Chh248540.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Chh248540.1 vs. ExPASy TrEMBL
Match: A0A2H5Q1P4|A0A2H5Q1P4_CITUN (Copper ion binding protein OS=Citrus unshiu OX=55188 GN=CUMW_187530 PE=4 SV=1) HSP 1 Score: 236.498 bits (602), Expect = 1.706e-78 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 Query: 1 MTTIMASRIAVRNFSRRFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETPAASSGSGAEAKPTSAAGASTEKVSTDQYRNYAVIAGIITGVSALGWYLKSSRKKEQVQD 118
MTTIMASRIAVRNFSRRFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETPAASSGSGAEAKPTSAAGASTEKVSTDQYRNYAVIAGIITGVSALGWYLKSSRKKEQVQD
Sbjct: 1 MTTIMASRIAVRNFSRRFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETPAASSGSGAEAKPTSAAGASTEKVSTDQYRNYAVIAGIITGVSALGWYLKSSRKKEQVQD 118
BLAST of Chh248540.1 vs. ExPASy TrEMBL
Match: A0A067EW11|A0A067EW11_CITSI (Copper ion binding protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g044735mg PE=4 SV=1) HSP 1 Score: 236.498 bits (602), Expect = 1.291e-77 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 Query: 1 MTTIMASRIAVRNFSRRFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETPAASSGSGAEAKPTSAAGASTEKVSTDQYRNYAVIAGIITGVSALGWYLKSSRKKEQVQD 118
MTTIMASRIAVRNFSRRFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETPAASSGSGAEAKPTSAAGASTEKVSTDQYRNYAVIAGIITGVSALGWYLKSSRKKEQVQD
Sbjct: 66 MTTIMASRIAVRNFSRRFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETPAASSGSGAEAKPTSAAGASTEKVSTDQYRNYAVIAGIITGVSALGWYLKSSRKKEQVQD 183
BLAST of Chh248540.1 vs. ExPASy TrEMBL
Match: V4SAH4|V4SAH4_CITCL (Copper ion binding protein OS=Citrus clementina OX=85681 GN=CICLE_v10029605mg PE=4 SV=1) HSP 1 Score: 229.565 bits (584), Expect = 7.717e-76 Identity = 115/118 (97.46%), Postives = 115/118 (97.46%), Query Frame = 0 Query: 1 MTTIMASRIAVRNFSRRFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETPAASSGSGAEAKPTSAAGASTEKVSTDQYRNYAVIAGIITGVSALGWYLKSSRKKEQVQD 118
MTTIMASRIAVRNFSRRFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETP ASSGSGAEAKPTSA GASTEKVSTDQYRNYAVIAGIITGVSALGWYLKSS KKEQVQD
Sbjct: 1 MTTIMASRIAVRNFSRRFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETPTASSGSGAEAKPTSATGASTEKVSTDQYRNYAVIAGIITGVSALGWYLKSSGKKEQVQD 118
BLAST of Chh248540.1 vs. ExPASy TrEMBL
Match: A0A5J5BQ65|A0A5J5BQ65_9ASTE (Copper ion binding protein OS=Nyssa sinensis OX=561372 GN=F0562_022262 PE=4 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 7.327e-52 Identity = 83/115 (72.17%), Postives = 99/115 (86.09%), Query Frame = 0 Query: 5 MASRIAVRNFSRRFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETPAASSGSGAEAKPTSAAGASTEKVSTDQYRNYAVIAGIITGVSALGWYLKSSRKK-EQVQD 118
MA+RIAVR SRR SSSGK+LSEEEKAAENVY+KK EQEKLEK+ARKGP+PEE A SSGS ++ KP+ A +ST VSTD+YRNYAV+AG++TG++ALGWYLKSS KK E+VQD
Sbjct: 1 MATRIAVRYVSRRLSSSGKILSEEEKAAENVYVKKTEQEKLEKLARKGPQPEEKAATSSGSASDVKPSGPAASSTSGVSTDKYRNYAVVAGVVTGLAALGWYLKSSAKKPEEVQD 115
BLAST of Chh248540.1 vs. ExPASy TrEMBL
