CMJ_chr8_019850.1 | Citrus Genome Database

Transcript Overview


Name	CMJ_chr8_019850.1
Unique Name	CMJ_chr8_019850.1_cmj_v1
Type	mRNA
Organism	Citrus maxima (Pomelo, pummelo)
Sequence length	201

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus maxima Cupi Majiayou v1.0 genome	2023-05-10
InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins	2023-05-12
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot	2023-05-15
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11	2023-05-15

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cllcmjL120	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
cmjcmxR567	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cmjcmmR461	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
clhcmjL163	Clausena lansium cv. HP genome v1.0	Clausena lansium
clhcmjL398	Clausena lansium cv. HP genome v1.0	Clausena lansium
cmjmpjR465	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
aeacmjL422	Aegle marmelos cv. AEG genome v1.0	Aegle marmelos
cmhcmjL444	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
cmjcsjR699	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjcsjR728	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
cmjneiR407	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
cgacmjL436	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgacmjL828	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgucmjL430	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgucmjL789	Citrus glauca genome v1.0 (UQ)	Citrus glauca

Orthologs


Gene/Transcript	Assembly	Species
drCitSine.Jinhong.1.0.HB8g26100.1	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
hap1-g22788.t1	Citrus glauca genome v1.0 (UQ)	Citrus glauca
LW144910.1	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
Csi08G023550.1	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
HP184440.1	Clausena lansium cv. HP genome v1.0	Clausena lansium
hap2-g22418.t1	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
drCitSine.Jinhong.1.0.HA8g28200.1	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
JLX042690.1	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
Aeg120550.1	Aegle marmelos cv. AEG genome v1.0	Aegle marmelos
Cms034200.1	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Cmt031810.1	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
XGF184480.1	Citrus maxima cv. XGF genome v1.0	Citrus maxima

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CMJ_chr8_019850	CMJ_chr8_019850_cmj_v1	Citrus maxima	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr8_019850.1.exon1	CMJ_chr8_019850.1.exon1_cmj_v1	Citrus maxima	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr8_019850.1.cds.1	CMJ_chr8_019850.1.cds.1_cmj_v1	Citrus maxima	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CMJ_chr8_019850.1_cmj_v1	CMJ_chr8_019850.1_cmj_v1	Citrus maxima	polypeptide
CMJ_chr8_019850.1_cmj_v1	CMJ_chr8_019850.1_cmj_v1-protein	Citrus maxima	polypeptide

Homology

The following BLAST results are available for this feature:

BLAST of CMJ_chr8_019850.1 vs.
BLAST of CMJ_chr8_019850.1 vs.
BLAST of CMJ_chr8_019850.1 vs.

BLAST of CMJ_chr8_019850.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr8_019850.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of CMJ_chr8_019850.1 vs.
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:31721156..31721356-
coding sequence from alignment at chr8:31721156..31721356-

mRNA sequence

>CMJ_chr8_019850.1_cmj_v1 ID=CMJ_chr8_019850.1_cmj_v1; Name=CMJ_chr8_019850.1; organism=Citrus maxima; type=mRNA; length=201bp
ATGAGTCCTCTTTATTCTCTTACATTGGCTATAAATGTCATTTCCATCTT
CATCTTCTTCCTTTTGCTCTCTTACTCCATGCGTGTTGATGGTTCAAGGA
TGCTGCATGTGCATGATCATCAATCTAATTCCCTTCCATCAATATTAAAG
GGTTTAGGCATGGCTTACTCTGGGCCAAGCCACGATGGTCGCGGGCACTG
A

protein sequence of CMJ_chr8_019850.1_cmj_v1

>CMJ_chr8_019850.1_cmj_v1 ID=CMJ_chr8_019850.1_cmj_v1; Name=CMJ_chr8_019850.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=67bp
MSPLYSLTLAINVISIFIFFLLLSYSMRVDGSRMLHVHDHQSNSLPSILK
GLGMAYSGPSHDGRGH*

mRNA from alignment at chr8:31721156..31721356-

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=201bp; location=Sequence derived from: chr8:31721156..31721356- (Citrus maxima
ATGAGTCCTCTTTATTCTCTTACATTGGCTATAAATGTCATTTCCATCTT
CATCTTCTTCCTTTTGCTCTCTTACTCCATGCGTGTTGATGGTTCAAGGA
TGCTGCATGTGCATGATCATCAATCTAATTCCCTTCCATCAATATTAAAG
GGTTTAGGCATGGCTTACTCTGGGCCAAGCCACGATGGTCGCGGGCACTG
A

Coding sequence (CDS) from alignment at chr8:31721156..31721356-

>CMJ_chr8_019850.1_cmj_v1 ID=CMJ_chr8_019850.1_cmj_v1; Name=CMJ_chr8_019850.1; organism=Citrus maxima; type=CDS; length=201bp; location=Sequence derived from: chr8:31721156..31721356- (Citrus maxima
ATGAGTCCTCTTTATTCTCTTACATTGGCTATAAATGTCATTTCCATCTT
CATCTTCTTCCTTTTGCTCTCTTACTCCATGCGTGTTGATGGTTCAAGGA
TGCTGCATGTGCATGATCATCAATCTAATTCCCTTCCATCAATATTAAAG
GGTTTAGGCATGGCTTACTCTGGGCCAAGCCACGATGGTCGCGGGCACTG
A