKVSLPEEIVEDGKLKEECYAQLHSSSATPCPAYDGLESSKIVLKTKINGKHTFGLAKKLKF 145
BLAST of CMJ_chr8_017060.1 vs. ExPASy TrEMBL
Match: A0A067E813|A0A067E813_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029405mg PE=4 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 4.530e-49 Identity = 85/114 (74.56%), Postives = 91/114 (79.82%), Query Frame = 0 Query: 7 KTVEVVGSGECADCALTNIKPSKAFSGLRVTIDCKSENGNGEFKTRRAGELDVDGKFKASLPEEIVENGKLKEECYAILHSASGTPCPAYDGLESSKLVLKEKSNEKHTFGLAK 120 KTVEVVGS ECADCA +NIKPS+AFSGLRVTIDCK ENGNG FKTR GELDV+G+F KE+CYA LHSASGTPCPAY GLESSKLVLK K+NEKHTFGLAK Sbjct: 31 KTVEVVGSAECADCARSNIKPSEAFSGLRVTIDCKQENGNGGFKTRGTGELDVEGEF--------------KEDCYAQLHSASGTPCPAYGGLESSKLVLKVKTNEKHTFGLAK 130
BLAST of CMJ_chr8_017060.1 vs. ExPASy TrEMBL
Match: A0A4U5QUS0|A0A4U5QUS0_POPAL (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000040130 PE=4 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 5.314e-49 Identity = 85/113 (75.22%), Postives = 96/113 (84.96%), Query Frame = 0 Query: 7 KTVEVVGSGECADCALTNIKPSKAFSGLRVTIDCKSENGNGEFKTRRAGELDVDGKFKASLPEEIVENGKLKEECYAILHSASGTPCPAYDGLESSKLVLKEKSNEKHTFGLA 119 KTVEVVG+GECADCA +NIK AF GLRVTIDCK ENG EFKTR GELD +GKFK SLP E+V++GKLKEECYA LHSAS PCP++DGLESSK+VLK K++EKHTFGLA Sbjct: 30 KTVEVVGTGECADCAESNIKTVHAFKGLRVTIDCKPENG--EFKTRGFGELDEEGKFKVSLPSEVVKDGKLKEECYAQLHSASAAPCPSHDGLESSKIVLKSKTDEKHTFGLA 140
BLAST of CMJ_chr8_017060.1 vs. ExPASy Swiss-Prot
Match: PRP4_ARATH (Proline-rich protein 4 OS=Arabidopsis thaliana OX=3702 GN=PRP4 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 1.075e-30 Identity = 63/117 (53.85%), Postives = 80/117 (68.38%), Query Frame = 0 Query: 5 IIKTVEVVGSGECADCALTNIKPSKAFSGLRVTIDCKSENGNGEFKTRRAGELDVDGKFKASLPEEIV-ENGKLKEECYAILHSASGTPCPAYDGLESSKLVLKEKSNEKHTFGLAK 120 + + VEVVG E + IK AFSGLRVTIDCK G+ F T+ +G +D GKF ++P +IV +NG LKEECYA LHSA+GTPCPA+DGLES+K+V KS +KH GL + Sbjct: 28 LARVVEVVGYAE------SKIKTPHAFSGLRVTIDCKVNKGH--FVTKGSGNIDDKGKFGLNIPHDIVSDNGALKEECYAQLHSAAGTPCPAHDGLESTKIVFLSKSGDKHILGLKQ 136
BLAST of CMJ_chr8_017060.1 vs. ExPASy Swiss-Prot
Match: PRP2_ARATH (Proline-rich protein 2 OS=Arabidopsis thaliana OX=3702 GN=PRP2 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.677e-30 Identity = 58/117 (49.57%), Postives = 77/117 (65.81%), Query Frame = 0 Query: 5 IIKTVEVVGSGECADCALTNIKPSKAFSGLRVTIDCKSENGNGEFKTRRAGELDVDGKFKASLPEEIV-ENGKLKEECYAILHSASGTPCPAYDGLESSKLVLKEKSNEKHTFGLAK 120 ++ VEV+G E + + N AFSGLRVTI+CK+ + G F TR +GE+D GKF ++P +IV ++G LKE CYA L SA G PCPA+DGLE+SK+V KS + H GL K Sbjct: 33 VVGDVEVIGYSEISKIKIPN-----AFSGLRVTIECKAADSKGHFVTRGSGEVDETGKFHLNIPHDIVGDDGTLKEACYAHLQSAFGNPCPAHDGLEASKIVFLSKSGQNHVLGLKK 144