Match: A0A2P5BHE7|A0A2P5BHE7_TREOI (Copper ion binding protein OS=Trema orientale OX=63057 GN=TorRG33x02_321100 PE=4 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 1.141e-51 Identity = 89/120 (74.17%), Postives = 101/120 (84.17%), Query Frame = 0 Query: 5 MASRIAVRNFSR--RFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETPAASSGSGA-EAKPTSAA---GASTEKVSTDQYRNYAVIAGIITGVSALGWYLKSSRKKEQVQD 118
MASRIA R SR RFSS GKVLSEEEKAAENVYIKK EQEKLEK+ARKGPKPEE P+ASSG+ A EAKP++ A GASTEKVSTD+YRNYAV+AG+IT A+GWYL+ S KK++VQD
Sbjct: 1 MASRIAARFASRTRRFSSGGKVLSEEEKAAENVYIKKTEQEKLEKLARKGPKPEENPSASSGASATEAKPSATASTSGASTEKVSTDKYRNYAVVAGVITAFGAVGWYLRGSEKKQEVQD 120
BLAST of Chh248540.1 vs. ExPASy TrEMBL
Match: A0A6P3Z593|A0A6P3Z593_ZIZJJ (Uncharacterized protein At2g27730, mitochondrial OS=Ziziphus jujuba OX=326968 GN=LOC107409830 PE=4 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 1.660e-51 Identity = 83/118 (70.34%), Postives = 99/118 (83.90%), Query Frame = 0 Query: 5 MASRIAVRNFSRRFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETPAASSGSGAEAKP----TSAAGASTEKVSTDQYRNYAVIAGIITGVSALGWYLKSSRKKEQVQD 118
MASR+ R RRFSSSGK+LSEEEKAAENVYIKK+EQEKLEK+ARKGPKP+E S GS A++KP +SA GASTE+VSTD+YRNYAV+AG++TG+ ALGWYLKS+ KK +VQD
Sbjct: 1 MASRMVARFVPRRFSSSGKILSEEEKAAENVYIKKIEQEKLEKLARKGPKPDEATETSGGSVADSKPSGSTSSAGGASTERVSTDKYRNYAVVAGVVTGLGALGWYLKSNAKKPEVQD 118
BLAST of Chh248540.1 vs. ExPASy TrEMBL
Match: A0A5B7AHM3|A0A5B7AHM3_DAVIN (Copper ion binding OS=Davidia involucrata OX=16924 GN=Din_025045 PE=4 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 8.826e-51 Identity = 83/115 (72.17%), Postives = 95/115 (82.61%), Query Frame = 0 Query: 5 MASRIAVRNFSRRFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETPAASSGSGAEAKPTSAAGASTEKVSTDQYRNYAVIAGIITGVSALGWYLKSSRKK-EQVQD 118
MA+RIAVR SRRFSS GKVL EEEKAAENVY+KK E EKLEK+ARKGP PEE PA SSGS ++ KP+ +ST VSTD+YRNYAVIAG++TG +ALGWYLKSS KK E+VQD
Sbjct: 1 MATRIAVRYVSRRFSSGGKVLGEEEKAAENVYVKKFELEKLEKLARKGPNPEEKPATSSGSASDVKPSGPHASSTSGVSTDKYRNYAVIAGVVTGFAALGWYLKSSAKKPEEVQD 115
BLAST of Chh248540.1 vs. ExPASy TrEMBL
Match: A0A5B7AKH2|A0A5B7AKH2_DAVIN (Copper ion binding OS=Davidia involucrata OX=16924 GN=Din_025044 PE=4 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 1.496e-50 Identity = 85/115 (73.91%), Postives = 98/115 (85.22%), Query Frame = 0 Query: 5 MASRIAVRNFSRRFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETPAASSGSGAEAKPTSAAGASTEKVSTDQYRNYAVIAGIITGVSALGWYLKSSRKK-EQVQD 118
MA+RIAVR SRR SSSGK+LSEEEKAAENVYIKK EQEKLEK+ARKGPKPEE PA S GS ++ KP+ A +ST VSTD+YRNYAV+AG++TG +ALGWYLKSS KK E+VQD
Sbjct: 1 MATRIAVRYVSRRLSSSGKILSEEEKAAENVYIKKTEQEKLEKLARKGPKPEEKPATSPGSISDVKPSGPA-SSTSGVSTDKYRNYAVVAGVLTGFAALGWYLKSSSKKAEEVQD 114
BLAST of Chh248540.1 vs. ExPASy TrEMBL
Match: A0A6J0ZU98|A0A6J0ZU98_9ROSI (Uncharacterized protein At2g27730, mitochondrial OS=Herrania umbratica OX=108875 GN=LOC110412150 PE=4 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 1.999e-50 Identity = 86/118 (72.88%), Postives = 99/118 (83.90%), Query Frame = 0 Query: 5 MASRIAVRNFSRRFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETPAA-SSGSGAEAKP---TSAAGASTEKVSTDQYRNYAVIAGIITGVSALGWYLKSSRKKEQVQD 118
