Cmt033700.1 | Citrus Genome Database

Transcript Overview


Name	Cmt033700.1
Unique Name	Cmt033700.1-HZY-T_v1
Type	mRNA
Organism	Citrus maxima (Pomelo, pummelo)
Sequence length	372

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	2024-01-31
InterProScan Analysis for Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) v1.0 proteins	2024-02-08
Blastp of Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) v1.0 proteins vs UniProt TrEMBL	2024-02-08
Blastp of Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) v1.0 proteins vs UniProt Swissprot	2024-02-08
Blastp of Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) v1.0 proteins vs Araport11	2024-02-08

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
cmhmpjR427	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
caucmhL316	Citrus australis genome v1.0 (UQ)	Citrus australis
cmcmhL417	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
clecmhL291	Citrus limon cv. Eureka genome v1.0	Citrus limon
clecmhL337	Citrus limon cv. Eureka genome v1.0	Citrus limon
cmhcmjR444	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
cmhdvaR216	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
cmhdvbR216	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
cmhfhsR416	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
cmhswoR364	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
cmhzkR524	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata

Orthologs


Gene/Transcript	Assembly	Species
Cs_ont_8g023660.1	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
Pt8g005070.1	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
CMJ_chr8_018290.1	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Cmt033700	Cmt033700-HZY-T_v1	Citrus maxima	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cmt033700.1.exon1	Cmt033700.1.exon1-HZY-T_v1	Citrus maxima	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cmt033700.1.cds.1	Cmt033700.1.cds.1-HZY-T_v1	Citrus maxima	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Cmt033700.1-HZY-T_v1	Cmt033700.1-HZY-T_v1	Citrus maxima	polypeptide
Cmt033700.1-HZY-T_v1	Cmt033700.1-HZY-T_v1-protein	Citrus maxima	polypeptide

Homology

[Close]

BLAST of Cmt033700.1 vs. ExPASy TrEMBL
Match: A0A2H5QAU7|A0A2H5QAU7_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_212530 PE=4 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 2.710e-62
Identity = 104/146 (71.23%), Postives = 109/146 (74.66%), Query Frame = 0

Query:    1 MATSFLHSQDCLRNSRSSPRF-----------------------NKPPPGDDQSQSLMAIKLPSQNNLVISRVKILKRGEAVLPPSLIKKEDASEKQIALCSCNVESDNVDFVAGMTFFSSPPPNTVPLPRFLAINVNHTSTCGLV 123
            MAT+FLHSQDCLRN RSSPRF                        K   GDDQS+SL  IKLPSQNNLVI RVKILK GEAVLPPSLIKKEDASEKQIA+CS NVESDNVDFVAGM FFSSPPP+ VPLPRFL INV+H STCGLV
Sbjct:    1 MATAFLHSQDCLRNFRSSPRFNKPPPGPNPTPKPVPNLFSNRLRRKRRSGDDQSRSLTVIKLPSQNNLVIGRVKILKHGEAVLPPSLIKKEDASEKQIAVCSSNVESDNVDFVAGMAFFSSPPPSAVPLPRFLPINVSHASTCGLV 146

[Close]

BLAST of Cmt033700.1 vs. ExPASy TrEMBL
Match: A0A067DP14|A0A067DP14_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g044893mg PE=4 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 4.616e-48
Identity = 94/136 (69.12%), Postives = 99/136 (72.79%), Query Frame = 0

Query:    1 MATSFLHSQDCLRNSRSSPRF-------------------NKPP----PGDDQSQSLMAIKLPSQNNLVISRVKILKRGEAVLPPSLIKKEDASEKQIALCSCNVESDNVDFVAGMTFFSSPPPNTVPLPRFLAIN 113
            MAT+FLHSQDCLRN RSSPRF                   N+P      GDDQS+SL  IKLPSQNNLVI RVKILK GEAVLPPSLIKKEDASEKQIA+CS NVESDNV F AG  F SSPPP+ VPLPRFLAIN
Sbjct:    1 MATAFLHSQDCLRNFRSSPRFNKPPPGPNPTPKPVPNLFSNRPRRKRRSGDDQSRSLTVIKLPSQNNLVIGRVKILKHGEAVLPPSLIKKEDASEKQIAVCSSNVESDNVGFFAGTAFSSSPPPSAVPLPRFLAIN 136

The following BLAST results are available for this feature:

BLAST of Cmt033700.1 vs. ExPASy TrEMBL
BLAST of Cmt033700.1 vs. ExPASy TrEMBL
BLAST of Cmt033700.1 vs. ExPASy TrEMBL

BLAST of Cmt033700.1 vs. ExPASy TrEMBL
Analysis Date: 2024-02-08 (Blastp of Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) v1.0 proteins vs UniProt TrEMBL)
Total hits: 2

Position :

