Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CMJ_chr9_017440.1.exon2 | CMJ_chr9_017440.1.exon2_cmj_v1 | Citrus maxima | exon |
| CMJ_chr9_017440.1.exon1 | CMJ_chr9_017440.1.exon1_cmj_v1 | Citrus maxima | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CMJ_chr9_017440.1.cds.2 | CMJ_chr9_017440.1.cds.2_cmj_v1 | Citrus maxima | CDS |
| CMJ_chr9_017440.1.cds.1 | CMJ_chr9_017440.1.cds.1_cmj_v1 | Citrus maxima | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CMJ_chr9_017440.1_cmj_v1 | CMJ_chr9_017440.1_cmj_v1 | Citrus maxima | polypeptide |
| CMJ_chr9_017440.1_cmj_v1 | CMJ_chr9_017440.1_cmj_v1-protein | Citrus maxima | polypeptide |
Homology
BLAST of CMJ_chr9_017440.1 vs. ExPASy TrEMBL
Match:
V4U200|V4U200_CITCL (Uncharacterized protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10006878mg PE=4 SV=1)
HSP 1 Score: 131.724 bits (330), Expect = 2.666e-36
Identity = 91/112 (81.25%), Postives = 91/112 (81.25%), Query Frame = 0
Query: 5 AMELKKEAEATKNCAQRIREAEEVKVAETRALYQIKLLSER---------EATQEEIEDIKSATEEAL---------KRAVEGELQRWREQEQKKAAEAAADVRVINAQLLY 98
AMELKKEAEATKNCAQRIREA EVKVA TRAL QIKLLSER EATQEEIEDIKSATEEAL KRAVEGELQRWREQEQKKAAEAAADVRVINAQLLY
Sbjct: 109 AMELKKEAEATKNCAQRIREAAEVKVAGTRALDQIKLLSERGKMKVCCHVEATQEEIEDIKSATEEALKRAEMTEATKRAVEGELQRWREQEQKKAAEAAADVRVINAQLLY 220
BLAST of CMJ_chr9_017440.1 vs. ExPASy TrEMBL
Match:
A0A067G794|A0A067G794_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g045148mg PE=4 SV=1)
HSP 1 Score: 72.4034 bits (176), Expect = 2.439e-13
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 0
Query: 5 AMELKKEAEATKNCAQRIREAEEVKVAETRALYQIKLLSER 45
AMELKKEAEATKNCAQRIREA EVKVA TRAL QIKLLSER
Sbjct: 157 AMELKKEAEATKNCAQRIREAAEVKVAGTRALDQIKLLSER 197
BLAST of CMJ_chr9_017440.1 vs. ExPASy TrEMBL
Match:
A0A2H5PP19|A0A2H5PP19_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_154210 PE=4 SV=1)
HSP 1 Score: 72.4034 bits (176), Expect = 2.465e-13
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 0
Query: 5 AMELKKEAEATKNCAQRIREAEEVKVAETRALYQIKLLSER 45
AMELKKEAEATKNCAQRIREA EVKVA TRAL QIKLLSER
Sbjct: 157 AMELKKEAEATKNCAQRIREAAEVKVAGTRALDQIKLLSER 197
BLAST of CMJ_chr9_017440.1 vs. ExPASy TrEMBL
Match:
A0A1Q3AVB1|A0A1Q3AVB1_CEPFO (DUF827 domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03199 PE=3 SV=1)
HSP 1 Score: 64.3142 bits (155), Expect = 9.645e-10
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 0
Query: 26 EEVKVAETRALYQIKLLSEREATQEEIEDIKSATEEALKRA---------VEGELQRWREQEQKKAAEAAADV 89
E VK +E AL ++ EATQ+EIED+K+AT EALKRA VEGEL+RWRE+EQKKAAEAA+ +
Sbjct: 512 EAVKASENEALKRL------EATQKEIEDMKTATGEALKRADMAEAAKRAVEGELRRWREREQKKAAEAASRI 578
BLAST of CMJ_chr9_017440.1 vs. ExPASy TrEMBL
Match:
