Cms210430.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Cms210430.1 vs. ExPASy TrEMBL
Match: A0A2H5QCK7|A0A2H5QCK7_CITUN (Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_216820 PE=4 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 3.845e-26 Identity = 68/109 (62.39%), Postives = 78/109 (71.56%), Query Frame = 0 Query: 1 MLSEGCDEGRSFLDANHTPNNLASWKGRVDDDLFQTLNNPLTQLDQHML--------SG----KMPEVMISRANTVSKQNSDDNISCRTMLTQIGCSSIPTISASSGKG 97
MLS+GCDEG S LD+NHTP NL S KGRVD D FQ LNNP T L QH+L SG + E ++SRAN+VSKQ SDDN+SCRT +TQI SSIPTIS SSG+G
Sbjct: 1 MLSKGCDEGHSLLDSNHTPYNLDSLKGRVDGDFFQALNNPPTHLHQHILRKVDSSSFSGMGTEHLLEAVVSRANSVSKQISDDNVSCRTTVTQISISSIPTISPSSGQG 109
BLAST of Cms210430.1 vs. ExPASy TrEMBL
Match: V4UDF8|V4UDF8_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029996mg PE=4 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 4.867e-26 Identity = 66/109 (60.55%), Postives = 77/109 (70.64%), Query Frame = 0 Query: 1 MLSEGCDEGRSFLDANHTPNNLASWKGRVDDDLFQTLNNPLTQLDQHML------------SGKMPEVMISRANTVSKQNSDDNISCRTMLTQIGCSSIPTISASSGKG 97
MLS+GCDEG S LD+NHTP NL S KGRVD D FQ LNNP T L QH+L + + E ++SRAN+VSKQ SDDN+SCRT +TQI SSIPTIS SSG+G
Sbjct: 1 MLSKGCDEGHSLLDSNHTPYNLDSLKGRVDGDFFQALNNPPTHLHQHILRKVDSSSFSGMGTEHLLEAVVSRANSVSKQISDDNVSCRTTVTQISISSIPTISPSSGQG 109
BLAST of Cms210430.1 vs. ExPASy TrEMBL
Match: A0A2H5QCD9|A0A2H5QCD9_CITUN (BHLH domain-containing protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_216840 PE=4 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.493e-22 Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 0 Query: 1 MLSEGCDEGRSFLDANHTPNNLASWKGRVDDDLFQTLNNPLTQLDQHMLSGKMP 54
+LS+GCDEGRS LDA H PNNLASWKGRV+DDLFQ LNNPLT LDQHMLSG+MP
Sbjct: 415 LLSKGCDEGRSSLDAKHRPNNLASWKGRVEDDLFQALNNPLTHLDQHMLSGQMP 468 HSP 2 Score: 63.5438 bits (153), Expect = 1.653e-8 Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 0 Query: 34 FQTLNNPLTQLDQHMLSG----KMPEVMISRANTVSKQNSDDNISCRTMLTQIGCSSIPTISASSGK 96
F ++N + LD SG + E ++SRAN+VSKQ SDDN+SCRT LTQI SSIPT+S SSG+
Sbjct: 548 FYSVNEGI--LDGSSFSGMGTEHLLEAVVSRANSVSKQISDDNVSCRTTLTQISSSSIPTVSPSSGQ 612
BLAST of Cms210430.1 vs. ExPASy TrEMBL
Match: A0A2H5QDK8|A0A2H5QDK8_CITUN (BHLH domain-containing protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_216840 PE=4 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.510e-22 Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 0 Query: 1 MLSEGCDEGRSFLDANHTPNNLASWKGRVDDDLFQTLNNPLTQLDQHMLSGKMP 54
+LS+GCDEGRS LDA H PNNLASWKGRV+DDLFQ LNNPLT LDQHMLSG+MP
Sbjct: 415 LLSKGCDEGRSSLDAKHRPNNLASWKGRVEDDLFQALNNPLTHLDQHMLSGQMP 468 HSP 2 Score: 63.5438 bits (153), Expect = 1.642e-8 Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 0 Query: 46 QHMLSGKMPEVMISRANTVSKQNSDDNISCRTMLTQIGCSSIPTISASSGK 96
+H+L E ++SRAN+VSKQ SDDN+SCRT LTQI SSIPT+S SSG+
Sbjct: 567 EHLL-----EAVVSRANSVSKQISDDNVSCRTTLTQISSSSIPTVSPSSGQ 612
BLAST of Cms210430.1 vs. ExPASy TrEMBL
Match: A0A067DUS9|A0A067DUS9_CITSI (BHLH domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g036631mg PE=4 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.876e-22 Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 0 Query: 1 MLSEGCDEGRSFLDANHTPNNLASWKGRVDDDLFQTLNNPLTQLDQHMLSGKMP 54
+LS+GCDEGRS LDA H PNNLASWKGRV+DDLFQ LNNPLT LDQHMLSG+MP
Sbjct: 447 LLSKGCDEGRSSLDAKHRPNNLASWKGRVEDDLFQALNNPLTHLDQHMLSGQMP 500 HSP 2 Score: 63.1586 bits (152), Expect = 1.846e-8 Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 0 Query: 34 FQTLNNPLTQLDQHMLSG----KMPEVMISRANTVSKQNSDDNISCRTMLTQIGCSSIPTISASSGK 96