MA+R+AVR SRRFSS GK+LSEEEKAAENVYIKK+EQEKLEK+ARKGPKPE+T AA S GS +AKP TS +GASTEKVSTD+Y+NYAV+AG IT ALGWYL S KK++VQD
Sbjct: 1 MATRMAVRYISRRFSSGGKILSEEEKAAENVYIKKIEQEKLEKLARKGPKPEDTTAAGSGGSVTDAKPSDSTSTSGASTEKVSTDKYKNYAVLAGAITLGGALGWYLTSKEKKQEVQD 118
BLAST of Chh248540.1 vs. ExPASy TrEMBL
Match: A0A2P5CWP9|A0A2P5CWP9_PARAD (Copper ion binding protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_117610 PE=4 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 3.724e-50 Identity = 88/120 (73.33%), Postives = 100/120 (83.33%), Query Frame = 0 Query: 5 MASRIAVRNFSR--RFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETPAASSGSGA-EAKPTSAA---GASTEKVSTDQYRNYAVIAGIITGVSALGWYLKSSRKKEQVQD 118
M SRIA R SR RFSSSGKVLSEEEKAAENVYIKK EQEKLEK+ARKG KPEE P+ASSG+ A EAKP++ A GASTEKVSTD+YRNYAV+AG+IT A+GWYL+ S KK++VQD
Sbjct: 1 MGSRIAARFASRTRRFSSSGKVLSEEEKAAENVYIKKTEQEKLEKLARKGLKPEENPSASSGASATEAKPSATASTSGASTEKVSTDKYRNYAVVAGVITAFGAVGWYLRGSEKKQEVQD 120
BLAST of Chh248540.1 vs. ExPASy Swiss-Prot
Match: UMP2_ARATH (Uncharacterized protein At2g27730, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g27730 PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.781e-26 Identity = 66/119 (55.46%), Postives = 89/119 (74.79%), Query Frame = 0 Query: 5 MASRIAVRNFSRRFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETPAASSGSGAEAK----PTSAAGASTEKVSTDQYRNYAVIAGIITGVSALGWYLKSSRKKE-QVQD 118
MA+R A+R SRRFSS GKVLSEEE+AAENV+IKK+EQEKL+K+AR+GP + ++GS +EAK SA+ S KVS D+ RNYAV+AG++ V ++GWYLK+ KK+ +VQ+
Sbjct: 1 MATRNALRIVSRRFSS-GKVLSEEERAAENVFIKKMEQEKLQKLARQGPGEQ-----AAGSASEAKVAGATASASAESGPKVSEDKNRNYAVVAGVVAIVGSIGWYLKAGGKKQPEVQE 113
BLAST of Chh248540.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr2:11820056-11820867 REVERSE LENGTH=113) HSP 1 Score: 98.2117 bits (243), Expect = 1.354e-27 Identity = 67/120 (55.83%), Postives = 90/120 (75.00%), Query Frame = 0 Query: 5 MASRIAVRNFSRRFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETPAASSGSGAEAK----PTSAAGASTEKVSTDQYRNYAVIAGIITGVSALGWYLKSSRKKE-QVQD* 119
MA+R A+R SRRFSS GKVLSEEE+AAENV+IKK+EQEKL+K+AR+GP + ++GS +EAK SA+ S KVS D+ RNYAV+AG++ V ++GWYLK+ KK+ +VQ+*
Sbjct: 1 MATRNALRIVSRRFSS-GKVLSEEERAAENVFIKKMEQEKLQKLARQGPGEQ-----AAGSASEAKVAGATASASAESGPKVSEDKNRNYAVVAGVVAIVGSIGWYLKAGGKKQPEVQE* 114
BLAST of Chh248540.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr2:11820056-11820867 REVERSE LENGTH=113) HSP 1 Score: 98.2117 bits (243), Expect = 1.354e-27 Identity = 67/120 (55.83%), Postives = 90/120 (75.00%), Query Frame = 0 Query: 5 MASRIAVRNFSRRFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETPAASSGSGAEAK----PTSAAGASTEKVSTDQYRNYAVIAGIITGVSALGWYLKSSRKKE-QVQD* 119
MA+R A+R SRRFSS GKVLSEEE+AAENV+IKK+EQEKL+K+AR+GP + ++GS +EAK SA+ S KVS D+ RNYAV+AG++ V ++GWYLK+ KK+ +VQ+*
