Transcript Overview
| Name | CMJ_chr8_018830.1 |
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| Unique Name | CMJ_chr8_018830.1_cmj_v1 |
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| Type | mRNA |
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| Organism | Citrus maxima (Pomelo, pummelo) |
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| Sequence length | 495 |
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Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CMJ_chr8_018830.1.utr5.1 | CMJ_chr8_018830.1.utr5.1_cmj_v1 | Citrus maxima | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CMJ_chr8_018830.1.exon1 | CMJ_chr8_018830.1.exon1_cmj_v1 | Citrus maxima | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CMJ_chr8_018830.1.cds.1 | CMJ_chr8_018830.1.cds.1_cmj_v1 | Citrus maxima | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CMJ_chr8_018830.1.utr3.1 | CMJ_chr8_018830.1.utr3.1_cmj_v1 | Citrus maxima | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CMJ_chr8_018830.1_cmj_v1 | CMJ_chr8_018830.1_cmj_v1 | Citrus maxima | polypeptide |
| CMJ_chr8_018830.1_cmj_v1 | CMJ_chr8_018830.1_cmj_v1-protein | Citrus maxima | polypeptide |
Homology
The following BLAST results are available for this feature:
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr8_018830.1_cmj_v1 ID=CMJ_chr8_018830.1_cmj_v1; Name=CMJ_chr8_018830.1; organism=Citrus maxima; type=mRNA; length=495bp
ATGAACAAGAAGAAATGGCAGAAAACCATGACCAAGACACCCCATCCCTT
CGTGCGACCCCACATGCACGTAACACAAACGTGCAAAATAGCAAGCATGG
TGGCCAAGATGACCAAGAAAGCCGTGGTGAATAAACAAATCAGTCACTCC
CACATCAAAGTGAAAACCGAAGTCAACCACTTGAGGAAGTGGAAGAAAGC
CGTGACCAAAACCCCTCATCGCATACCAAAGTTTGCACCTCCAACCGTGA
ACAAGTTAAACATGGTGAATCACAAGATCCAGCCATCACAGCCCCTGTAC
AAGCTCAAAAACAACTCTCAGCTGTTAACTTTGCAACCACCGCTAATGGC
CGAGATGAAGCTTCTGAACAGCCCCTTGATTACACACGTTTTGGTACACA
AACGGCATGTACCAAAAGTCAGCCAAGACAGCCAGCTTCGGCCCAACCGA
CAAGCAAAAATTCAGAAATTCTCGACAATCCCTCACAGTTTTTGA back to topprotein sequence of CMJ_chr8_018830.1_cmj_v1 >CMJ_chr8_018830.1_cmj_v1 ID=CMJ_chr8_018830.1_cmj_v1; Name=CMJ_chr8_018830.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=165bp
MNKKKWQKTMTKTPHPFVRPHMHVTQTCKIASMVAKMTKKAVVNKQISHS
HIKVKTEVNHLRKWKKAVTKTPHRIPKFAPPTVNKLNMVNHKIQPSQPLY
KLKNNSQLLTLQPPLMAEMKLLNSPLITHVLVHKRHVPKVSQDSQLRPNR
QAKIQKFSTIPHSF* back to topmRNA from alignment at chr8:30915864..30917760+ Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. > ID=; Name=; organism= ; type=; length=1897bp; location=Sequence derived from: chr8:30915864..30917760+ (Citrus maxima
TTGGAGTTTGTTGTATATTGAATTATTTTGGGAGTGTTTTTTTATATATT
TTCAGATTGGGAGTGTTATATTTATAAAGGAGATTCTGTCGAATTTTCAG
