Cmt036310.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Cmt036310.1 vs. ExPASy TrEMBL
Match: A0A2H5Q9F8|A0A2H5Q9F8_CITUN (Helicase ATP-binding domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_208720 PE=4 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.422e-23 Identity = 52/74 (70.27%), Postives = 56/74 (75.68%), Query Frame = 0 Query: 12 FRGAKESGLRTTICDAETSKISAPCQEIPLKQPSIPILDEGYTPRNEKADVLLFVAKVRTPRKVVLSGKLCQNH 85
F G K+ ICD ETSKISA CQEI LKQPSI ILDEG+TPRNE DVL +AKV+TPRKVVLSG L QNH
Sbjct: 430 FLGYKQ--FSAIICDTETSKISATCQEILLKQPSILILDEGHTPRNENTDVLQSLAKVQTPRKVVLSGTLYQNH 501
BLAST of Cmt036310.1 vs. ExPASy TrEMBL
Match: V4S865|V4S865_CITCL (Helicase ATP-binding domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10027795mg PE=4 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 5.663e-22 Identity = 52/74 (70.27%), Postives = 56/74 (75.68%), Query Frame = 0 Query: 12 FRGAKESGLRTTICDAETSKISAPCQEIPLKQPSIPILDEGYTPRNEKADVLLFVAKVRTPRKVVLSGKLCQNH 85
F G K+ ICD ETSKISA CQEI LKQPSI ILDEG+TPRNE DVL +AKV+TPRKVVLSG L QNH
Sbjct: 428 FLGYKQ--FSAIICDTETSKISATCQEILLKQPSILILDEGHTPRNENTDVLQSLAKVQTPRKVVLSGTLYQNH 499
BLAST of Cmt036310.1 vs. ExPASy TrEMBL
Match: A0A5C7I668|A0A5C7I668_9ROSI (Helicase ATP-binding domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_011599 PE=4 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 2.770e-20 Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 0 Query: 12 FRGAKESGLRTTICDAETSKISAPCQEIPLKQPSIPILDEGYTPRNEKADVLLFVAKVRTPRKVVLSGKLCQNH 85
F G K+ + +CD E+S++S CQEI LKQPSI ILDEG+TPRNE DVL ++KV+TPRKVVLSG L QNH
Sbjct: 403 FLGYKQ--FSSIVCDKESSQVSTACQEILLKQPSILILDEGHTPRNEDTDVLQSLSKVQTPRKVVLSGTLYQNH 474
BLAST of Cmt036310.1 vs. ExPASy TrEMBL
Match: A0A8J4VTU9|A0A8J4VTU9_9ROSI (Protein CHROMATIN REMODELING 35-like OS=Castanea mollissima OX=60419 GN=CMV_005983 PE=4 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.246e-20 Identity = 48/74 (64.86%), Postives = 54/74 (72.97%), Query Frame = 0 Query: 12 FRGAKESGLRTTICDAETSKISAPCQEIPLKQPSIPILDEGYTPRNEKADVLLFVAKVRTPRKVVLSGKLCQNH 85
F G K+ T +CD TS ISA CQEI LK PSI +LDEG+TPRNE DVL +AKV+TPRKVVLSG L QNH
Sbjct: 499 FLGYKQ--FSTIVCDNGTSNISASCQEILLKAPSILVLDEGHTPRNENTDVLQSLAKVQTPRKVVLSGTLYQNH 570
BLAST of Cmt036310.1 vs. ExPASy TrEMBL
Match: A0A6P4AC77|A0A6P4AC77_ZIZJJ (Protein CHROMATIN REMODELING 35 isoform X2 OS=Ziziphus jujuba OX=326968 GN=LOC107426814 PE=4 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.604e-20 Identity = 49/74 (66.22%), Postives = 54/74 (72.97%), Query Frame = 0 Query: 12 FRGAKESGLRTTICDAETSKISAPCQEIPLKQPSIPILDEGYTPRNEKADVLLFVAKVRTPRKVVLSGKLCQNH 85
