CMJ_chr8_019940.1
|
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CMJ_chr8_019940.1 vs. ExPASy TrEMBL
Match: A0A2H5P8F7|A0A2H5P8F7_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_113300 PE=4 SV=1) HSP 1 Score: 218.779 bits (556), Expect = 4.084e-64 Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0 Query: 1 MAEKKRKAAESADSTKHKMKHSKKPKRQSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDIDSDEARDFYEYEEPLPQEESRKNRRFDLVENYEYELPEKFE 110
MAEKKRKAAESADSTKHKMKHSKKPKRQSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDIDSDEARDFYEYEEPLPQEESRKNRRFD VENYEYELPEKFE
Sbjct: 1 MAEKKRKAAESADSTKHKMKHSKKPKRQSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDIDSDEARDFYEYEEPLPQEESRKNRRFDPVENYEYELPEKFE 110
BLAST of CMJ_chr8_019940.1 vs. ExPASy TrEMBL
Match: A0A067E280|A0A067E280_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g002540mg PE=4 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 1.991e-54 Identity = 106/110 (96.36%), Postives = 107/110 (97.27%), Query Frame = 0 Query: 1 MAEKKRKAAESADSTKHKMKHSKKPKRQSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDIDSDEARDFYEYEEPLPQEESRKNRRFDLVENYEYELPEKFE 110
M E+KRKAAESADSTKHKMKHSKKPKRQSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDI SDEARDFYEYEEPLPQEESRKNRRFD VENYEYELPEKFE
Sbjct: 1 MVEQKRKAAESADSTKHKMKHSKKPKRQSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEYELPEKFE 110
BLAST of CMJ_chr8_019940.1 vs. ExPASy TrEMBL
Match: A0A067DYA6|A0A067DYA6_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g002540mg PE=4 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 9.859e-54 Identity = 106/110 (96.36%), Postives = 107/110 (97.27%), Query Frame = 0 Query: 1 MAEKKRKAAESADSTKHKMKHSKKPKRQSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDIDSDEARDFYEYEEPLPQEESRKNRRFDLVENYEYELPEKFE 110
M E+KRKAAESADSTKHKMKHSKKPKRQSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDI SDEARDFYEYEEPLPQEESRKNRRFD VENYEYELPEKFE
Sbjct: 1 MVEQKRKAAESADSTKHKMKHSKKPKRQSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEYELPEKFE 110
BLAST of CMJ_chr8_019940.1 vs. ExPASy TrEMBL
Match: A0A067DYN4|A0A067DYN4_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g002540mg PE=4 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 9.902e-54 Identity = 106/110 (96.36%), Postives = 107/110 (97.27%), Query Frame = 0 Query: 1 MAEKKRKAAESADSTKHKMKHSKKPKRQSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDIDSDEARDFYEYEEPLPQEESRKNRRFDLVENYEYELPEKFE 110
M E+KRKAAESADSTKHKMKHSKKPKRQSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDI SDEARDFYEYEEPLPQEESRKNRRFD VENYEYELPEKFE
Sbjct: 1 MVEQKRKAAESADSTKHKMKHSKKPKRQSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEYELPEKFE 110
BLAST of CMJ_chr8_019940.1 vs. ExPASy TrEMBL
Match: V4UA81|V4UA81_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027776mg PE=4 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 1.147e-53 Identity = 105/110 (95.45%), Postives = 106/110 (96.36%), Query Frame = 0 Query: 1 MAEKKRKAAESADSTKHKMKHSKKPKRQSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDIDSDEARDFYEYEEPLPQEESRKNRRFDLVENYEYELPEKFE 110
M E+KRKAAESADSTKHKMKHSKKPK QSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDI SDEARDFYEYEEPLPQEESRKNRRFD VENYEYELPEKFE
Sbjct: 1 MVEQKRKAAESADSTKHKMKHSKKPKMQSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEYELPEKFE 110
BLAST of CMJ_chr8_019940.1 vs. ExPASy TrEMBL
Match: V4RP61|V4RP61_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027776mg PE=4 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 7.279e-53 Identity = 105/110 (95.45%), Postives = 106/110 (96.36%), Query Frame = 0 Query: 1 MAEKKRKAAESADSTKHKMKHSKKPKRQSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDIDSDEARDFYEYEEPLPQEESRKNRRFDLVENYEYELPEKFE 110