F ++N + LD SG + E ++SRAN+VSKQ SDDN+SCRT LTQI SSIPT+S SSG+
Sbjct: 580 FYSVNEGI--LDGSSFSGMGTEHLLEAVVSRANSVSKQISDDNVSCRTTLTQISSSSIPTVSPSSGQ 644
BLAST of Cms210430.1 vs. ExPASy TrEMBL
Match: V4SA51|V4SA51_CITCL (BHLH domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10029797mg PE=4 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 1.236e-21 Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 0 Query: 1 MLSEGCDEGRSFLDANHTPNNLASWKGRVDDDLFQTLNNPLTQLDQHMLSGKMP 54
+LS+GCDEG S LDA H PNNLASWKGRV+DDLFQ LNNPLT LDQHMLSG+MP
Sbjct: 447 LLSKGCDEGHSSLDAKHRPNNLASWKGRVEDDLFQALNNPLTHLDQHMLSGQMP 500 HSP 2 Score: 63.1586 bits (152), Expect = 1.846e-8 Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 0 Query: 34 FQTLNNPLTQLDQHMLSG----KMPEVMISRANTVSKQNSDDNISCRTMLTQIGCSSIPTISASSGK 96
F ++N + LD SG + E ++SRAN+VSKQ SDDN+SCRT LTQI SSIPT+S SSG+
Sbjct: 580 FYSVNEGI--LDGSSFSGMGTEHLLEAVVSRANSVSKQISDDNVSCRTTLTQISSSSIPTVSPSSGQ 644
BLAST of Cms210430.1 vs. ExPASy TrEMBL
Match: A0A2H5QDJ6|A0A2H5QDJ6_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_216750 PE=4 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 2.871e-9 Identity = 39/43 (90.70%), Postives = 40/43 (93.02%), Query Frame = 0 Query: 55 EVMISRANTVSKQNSDDNISCRTMLTQIGCSSIPTISASSGKG 97
+ MISRANTVSKQNSDDNISCRTMLTQI CSSIPTIS SSGKG
Sbjct: 105 KAMISRANTVSKQNSDDNISCRTMLTQISCSSIPTISPSSGKG 147
BLAST of Cms210430.1 vs. ExPASy TrEMBL
Match: A0A2H5QCE4|A0A2H5QCE4_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_216750 PE=4 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 3.155e-9 Identity = 39/43 (90.70%), Postives = 40/43 (93.02%), Query Frame = 0 Query: 55 EVMISRANTVSKQNSDDNISCRTMLTQIGCSSIPTISASSGKG 97
+ MISRANTVSKQNSDDNISCRTMLTQI CSSIPTIS SSGKG
Sbjct: 87 KAMISRANTVSKQNSDDNISCRTMLTQISCSSIPTISPSSGKG 129
BLAST of Cms210430.1 vs. ExPASy TrEMBL
Match: A0A2H5QCC9|A0A2H5QCC9_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_216760 PE=4 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 3.499e-9 Identity = 39/43 (90.70%), Postives = 40/43 (93.02%), Query Frame = 0 Query: 55 EVMISRANTVSKQNSDDNISCRTMLTQIGCSSIPTISASSGKG 97
+ MISRANTVSKQNSDDNISCRTMLTQI CSSIPTIS SSGKG
Sbjct: 84 KAMISRANTVSKQNSDDNISCRTMLTQISCSSIPTISPSSGKG 126 The following BLAST results are available for this feature:
BLAST of Cms210430.1 vs. ExPASy TrEMBL
Analysis Date: 2024-02-02 (Blastp of Citrus mangshanensis cv. MSYG v1.0 proteins vs UniProt TrEMBL) Total hits: 9 Position : 0 Zoom : x 1
BLAST of Cms210430.1 vs. ExPASy TrEMBL
Analysis Date: 2024-02-02 (Blastp of Citrus mangshanensis cv. MSYG v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of Cms210430.1 vs. ExPASy TrEMBL
Analysis Date: 2024-02-02 (Blastp of Citrus mangshanensis cv. MSYG v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cms210430.1-MSYG_v1 ID=Cms210430.1-MSYG_v1; Name=Cms210430.1; organism=Citrus mangshanensis; type=mRNA; length=474bpback to top protein sequence of Cms210430.1-MSYG_v1 >Cms210430.1-MSYG_v1 ID=Cms210430.1-MSYG_v1; Name=Cms210430.1-MSYG_v1; organism=Citrus mangshanensis; type=polypeptide; length=158bpback to top mRNA from alignment at contig175:1815689..1816510+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=822bp; location=Sequence derived from: contig175:1815689..1816510+ (Citrus mangshanensisback to top Coding sequence (CDS) from alignment at contig175:1815689..1816510+ >Cms210430.1-MSYG_v1 ID=Cms210430.1-MSYG_v1; Name=Cms210430.1; organism=Citrus mangshanensis; type=CDS; length=474bp; location=Sequence derived from: contig175:1815689..1816510+ (Citrus mangshanensisback to top |