A0A1Q3BLD9|A0A1Q3BLD9_CEPFO (DUF827 domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_12340 PE=3 SV=1)
HSP 1 Score: 64.3142 bits (155), Expect = 9.648e-10
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 0
Query: 26 EEVKVAETRALYQIKLLSEREATQEEIEDIKSATEEALKRA---------VEGELQRWREQEQKKAAEAAADV 89
E VK +E AL ++ EATQ+EIED+K+AT EALKRA VEGEL+RWRE+EQKKAAEAA+ +
Sbjct: 515 EAVKASENEALKRL------EATQKEIEDMKTATGEALKRADMAEAAKRAVEGELRRWREREQKKAAEAASRI 581
The following BLAST results are available for this feature:
BLAST of CMJ_chr9_017440.1 vs. ExPASy TrEMBL
Analysis Date: 2023-05-15 (
Blastp of Citrus maxima Cupi Majiayou v1.0 proteins vs UniProt TrEMBL)
Total hits: 5
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>CMJ_chr9_017440.1_cmj_v1 ID=CMJ_chr9_017440.1_cmj_v1; Name=CMJ_chr9_017440.1; organism=Citrus maxima; type=mRNA; length=297bp
ATGAAGAATAAAGCTATGGAGTTGAAGAAGGAAGCTGAAGCCACCAAAAA
TTGTGCTCAAAGAATCAGAGAAGCTGAAGAAGTGAAAGTAGCAGAGACAA
GGGCCCTTTATCAGATTAAGTTGTTGTCTGAAAGAGAGGCAACTCAGGAG
GAGATTGAGGATATAAAGTCTGCAACTGAAGAGGCTCTAAAGAGGGCAGT
AGAGGGAGAACTCCAAAGGTGGCGTGAACAAGAGCAAAAGAAAGCAGCTG
AAGCTGCAGCCGATGTCAGAGTCATTAACGCTCAACTATTGTATTAA
back to topprotein sequence of CMJ_chr9_017440.1_cmj_v1
>CMJ_chr9_017440.1_cmj_v1 ID=CMJ_chr9_017440.1_cmj_v1; Name=CMJ_chr9_017440.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=99bp
MKNKAMELKKEAEATKNCAQRIREAEEVKVAETRALYQIKLLSEREATQE
EIEDIKSATEEALKRAVEGELQRWREQEQKKAAEAAADVRVINAQLLY*
back to topmRNA from alignment at chr9:26618567..26618996-
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=430bp; location=Sequence derived from: chr9:26618567..26618996- (Citrus maxima
ATGAAGAATAAAGCTATGGAGTTGAAGAAGGAAGCTGAAGCCACCAAAAA
TTGTGCTCAAAGAATCAGAGAAGCTGAAGAAGTGAAAGTAGCAGAGACAA
GGGCCCTTTATCAGATTAAGTTGTTGTCTGAAAGAGGTAGTGCTGCATGA
GCATCTACTTCCTAATCAGGTGCCAATCTGACCCTCTCAAGAGAAGAATT
CGAGTCTTTGAGCCGTAAAGTTGAGGAGTCCCGACATATTCGCAGAAATG
AAAGTTTGCTGCCATGTAGAGGCAACTCAGGAGGAGATTGAGGATATAAA
GTCTGCAACTGAAGAGGCTCTAAAGAGGGCAGTAGAGGGAGAACTCCAAA
GGTGGCGTGAACAAGAGCAAAAGAAAGCAGCTGAAGCTGCAGCCGATGTC
AGAGTCATTAACGCTCAACTATTGTATTAA
back to topCoding sequence (CDS) from alignment at chr9:26618567..26618996-
>CMJ_chr9_017440.1_cmj_v1 ID=CMJ_chr9_017440.1_cmj_v1; Name=CMJ_chr9_017440.1; organism=Citrus maxima; type=CDS; length=297bp; location=Sequence derived from: chr9:26618567..26618996- (Citrus maxima
ATGAAGAATAAAGCTATGGAGTTGAAGAAGGAAGCTGAAGCCACCAAAAA
TTGTGCTCAAAGAATCAGAGAAGCTGAAGAAGTGAAAGTAGCAGAGACAA
GGGCCCTTTATCAGATTAAGTTGTTGTCTGAAAGAGAGGCAACTCAGGAG
GAGATTGAGGATATAAAGTCTGCAACTGAAGAGGCTCTAAAGAGGGCAGT
AGAGGGAGAACTCCAAAGGTGGCGTGAACAAGAGCAAAAGAAAGCAGCTG
AAGCTGCAGCCGATGTCAGAGTCATTAACGCTCAACTATTGTATTAA
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