M E+KRKAAESADSTKHKMKHSKKPK QSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDI SDEARDFYEYEEPLPQEESRKNRRFD VENYEYELPEKFE
Sbjct: 1 MVEQKRKAAESADSTKHKMKHSKKPKMQSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEYELPEKFE 110
BLAST of CMJ_chr8_019940.1 vs. ExPASy TrEMBL
Match: A0A5C7I3T0|A0A5C7I3T0_9ROSI (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_011187 PE=4 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 3.862e-27 Identity = 67/107 (62.62%), Postives = 82/107 (76.64%), Query Frame = 0 Query: 1 MAEKKRKAAESADSTKHKMKHSKKPKRQSKKLDGGG---EKKKRK-GPRLPNSLRKEI--DRLNTNSLNGSDEDIDSDEARDFYEYEEPLPQEESRKNRRFDLVENY 101
MAEKKRKAA DSTK + K + KP +++K L GGG +K++RK GPRLP LRK + + +T+SLN SDE+I SDEA DFYEYEEPLPQEES KNRRFD+V+NY
Sbjct: 15 MAEKKRKAA---DSTKDRSKSNNKPNKRNKSLGGGGSSDDKRRRKTGPRLPAPLRKVLGGTKRSTDSLNDSDENISSDEANDFYEYEEPLPQEESGKNRRFDVVKNY 118
BLAST of CMJ_chr8_019940.1 vs. ExPASy TrEMBL
Match: A0A7N2N4W8|A0A7N2N4W8_QUELO (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 4.703e-24 Identity = 55/75 (73.33%), Postives = 60/75 (80.00%), Query Frame = 0 Query: 41 RKGPRLPNSLRKEIDRLN-TNSLNGSDEDIDSDEAR----DFYEYEEPLPQEESRKNRRFDLVENYEYELPEKFE 110
RKGPRLPNSLRKEI+RLN + LN DEDI+SDE D YEYEE +PQEESRKNRRFD VEN+EYELPE FE
Sbjct: 41 RKGPRLPNSLRKEIERLNPSTQLNSEDEDINSDEGEFPTDDIYEYEEKIPQEESRKNRRFDPVENFEYELPEDFE 115
BLAST of CMJ_chr8_019940.1 vs. ExPASy TrEMBL
Match: A0A2N9E4P4|A0A2N9E4P4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1808 PE=4 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 2.072e-23 Identity = 64/117 (54.70%), Postives = 79/117 (67.52%), Query Frame = 0 Query: 1 MAEKKRKA---AESADSTKHKMKHSKKPKRQSKKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNS-LNGSDEDIDSDE----ARDFYEYEEPLPQEESRKNRRFDLVENYEYELPEKF 109
M E KRKA ++ K K SK P + K+ E++KR GPRLPNSLRKE++RLN ++ LN DE+IDSDE D YEY+E +PQEESRKNRRFD V+N+EYELPE F
Sbjct: 1 MVETKRKARDESKDKKIKKQKSSDSKAPAKNMKRTGKKSEERKRTGPRLPNSLRKELERLNPSTKLNSDDEEIDSDEGEFNTNDLYEYQEEIPQEESRKNRRFDPVDNFEYELPEDF 117
BLAST of CMJ_chr8_019940.1 vs. ExPASy TrEMBL
Match: A0A6A1UPU1|A0A6A1UPU1_9ROSI (U3 small nucleolar RNA-associated protein 14 OS=Morella rubra OX=262757 GN=CJ030_MR8G019135 PE=4 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.918e-21 Identity = 53/80 (66.25%), Postives = 61/80 (76.25%), Query Frame = 0 Query: 36 GEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDED--IDSDE----ARDFYEYEEPLPQEESRKNRRFDLVENYEYELPEKF 109
E+ KR GPRLPNSLRKE+DRLN NS SDE+ I+SDE A D YEY E +PQEES+KNRRFD VEN+EYELP+ F
Sbjct: 41 SERMKRTGPRLPNSLRKELDRLNPNSSLNSDEEEEINSDEGELYADDVYEYHEGVPQEESKKNRRFDPVENFEYELPQNF 120 The following BLAST results are available for this feature:
BLAST of CMJ_chr8_019940.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CMJ_chr8_019940.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CMJ_chr8_019940.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >CMJ_chr8_019940.1_cmj_v1 ID=CMJ_chr8_019940.1_cmj_v1; Name=CMJ_chr8_019940.1; organism=Citrus maxima; type=mRNA; length=348bpback to top protein sequence of CMJ_chr8_019940.1_cmj_v1 >CMJ_chr8_019940.1_cmj_v1 ID=CMJ_chr8_019940.1_cmj_v1; Name=CMJ_chr8_019940.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=116bpback to top mRNA from alignment at chr8:31784753..31785343- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=591bp; location=Sequence derived from: chr8:31784753..31785343- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr8:31784753..31785343- >CMJ_chr8_019940.1_cmj_v1 ID=CMJ_chr8_019940.1_cmj_v1; Name=CMJ_chr8_019940.1; organism=Citrus maxima; type=CDS; length=348bp; location=Sequence derived from: chr8:31784753..31785343- (Citrus maximaback to top |