Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CMJ_chr9_017840.1.exon1 | CMJ_chr9_017840.1.exon1_cmj_v1 | Citrus maxima | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CMJ_chr9_017840.1.cds.1 | CMJ_chr9_017840.1.cds.1_cmj_v1 | Citrus maxima | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CMJ_chr9_017840.1_cmj_v1 | CMJ_chr9_017840.1_cmj_v1 | Citrus maxima | polypeptide |
| CMJ_chr9_017840.1_cmj_v1 | CMJ_chr9_017840.1_cmj_v1-protein | Citrus maxima | polypeptide |
Homology
BLAST of CMJ_chr9_017840.1 vs. ExPASy TrEMBL
Match:
A0A2H5PNY2|A0A2H5PNY2_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_153810 PE=4 SV=1)
HSP 1 Score: 243.817 bits (621), Expect = 1.619e-79
Identity = 127/130 (97.69%), Postives = 130/130 (100.00%), Query Frame = 0
Query: 44 MNLMSLENGKKQTHLSGYKFLAKEETAGPAEFPGKTPQEFPSETPNYEPDPIPTEIPKIPEIEIDPTIPPEITVVPDPKIDIPLPPNNPSPPQPDTQPPDPSPDILPPPSTPPNIEPSPIVPPDIQRPGG 173
MNLMSLENGKKQTHLSGYKFLAKEETAGPAEFPG+TPQEFPSETPNYEPDPIPTEIPKIPEIEIDPTIPPEITV+PDP+IDIPLPPNNPSPPQPDTQPPDPSPDILPPPSTPPNIEPSPIVPPDIQRPGG
Sbjct: 1 MNLMSLENGKKQTHLSGYKFLAKEETAGPAEFPGETPQEFPSETPNYEPDPIPTEIPKIPEIEIDPTIPPEITVIPDPQIDIPLPPNNPSPPQPDTQPPDPSPDILPPPSTPPNIEPSPIVPPDIQRPGG 130
BLAST of CMJ_chr9_017840.1 vs. ExPASy TrEMBL
Match:
A0A067ESQ6|A0A067ESQ6_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g046184mg PE=4 SV=1)
HSP 1 Score: 131.339 bits (329), Expect = 2.526e-35
Identity = 95/116 (81.90%), Postives = 101/116 (87.07%), Query Frame = 0
Query: 58 LSGYKFLAKEETAGPAEFPGKTPQEFPSETPNYEPDPIPTEIPKIPEIEIDPTIPPEITVVPDPKIDIPLPPNNPSPPQPDTQPPDPSPDILPPPSTPPNIEPSPIVPPDIQRPGG 173
+ FL +++ F KTPQEFPSETPNYEPDPIPTEIPKIPEIEIDPTIPPEITV+PDP+IDIPLPPNNPSPPQPDTQPPDPSPDIL PPSTPPNIE SPIVPPDIQRPGG
Sbjct: 6 MQDTSFLPRKKRLARQSFQAKTPQEFPSETPNYEPDPIPTEIPKIPEIEIDPTIPPEITVIPDPQIDIPLPPNNPSPPQPDTQPPDPSPDILSPPSTPPNIESSPIVPPDIQRPGG 121
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima Cupi Majiayou v1.0 proteins
Date Performed: 2023-05-12
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 122..166 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 68..94 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 118..166 |
Sequences
The
following sequences are available for this feature:
mRNA sequence
>CMJ_chr9_017840.1_cmj_v1 ID=CMJ_chr9_017840.1_cmj_v1; Name=CMJ_chr9_017840.1; organism=Citrus maxima; type=mRNA; length=633bp
ATGTCCACGATTTCATCAAATCTCATGATCGGAAAAGCAATTCCATTGCG
TCCGATAAAGAAAACCCTAACCAGACCTCCATTGATCATTCTTTCCTTTT
CCTCAGCTGCCACATCCCCACATAAAAAAATGAACCTGATGAGCCTGGAA
AACGGGAAAAAACAAACACATCTTTCAGGATACAAGTTTCTTGCCAAGGA
AGAAACGGCTGGCCCGGCAGAGTTTCCAGGCAAAACTCCACAGGAATTTC
