CMJ_chr8_018720.1 | Citrus Genome Database

Transcript Overview


Name	CMJ_chr8_018720.1
Unique Name	CMJ_chr8_018720.1_cmj_v1
Type	mRNA
Organism	Citrus maxima (Pomelo, pummelo)
Sequence length	315

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus maxima Cupi Majiayou v1.0 genome	2023-05-10
InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins	2023-05-12
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11	2023-05-15

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
clecmjL339	Citrus limon cv. Eureka genome v1.0	Citrus limon
clecmjL342	Citrus limon cv. Eureka genome v1.0	Citrus limon
clecmjL386	Citrus limon cv. Eureka genome v1.0	Citrus limon
clecmjL389	Citrus limon cv. Eureka genome v1.0	Citrus limon
clecmjL642	Citrus limon cv. Eureka genome v1.0	Citrus limon
clecmjL678	Citrus limon cv. Eureka genome v1.0	Citrus limon
cmjdvaR293	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
cmjdvaR295	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
cmjdvaR299	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
cmjfhsR496	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
cmjcmjL100	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
cmcmjL065	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmcmjL233	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmjzkR561	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
cmcmjL499	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmcmjL505	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmjcsnR658	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjcsnR666	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjcsnR683	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
cmjminR0943	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cmjminR0983	Citrus inodora CRC3784 genome v1.0	Citrus inodora
ccrcmjL235	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcmjL352	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcmjL579	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcmjL672	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcmjL699	Citrus australasica CRC3672 genome v1	Citrus australasica
cmjcsgR419	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
cmjcsgR439	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
cizcmjL136	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cizcmjL357	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cllcmjL120	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
cmjcmxR567	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cmjcmmR461	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
caacmjL140	Citrus australasica cv. AZM genome v1.0	Citrus australasica
caacmjL616	Citrus australasica cv. AZM genome v1.0	Citrus australasica
chhcmjL346	Citrus hongheensis cv. HH genome v1.0	Citrus hongheensis
chhcmjL401	Citrus hongheensis cv. HH genome v1.0	Citrus hongheensis
clhcmjL164	Clausena lansium cv. HP genome v1.0	Clausena lansium
clhcmjL372	Clausena lansium cv. HP genome v1.0	Clausena lansium
clhcmjL398	Clausena lansium cv. HP genome v1.0	Clausena lansium
aeacmjL230	Aegle marmelos cv. AEG genome v1.0	Aegle marmelos
aeacmjL368	Aegle marmelos cv. AEG genome v1.0	Aegle marmelos
aeacmjL422	Aegle marmelos cv. AEG genome v1.0	Aegle marmelos
cmhcmjL444	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
cmhcmjL450	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
cmjcsjR699	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjcsjR728	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjneiR384	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
cmjneiR407	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
cmjcraR666	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cmjcraR682	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cchcmjL124	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
cchcmjL365	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
cchcmjL369	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
ciucmjL177	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucmjL475	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucmjL550	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciucmjL793	Citrus inodora genome v1.0 (UQ)	Citrus inodora
cgacmjL436	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL562	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL828	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgucmjL046	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucmjL097	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucmjL184	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucmjL430	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucmjL549	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucmjL789	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cmjcrcR451	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
cmjcrcR454	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
cmjcstR431	Citrus sinensis cv. Newhall T2T v2.0 genome	Citrus sinensis
cmjcrmR634	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcrmR658	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cmjcriR663	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cmjcriR684	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cmjcriR685	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cmjcriR687	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Cg8g005000.1	Citrus maxima (C. grandis) genome v1.0	Citrus maxima