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x 1


Match Name	E-value	Identity	Description
A0A2H5QAU7\|A0A2H5QAU7_CITUN	2.710e-62	71.23	Uncharacterized protein OS=Citrus unshiu OX=55188 ...	[more]
A0A067DP14\|A0A067DP14_CITSI	4.616e-48	69.12	Uncharacterized protein (Fragment) OS=Citrus sinen...	[more]

BLAST of Cmt033700.1 vs. ExPASy TrEMBL
Analysis Date: 2024-02-08 (Blastp of Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) v1.0 proteins vs UniProt Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Cmt033700.1 vs. ExPASy TrEMBL
Analysis Date: 2024-02-08 (Blastp of Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) v1.0 proteins vs Araport11)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan Analysis for Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) v1.0 proteins
Date Performed: 2024-02-08

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33670	SPLICING FACTOR, PROLINE- AND GLUTAMINE-RICH-LIKE	coord: 1..111

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:4149594..4149965+
coding sequence from alignment at chr8:4149594..4149965+

mRNA sequence

>Cmt033700.1-HZY-T_v1 ID=Cmt033700.1-HZY-T_v1; Name=Cmt033700.1; organism=Citrus maxima; type=mRNA; length=372bp
ATGGCGACATCATTCCTTCACTCTCAGGATTGCCTTCGCAATTCCCGATC
CTCTCCTCGCTTCAACAAACCTCCCCCCGGCGATGATCAGTCTCAGTCCT
TGATGGCGATCAAATTACCCTCACAAAATAACCTTGTGATCAGCCGGGTC
AAAATCCTTAAACGCGGCGAGGCGGTGCTGCCGCCTAGCTTGATCAAGAA
GGAGGACGCTTCCGAGAAGCAAATCGCACTTTGTAGCTGTAATGTTGAGT
CTGATAACGTGGATTTTGTTGCTGGTATGACGTTCTTCTCGTCGCCACCT
CCCAATACGGTTCCTCTTCCGCGGTTTTTGGCTATTAACGTAAACCATAC
GTCTACTTGTGGTTTGGTGTGA

protein sequence of Cmt033700.1-HZY-T_v1

>Cmt033700.1-HZY-T_v1 ID=Cmt033700.1-HZY-T_v1; Name=Cmt033700.1-HZY-T_v1; organism=Citrus maxima; type=polypeptide; length=124bp
MATSFLHSQDCLRNSRSSPRFNKPPPGDDQSQSLMAIKLPSQNNLVISRV
KILKRGEAVLPPSLIKKEDASEKQIALCSCNVESDNVDFVAGMTFFSSPP
PNTVPLPRFLAINVNHTSTCGLV*

mRNA from alignment at chr8:4149594..4149965+

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=372bp; location=Sequence derived from: chr8:4149594..4149965+ (Citrus maxima
ATGGCGACATCATTCCTTCACTCTCAGGATTGCCTTCGCAATTCCCGATC
CTCTCCTCGCTTCAACAAACCTCCCCCCGGCGATGATCAGTCTCAGTCCT
TGATGGCGATCAAATTACCCTCACAAAATAACCTTGTGATCAGCCGGGTC
AAAATCCTTAAACGCGGCGAGGCGGTGCTGCCGCCTAGCTTGATCAAGAA
GGAGGACGCTTCCGAGAAGCAAATCGCACTTTGTAGCTGTAATGTTGAGT
CTGATAACGTGGATTTTGTTGCTGGTATGACGTTCTTCTCGTCGCCACCT
CCCAATACGGTTCCTCTTCCGCGGTTTTTGGCTATTAACGTAAACCATAC
GTCTACTTGTGGTTTGGTGTGA

Coding sequence (CDS) from alignment at chr8:4149594..4149965+

>Cmt033700.1-HZY-T_v1 ID=Cmt033700.1-HZY-T_v1; Name=Cmt033700.1; organism=Citrus maxima; type=CDS; length=372bp; location=Sequence derived from: chr8:4149594..4149965+ (Citrus maxima
ATGGCGACATCATTCCTTCACTCTCAGGATTGCCTTCGCAATTCCCGATC
CTCTCCTCGCTTCAACAAACCTCCCCCCGGCGATGATCAGTCTCAGTCCT
TGATGGCGATCAAATTACCCTCACAAAATAACCTTGTGATCAGCCGGGTC
AAAATCCTTAAACGCGGCGAGGCGGTGCTGCCGCCTAGCTTGATCAAGAA
GGAGGACGCTTCCGAGAAGCAAATCGCACTTTGTAGCTGTAATGTTGAGT
CTGATAACGTGGATTTTGTTGCTGGTATGACGTTCTTCTCGTCGCCACCT
CCCAATACGGTTCCTCTTCCGCGGTTTTTGGCTATTAACGTAAACCATAC
GTCTACTTGTGGTTTGGTGTGA