CGTCTGAGACTCCAAACTATGAACCTGATCCTATTCCAACAGAAATTCCA
AAGATTCCTGAGATAGAAATAGACCCCACTATTCCTCCCGAAATCACTGT
TGTCCCTGATCCAAAAATCGATATCCCGCTTCCGCCTAACAATCCTTCGC
CACCACAGCCTGATACACAGCCACCTGACCCGTCTCCGGATATCTTGCCG
CCGCCTTCTACTCCTCCAAATATTGAGCCGTCACCGATTGTGCCACCGGA
TATTCAGCGACCTGGTGGCCTCCTTTTGCTCCTGTTGTTTCACTGGACTC
GGCAGTATTGTAGTAGGCTATTAGCTAATAACGCATTTTTTTACCTTTTG
CAGTTTCTAATTACATTAACGTTAGGATCTTGA
back to topprotein sequence of CMJ_chr9_017840.1_cmj_v1
>CMJ_chr9_017840.1_cmj_v1 ID=CMJ_chr9_017840.1_cmj_v1; Name=CMJ_chr9_017840.1_cmj_v1; organism=Citrus maxima; type=polypeptide; length=211bp
MSTISSNLMIGKAIPLRPIKKTLTRPPLIILSFSSAATSPHKKMNLMSLE
NGKKQTHLSGYKFLAKEETAGPAEFPGKTPQEFPSETPNYEPDPIPTEIP
KIPEIEIDPTIPPEITVVPDPKIDIPLPPNNPSPPQPDTQPPDPSPDILP
PPSTPPNIEPSPIVPPDIQRPGGLLLLLLFHWTRQYCSRLLANNAFFYLL
QFLITLTLGS*
back to topmRNA from alignment at chr9:26958347..26958979-
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=633bp; location=Sequence derived from: chr9:26958347..26958979- (Citrus maxima
ATGTCCACGATTTCATCAAATCTCATGATCGGAAAAGCAATTCCATTGCG
TCCGATAAAGAAAACCCTAACCAGACCTCCATTGATCATTCTTTCCTTTT
CCTCAGCTGCCACATCCCCACATAAAAAAATGAACCTGATGAGCCTGGAA
AACGGGAAAAAACAAACACATCTTTCAGGATACAAGTTTCTTGCCAAGGA
AGAAACGGCTGGCCCGGCAGAGTTTCCAGGCAAAACTCCACAGGAATTTC
CGTCTGAGACTCCAAACTATGAACCTGATCCTATTCCAACAGAAATTCCA
AAGATTCCTGAGATAGAAATAGACCCCACTATTCCTCCCGAAATCACTGT
TGTCCCTGATCCAAAAATCGATATCCCGCTTCCGCCTAACAATCCTTCGC
CACCACAGCCTGATACACAGCCACCTGACCCGTCTCCGGATATCTTGCCG
CCGCCTTCTACTCCTCCAAATATTGAGCCGTCACCGATTGTGCCACCGGA
TATTCAGCGACCTGGTGGCCTCCTTTTGCTCCTGTTGTTTCACTGGACTC
GGCAGTATTGTAGTAGGCTATTAGCTAATAACGCATTTTTTTACCTTTTG
CAGTTTCTAATTACATTAACGTTAGGATCTTGA
back to topCoding sequence (CDS) from alignment at chr9:26958347..26958979-
>CMJ_chr9_017840.1_cmj_v1 ID=CMJ_chr9_017840.1_cmj_v1; Name=CMJ_chr9_017840.1; organism=Citrus maxima; type=CDS; length=633bp; location=Sequence derived from: chr9:26958347..26958979- (Citrus maxima
ATGTCCACGATTTCATCAAATCTCATGATCGGAAAAGCAATTCCATTGCG
TCCGATAAAGAAAACCCTAACCAGACCTCCATTGATCATTCTTTCCTTTT
CCTCAGCTGCCACATCCCCACATAAAAAAATGAACCTGATGAGCCTGGAA
AACGGGAAAAAACAAACACATCTTTCAGGATACAAGTTTCTTGCCAAGGA
AGAAACGGCTGGCCCGGCAGAGTTTCCAGGCAAAACTCCACAGGAATTTC
CGTCTGAGACTCCAAACTATGAACCTGATCCTATTCCAACAGAAATTCCA
AAGATTCCTGAGATAGAAATAGACCCCACTATTCCTCCCGAAATCACTGT
TGTCCCTGATCCAAAAATCGATATCCCGCTTCCGCCTAACAATCCTTCGC
CACCACAGCCTGATACACAGCCACCTGACCCGTCTCCGGATATCTTGCCG
CCGCCTTCTACTCCTCCAAATATTGAGCCGTCACCGATTGTGCCACCGGA
TATTCAGCGACCTGGTGGCCTCCTTTTGCTCCTGTTGTTTCACTGGACTC
GGCAGTATTGTAGTAGGCTATTAGCTAATAACGCATTTTTTTACCTTTTG
CAGTTTCTAATTACATTAACGTTAGGATCTTGA
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