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CMJ_chr8_018720	CMJ_chr8_018720_cmj_v1	Citrus maxima	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr8_018720.1.exon4	CMJ_chr8_018720.1.exon4_cmj_v1	Citrus maxima	exon
CMJ_chr8_018720.1.exon3	CMJ_chr8_018720.1.exon3_cmj_v1	Citrus maxima	exon
CMJ_chr8_018720.1.exon2	CMJ_chr8_018720.1.exon2_cmj_v1	Citrus maxima	exon
CMJ_chr8_018720.1.exon1	CMJ_chr8_018720.1.exon1_cmj_v1	Citrus maxima	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr8_018720.1.cds.4	CMJ_chr8_018720.1.cds.4_cmj_v1	Citrus maxima	CDS
CMJ_chr8_018720.1.cds.3	CMJ_chr8_018720.1.cds.3_cmj_v1	Citrus maxima	CDS
CMJ_chr8_018720.1.cds.2	CMJ_chr8_018720.1.cds.2_cmj_v1	Citrus maxima	CDS
CMJ_chr8_018720.1.cds.1	CMJ_chr8_018720.1.cds.1_cmj_v1	Citrus maxima	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr8_018720.1_cmj_v1	CMJ_chr8_018720.1_cmj_v1	Citrus maxima	polypeptide
CMJ_chr8_018720.1_cmj_v1	CMJ_chr8_018720.1_cmj_v1-protein	Citrus maxima	polypeptide

Homology

[Close]

BLAST of CMJ_chr8_018720.1 vs. ExPASy TrEMBL
Match: A0A067DMZ9|A0A067DMZ9_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g038177mg PE=4 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.760e-32
Identity = 68/85 (80.00%), Postives = 75/85 (88.24%), Query Frame = 0

Query:   16 MCAPESSRQASKRKRKESSSSRFESSDAPITKTHLTNEDLNDVTSENPYQSCNEENLTKKKRGPTVCHNVANEDGDAIKKYTLQM 100
            MCAPESSRQASKRKRKES SS+ ES DAPI +THLTNEDLNDVTSEN +QSCNEENLTKKKRGPT+CH+VANEDG   KK  L++
Sbjct:    1 MCAPESSRQASKRKRKESLSSKSESRDAPIIETHLTNEDLNDVTSENSHQSCNEENLTKKKRGPTICHDVANEDG---KKIVLEL 82

The following BLAST results are available for this feature:

BLAST of CMJ_chr8_018720.1 vs. ExPASy TrEMBL
BLAST of CMJ_chr8_018720.1 vs. ExPASy TrEMBL
BLAST of CMJ_chr8_018720.1 vs. ExPASy TrEMBL

BLAST of CMJ_chr8_018720.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL)
Total hits: 1

Position :

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Match Name	E-value	Identity	Description
A0A067DMZ9\|A0A067DMZ9_CITSI	2.760e-32	80.00	Uncharacterized protein OS=Citrus sinensis OX=2711...	[more]

BLAST of CMJ_chr8_018720.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr8_018720.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11)
Total hits: 0

Position :

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x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..78

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:30811373..30812931-
coding sequence from alignment at chr8:30811373..30812931-

mRNA sequence

>CMJ_chr8_018720.1_cmj_v1 ID=CMJ_chr8_018720.1_cmj_v1; Name=CMJ_chr8_018720.1; organism=Citrus maxima; type=mRNA; length=315bp
ATGAATAAACTTTGCCCTGTATTTCAAGAACATTGGGGAAGTACCATGTG
TGCCCCAGAGAGTTCTCGACAAGCTTCCAAAAGAAAAAGGAAGGAAAGTT
CATCAAGTAGGTTTGAGTCTAGTGATGCACCTATTACCAAGACACACTTA
ACTAATGAAGATCTCAATGATGTCACATCCGAAAATCCGTATCAATCTTG
TAATGAAGAGAATTTGACAAAGAAGAAACGGGGCCCTACTGTATGTCATA
ATGTAGCAAATGAAGATGGAGATGCAATCAAAAAGTATACGCTACAGATG
ATGGGAAAAGTCTAG

protein sequence of CMJ_chr8_018720.1_cmj_v1

>CMJ_chr8_018720.1_cmj_v1 ID=CMJ_chr8_018720.1_cmj_v1; Name=CMJ_chr8_018720.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=105bp
MNKLCPVFQEHWGSTMCAPESSRQASKRKRKESSSSRFESSDAPITKTHL
TNEDLNDVTSENPYQSCNEENLTKKKRGPTVCHNVANEDGDAIKKYTLQM
MGKV*