Sbjct: 1 MATRNALRIVSRRFSS-GKVLSEEERAAENVFIKKMEQEKLQKLARQGPGEQ-----AAGSASEAKVAGATASASAESGPKVSEDKNRNYAVVAGVVAIVGSIGWYLKAGGKKQPEVQE* 114
BLAST of Chh248540.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr2:11820056-11820867 REVERSE LENGTH=113) HSP 1 Score: 98.2117 bits (243), Expect = 1.354e-27 Identity = 67/120 (55.83%), Postives = 90/120 (75.00%), Query Frame = 0 Query: 5 MASRIAVRNFSRRFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETPAASSGSGAEAK----PTSAAGASTEKVSTDQYRNYAVIAGIITGVSALGWYLKSSRKKE-QVQD* 119
MA+R A+R SRRFSS GKVLSEEE+AAENV+IKK+EQEKL+K+AR+GP + ++GS +EAK SA+ S KVS D+ RNYAV+AG++ V ++GWYLK+ KK+ +VQ+*
Sbjct: 1 MATRNALRIVSRRFSS-GKVLSEEERAAENVFIKKMEQEKLQKLARQGPGEQ-----AAGSASEAKVAGATASASAESGPKVSEDKNRNYAVVAGVVAIVGSIGWYLKAGGKKQPEVQE* 114
BLAST of Chh248540.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr2:11820056-11820867 REVERSE LENGTH=113) HSP 1 Score: 98.2117 bits (243), Expect = 1.354e-27 Identity = 67/120 (55.83%), Postives = 90/120 (75.00%), Query Frame = 0 Query: 5 MASRIAVRNFSRRFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETPAASSGSGAEAK----PTSAAGASTEKVSTDQYRNYAVIAGIITGVSALGWYLKSSRKKE-QVQD* 119
MA+R A+R SRRFSS GKVLSEEE+AAENV+IKK+EQEKL+K+AR+GP + ++GS +EAK SA+ S KVS D+ RNYAV+AG++ V ++GWYLK+ KK+ +VQ+*
Sbjct: 1 MATRNALRIVSRRFSS-GKVLSEEERAAENVFIKKMEQEKLQKLARQGPGEQ-----AAGSASEAKVAGATASASAESGPKVSEDKNRNYAVVAGVVAIVGSIGWYLKAGGKKQPEVQE* 114 The following BLAST results are available for this feature:
BLAST of Chh248540.1 vs. ExPASy TrEMBL
Analysis Date: 2024-02-02 (Blastp of Citrus hongheensis cv. HH v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of Chh248540.1 vs. ExPASy Swiss-Prot
Analysis Date: 2024-02-02 (Blastp of Citrus hongheensis cv. HH v1.0 proteins vs UniProt Swissprot) Total hits: 1 Position : 0 Zoom : x 1
BLAST of Chh248540.1 vs. Araport11
Analysis Date: 2024-02-02 (Blastp of Citrus hongheensis cv. HH v1.0 proteins vs Araport11) Total hits: 4 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus hongheensis cv. HH v1.0 proteins
Date Performed: 2024-02-02 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Chh248540.1-HH_v1 ID=Chh248540.1-HH_v1; Name=Chh248540.1; organism=Citrus hongheensis; type=mRNA; length=357bpback to top protein sequence of Chh248540.1-HH_v1 >Chh248540.1-HH_v1 ID=Chh248540.1-HH_v1; Name=Chh248540.1-HH_v1; organism=Citrus hongheensis; type=polypeptide; length=119bpback to top mRNA from alignment at contig272:5943675..5946331+ Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2657bp; location=Sequence derived from: contig272:5943675..5946331+ (Citrus hongheensisback to top Coding sequence (CDS) from alignment at contig272:5943675..5946331+ >Chh248540.1-HH_v1 ID=Chh248540.1-HH_v1; Name=Chh248540.1; organism=Citrus hongheensis; type=CDS; length=357bp; location=Sequence derived from: contig272:5943675..5946331+ (Citrus hongheensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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