BLAST of CMJ_chr8_017060.1 vs. Araport11
Match: AT4G38770.1 (| proline-rich protein 4 | Chr4:18097009-18098448 REVERSE LENGTH=448 | 201606) HSP 1 Score: 118.242 bits (295), Expect = 1.100e-31 Identity = 63/117 (53.85%), Postives = 80/117 (68.38%), Query Frame = 0 Query: 5 IIKTVEVVGSGECADCALTNIKPSKAFSGLRVTIDCKSENGNGEFKTRRAGELDVDGKFKASLPEEIV-ENGKLKEECYAILHSASGTPCPAYDGLESSKLVLKEKSNEKHTFGLAK 120 + + VEVVG E + IK AFSGLRVTIDCK G+ F T+ +G +D GKF ++P +IV +NG LKEECYA LHSA+GTPCPA+DGLES+K+V KS +KH GL + Sbjct: 28 LARVVEVVGYAE------SKIKTPHAFSGLRVTIDCKVNKGH--FVTKGSGNIDDKGKFGLNIPHDIVSDNGALKEECYAQLHSAAGTPCPAHDGLESTKIVFLSKSGDKHILGLKQ 136
BLAST of CMJ_chr8_017060.1 vs. Araport11
Match: AT2G21140.1 (| proline-rich protein 2 | Chr2:9060868-9062035 REVERSE LENGTH=321 | 201606) HSP 1 Score: 115.546 bits (288), Expect = 1.716e-31 Identity = 58/117 (49.57%), Postives = 77/117 (65.81%), Query Frame = 0 Query: 5 IIKTVEVVGSGECADCALTNIKPSKAFSGLRVTIDCKSENGNGEFKTRRAGELDVDGKFKASLPEEIV-ENGKLKEECYAILHSASGTPCPAYDGLESSKLVLKEKSNEKHTFGLAK 120 ++ VEV+G E + + N AFSGLRVTI+CK+ + G F TR +GE+D GKF ++P +IV ++G LKE CYA L SA G PCPA+DGLE+SK+V KS + H GL K Sbjct: 33 VVGDVEVIGYSEISKIKIPN-----AFSGLRVTIECKAADSKGHFVTRGSGEVDETGKFHLNIPHDIVGDDGTLKEACYAHLQSAFGNPCPAHDGLEASKIVFLSKSGQNHVLGLKK 144 The following BLAST results are available for this feature:
BLAST of CMJ_chr8_017060.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr8_017060.1 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 2 Position : 0 Zoom : x 1
BLAST of CMJ_chr8_017060.1 vs. Araport11
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr8_017060.1_cmj_v1 ID=CMJ_chr8_017060.1_cmj_v1; Name=CMJ_chr8_017060.1; organism=Citrus maxima; type=mRNA; length=498bpback to top protein sequence of CMJ_chr8_017060.1_cmj_v1 >CMJ_chr8_017060.1_cmj_v1 ID=CMJ_chr8_017060.1_cmj_v1; Name=CMJ_chr8_017060.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=166bpback to top mRNA from alignment at chr8:29741507..29743555+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2049bp; location=Sequence derived from: chr8:29741507..29743555+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr8:29741507..29743555+ >CMJ_chr8_017060.1_cmj_v1 ID=CMJ_chr8_017060.1_cmj_v1; Name=CMJ_chr8_017060.1; organism=Citrus maxima; type=CDS; length=498bp; location=Sequence derived from: chr8:29741507..29743555+ (Citrus maximaback to top |