mRNA from alignment at chr8:30811373..30812931-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=1559bp; location=Sequence derived from: chr8:30811373..30812931- (Citrus maxima
ATGAATAAACTGTATTGGTTGGGTATTTTTTAGAGTGATTCTTGAATACT
TTTGCATTCTAGACTTATGTAGCTTTCATTTAAAAGTGATTTCATATCAA
TATCATTTTTGCATATTTTTTTGTGATTTTCTGAAACTGACCCTGTATTT
TAAGAACTTACTGACAGACCTAGAAACAATGAATAAACTATACTGATCGG
TTATATTCCAGAGTAATTTTTGAATATTTTGGCATTCTAGACTTAATTAG
CTTTCATTTAACATTAGTTTCATCTCAATATCATTTTTGTAGAATTTGTT
GTGATATTTTAAATTCAACCCTGTATTTTAAGAACACTGACAAAGAACTT
ACTGACAGACCTGGAAACAATGAATAAACTGTATTGATCGGTTATATTCT
AGAGTAATTCTTGAATATTTTTGCATTCTATACTTAATTAGCTTTCATTT
AAAATTAGTTTCATCTCAATATCATTTTTTTAGAATTTGTTGTGATTTTT
TGAATTCGACCTGTATTTTAAGAACACTGACAAAGAACTTACTGACAGAC
CTGGAAACAATGAATAAATTGTATTGATCGGTTATATTCCAGAGTAATTC
TTGAATATTTTTGCATTCTAGGCTTAATTAGCTTTCATTTAAAATTAGTT
TCATGTCAATATCATGTTTCTAGAATTTGTTGTGATTTTTTGAATTCGAC
CCTATATTTTAAGAACACTGACAAAGAACTTACTGACAGACCTGGAAACA
ATGAATAAACTGTATTGATCAGTTATATTTTAGAGTGATTCATGAATATT
ATTGCATTCTAGACTTAAGTAGCTTTCATTTAAAAGTAGTTTCATGTTAA
TATCGTTTTTGTAGAATATTTTGTGATTTTTTTAAGTTGCCCTGTATTTC
AAGAACATTGGGGAAGTACCATGTGTGCCCCAGAGGTAAATACTTAATAT
TTTTTTTAAGATTACTATATTTATATATGTTAAAAATGAGAAATTATGCC
AATTCATTTTATATATGGTCAATAGAGTTCTCGACAAGCTTCCAAAAGAA
AAAGGAAGGAAAGTTCATCAAGTAGGTTTGAGTCTAGTGATGCACCTATT
ACCAAGACACACTTAACTAATGAAGATCTCAATGATGTCACATCCGAAAA
TCCGTATCAATCTTGTAATGAAGAGAATTTGACAAAGAAGAAACGGGGCC
CTACTGTATGTCATAATGTAGCAAATGAAGATGGTAAGAAGATAGTCTTA
GAATTGAATAATTTGGGGCAACCTATTGGAAAATCATATGTGTTATATTC
ATCGTTTTATGGTAGTTTGGTAAAGGAGGCTGTGTCTATAAATTGTGATG
ATTGGAGATATGTTCCAAAATAGCAAAACATTTTGTTGTTGAGAGCACTC
GAGGTAAATATGTACACATCTATTTTTAGAGTGCAGTTCAAATTATAACA
TGACACTAACATTAGTTATTTTTTATTTGCTTGAAACATTTAGCACAAAT
TTATTTTGGAAGGAGATGCAATCAAAAAGTATACGCTACAGATGATGGGA
AAAGTCTAG

Coding sequence (CDS) from alignment at chr8:30811373..30812931-

>CMJ_chr8_018720.1_cmj_v1 ID=CMJ_chr8_018720.1_cmj_v1; Name=CMJ_chr8_018720.1; organism=Citrus maxima; type=CDS; length=315bp; location=Sequence derived from: chr8:30811373..30812931- (Citrus maxima
ATGAATAAACTTTGCCCTGTATTTCAAGAACATTGGGGAAGTACCATGTG
TGCCCCAGAGAGTTCTCGACAAGCTTCCAAAAGAAAAAGGAAGGAAAGTT
CATCAAGTAGGTTTGAGTCTAGTGATGCACCTATTACCAAGACACACTTA
ACTAATGAAGATCTCAATGATGTCACATCCGAAAATCCGTATCAATCTTG
TAATGAAGAGAATTTGACAAAGAAGAAACGGGGCCCTACTGTATGTCATA
ATGTAGCAAATGAAGATGGAGATGCAATCAAAAAGTATACGCTACAGATG
ATGGGAAAAGTCTAG