CAGAATCCTTATTAATTAGATTATTATCAAGTTCATTTTGATGAGATTAG
ATTGACTCGCACGGAGGATTCGGGGCGGGTCGTTTAACCTTCATTATCTT
TAAACGGCCTTTATGGCCCCTTCGGCTGCCGATGATGGCAACCGGTCATC
ACCGGCCATTTCCCGCTATTCCGAAGAAGAGTTTCTCAGGACCTTAAATC
CACCTAGGAAATCTTTTAAGTAGCCGCCAAAATGCACCATTGAACCACAA
CCTGACCTAAACTGCCATCACAACCACAGCCCAACCCAAGGCGCTCAAAA
AGATTGCTCAACCAACGCAAACCGCCAACAATCCACTTACACATCTACCA
TATACACCTGTAAACCAACCCCATGCTGAACCACCACTAACATCCACTGT
CTCTATCCTATCAAAACTTCAGAAACCTTCGGCGGTCTCTATTACTGTGA
ATGAACAAGAAGAAATGGCAGAAAACCATGACCAAGACACCCCATCCCTT
CGTGCGACCCCACATGCACGTAACACAAACGTGCAAAATAGCAAGCATGG
TGGCCAAGATGACCAAGAAAGCCGTGGTGAATAAACAAATCAGTCACTCC
CACATCAAAGTGAAAACCGAAGTCAACCACTTGAGGAAGTGGAAGAAAGC
CGTGACCAAAACCCCTCATCGCATACCAAAGTTTGCACCTCCAACCGTGA
ACAAGTTAAACATGGTGAATCACAAGATCCAGCCATCACAGCCCCTGTAC
AAGCTCAAAAACAACTCTCAGCTGTTAACTTTGCAACCACCGCTAATGGC
CGAGATGAAGCTTCTGAACAGCCCCTTGATTACACACGTTTTGGTACACA
AACGGCATGTACCAAAAGTCAGCCAAGACAGCCAGCTTCGGCCCAACCGA
CAAGCAAAAATTCAGAAATTCTCGACAATCCCTCACAGTTTTTGACCACA
CACACGCCTAAGAGTGGGCAAAAAATGCTGATTAATCAAAAACTGAACCG
AATCGTTCGGTTCGGTTCGGTTTTTGTGCATTTTTTTACCTCCAAAAAAC
CGAATAAATAATATAATAAAAGTAATAAAACCAGTAGGTTCGGTTTTTAA
AAAAATCGAAAAACCGAACCGAATATCAAATAAACCGAATTTCTAAATTC
TAATAAACAAACCCTAAAATCTAAATCTACAAAACTTCTTCTCTTCTTCA
GCCAAAAACCGTTCGAACTCGTGACCGTGAGTCGTGACCTTCAGGCTTCA
GCCGCAGCACCGTCAGCCGCTGTAACTCATCCCCGCTGCTCGTCGCCGCC
GCTGCCATCTCATCGTCGCCACTGCTCGTCAGTCGTCACCGCTGCGCCTG
CTCGTCCTTCACGAATCTGATTTGCCGCTGCTGCTCGTCGCCGAGTCTCC
GCTGCCGCTACCACCTGCTGCAGCCGCTGTCATCTGCTGCTGCTACCACT
GTCACTTGTCGTGTGAAGATTGGTATTTGTTTTGTGGATTGTGGAAGTTT
ATTAATTCCTTTTTTTTTCAAATGAAAATGATCTGGTTAACATTTTGAAG
ACAAAATGTAATTTTCATGTTCTCTGCATTATCCCATATGGCATTTCATA
TTCAATTGCACTGAAATCGTAGGTAACGAAAATGGTAGTTGAAGCTTAGA
AGTGAGAACAGCCACTCCAAACCCAGCATGCAAAAATCGTCAAATTATAA
GGGATAATTATCATCTGGATCTTTTGAGTTTTCATGTTTTATTGAGGGGT
ATCATTTGACAGATTTAATTACTCGATTCACTTTAGTTTTGGTTATT back to topCoding sequence (CDS) from alignment at chr8:30915864..30917760+ >CMJ_chr8_018830.1_cmj_v1 ID=CMJ_chr8_018830.1_cmj_v1; Name=CMJ_chr8_018830.1; organism=Citrus maxima; type=CDS; length=495bp; location=Sequence derived from: chr8:30915864..30917760+ (Citrus maxima
ATGAACAAGAAGAAATGGCAGAAAACCATGACCAAGACACCCCATCCCTT
CGTGCGACCCCACATGCACGTAACACAAACGTGCAAAATAGCAAGCATGG
TGGCCAAGATGACCAAGAAAGCCGTGGTGAATAAACAAATCAGTCACTCC
CACATCAAAGTGAAAACCGAAGTCAACCACTTGAGGAAGTGGAAGAAAGC
CGTGACCAAAACCCCTCATCGCATACCAAAGTTTGCACCTCCAACCGTGA
ACAAGTTAAACATGGTGAATCACAAGATCCAGCCATCACAGCCCCTGTAC
AAGCTCAAAAACAACTCTCAGCTGTTAACTTTGCAACCACCGCTAATGGC
CGAGATGAAGCTTCTGAACAGCCCCTTGATTACACACGTTTTGGTACACA
AACGGCATGTACCAAAAGTCAGCCAAGACAGCCAGCTTCGGCCCAACCGA
CAAGCAAAAATTCAGAAATTCTCGACAATCCCTCACAGTTTTTGA back to top
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