F G K+ + ICD ETSK SA CQEI LK PSI ILDEG+TPRNE DVL +AKV+T RKVVLSG L QNH
Sbjct: 441 FLGYKQ--FSSIICDVETSKASASCQEILLKAPSILILDEGHTPRNENTDVLQSLAKVQTARKVVLSGTLYQNH 512
BLAST of Cmt036310.1 vs. ExPASy TrEMBL
Match: A0A978USC4|A0A978USC4_ZIZJJ (Protein CHROMATIN REMODELING 35-like OS=Ziziphus jujuba var. spinosa OX=714518 GN=FEM48_Zijuj09G0100100 PE=4 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.711e-20 Identity = 49/74 (66.22%), Postives = 54/74 (72.97%), Query Frame = 0 Query: 12 FRGAKESGLRTTICDAETSKISAPCQEIPLKQPSIPILDEGYTPRNEKADVLLFVAKVRTPRKVVLSGKLCQNH 85
F G K+ + ICD ETSK SA CQEI LK PSI ILDEG+TPRNE DVL +AKV+T RKVVLSG L QNH
Sbjct: 442 FLGYKQ--FSSIICDVETSKASASCQEILLKAPSILILDEGHTPRNENTDVLQSLAKVQTARKVVLSGTLYQNH 513
BLAST of Cmt036310.1 vs. ExPASy TrEMBL
Match: A0A6P4ADT8|A0A6P4ADT8_ZIZJJ (Protein CHROMATIN REMODELING 35 isoform X1 OS=Ziziphus jujuba OX=326968 GN=LOC107426814 PE=4 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.711e-20 Identity = 49/74 (66.22%), Postives = 54/74 (72.97%), Query Frame = 0 Query: 12 FRGAKESGLRTTICDAETSKISAPCQEIPLKQPSIPILDEGYTPRNEKADVLLFVAKVRTPRKVVLSGKLCQNH 85
F G K+ + ICD ETSK SA CQEI LK PSI ILDEG+TPRNE DVL +AKV+T RKVVLSG L QNH
Sbjct: 442 FLGYKQ--FSSIICDVETSKASASCQEILLKAPSILILDEGHTPRNENTDVLQSLAKVQTARKVVLSGTLYQNH 513
BLAST of Cmt036310.1 vs. ExPASy TrEMBL
Match: A0A7N2RDS5|A0A7N2RDS5_QUELO (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.793e-20 Identity = 48/74 (64.86%), Postives = 54/74 (72.97%), Query Frame = 0 Query: 12 FRGAKESGLRTTICDAETSKISAPCQEIPLKQPSIPILDEGYTPRNEKADVLLFVAKVRTPRKVVLSGKLCQNH 85
F G K+ T +CD TS ISA CQEI LK PSI +LDEG+TPRNE DVL +AKV+TPRKVVLSG L QNH
Sbjct: 504 FLGYKQ--FSTIVCDNGTSNISASCQEILLKAPSILVLDEGHTPRNENTDVLQSLAKVQTPRKVVLSGTLYQNH 575
BLAST of Cmt036310.1 vs. ExPASy TrEMBL
Match: A0A6A1V3V6|A0A6A1V3V6_9ROSI (SNF2 domain-containing protein CLASSY 3 OS=Morella rubra OX=262757 GN=CJ030_MR7G011642 PE=4 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 7.120e-20 Identity = 46/74 (62.16%), Postives = 54/74 (72.97%), Query Frame = 0 Query: 12 FRGAKESGLRTTICDAETSKISAPCQEIPLKQPSIPILDEGYTPRNEKADVLLFVAKVRTPRKVVLSGKLCQNH 85
F G K+ +CD E+SKISA CQEI LK PSI +LDEG+TPRNE D+L + KV+TPRKVVLSG L QNH
Sbjct: 474 FLGYKQ--FSNIVCDNESSKISASCQEILLKAPSILVLDEGHTPRNENTDMLQSLVKVQTPRKVVLSGTLYQNH 545
BLAST of Cmt036310.1 vs. ExPASy TrEMBL
Match: A0A1Q3BWE6|A0A1Q3BWE6_CEPFO (SNF2_N domain-containing protein/Helicase_C domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_15602 PE=4 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 7.558e-20 Identity = 47/74 (63.51%), Postives = 54/74 (72.97%), Query Frame = 0 Query: 12 FRGAKESGLRTTICDAETSKISAPCQEIPLKQPSIPILDEGYTPRNEKADVLLFVAKVRTPRKVVLSGKLCQNH 85
F G K+ T ICD +K+S+ CQEI LK PSI ILDEG+TPRNE DVL +AKV+TPRKVVLSG L QNH
Sbjct: 471 FLGYKQ--FSTIICDMSKTKMSSACQEILLKAPSILILDEGHTPRNENTDVLQSLAKVQTPRKVVLSGTLYQNH 542
BLAST of Cmt036310.1 vs. ExPASy Swiss-Prot
Match: CHR35_ARATH (Protein CHROMATIN REMODELING 35 OS=Arabidopsis thaliana OX=3702 GN=DRD1 PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.166e-17 Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 0 Query: 22 TTICDAETSKISAPCQEIPLKQPSIPILDEGYTPRNEKADVLLFVAKVRTPRKVVLSGKLCQNH 85
T +CD T +S CQEI LK PSI ILDEG+TPRNE ++L +A+V+TPRKVVLSG L QNH
Sbjct: 466 TIVCDDTTDSLS--CQEILLKVPSILILDEGHTPRNEDTNLLQSLAQVQTPRKVVLSGTLYQNH 527
BLAST of Cmt036310.1 vs. Araport11
Match: | (Symbols: CHR35, DMS1, DRD1 | DEFECTIVE IN MERISTEM SILENCING 1, DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1 | chr2:7097638-7101182 FORWARD LENGTH=888) HSP 1 Score: 78.1814 bits (191), Expect = 2.196e-18 Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 0 Query: 22 TTICDAETSKISAPCQEIPLKQPSIPILDEGYTPRNEKADVLLFVAKVRTPRKVVLSGKLCQNH 85
T +CD T +S CQEI LK PSI ILDEG+TPRNE ++L +A+V+TPRKVVLSG L QNH
Sbjct: 466 TIVCDDTTDSLS--CQEILLKVPSILILDEGHTPRNEDTNLLQSLAQVQTPRKVVLSGTLYQNH 527
BLAST of Cmt036310.1 vs. Araport11
Match: | (Symbols: CHR35, DMS1, DRD1 | DEFECTIVE IN MERISTEM SILENCING 1, DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1 | chr2:7097403-7101182 FORWARD LENGTH=891) HSP 1 Score: 78.1814 bits (191), Expect = 2.421e-18 Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 0 Query: 22 TTICDAETSKISAPCQEIPLKQPSIPILDEGYTPRNEKADVLLFVAKVRTPRKVVLSGKLCQNH 85
T +CD T +S CQEI LK PSI ILDEG+TPRNE ++L +A+V+TPRKVVLSG L QNH
Sbjct: 469 TIVCDDTTDSLS--CQEILLKVPSILILDEGHTPRNEDTNLLQSLAQVQTPRKVVLSGTLYQNH 530
BLAST of Cmt036310.1 vs. Araport11
Match: | (Symbols: CHR34 | chromatin remodeling 34 | chr2:9179622-9182011 REVERSE LENGTH=725) HSP 1 Score: 57.3806 bits (137), Expect = 4.923e-11 Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 0 Query: 24 ICDAETSKISAPCQEIPLKQPSIPILDEGYTPRNEKADVLLFVAKVRTPRKVVLSGKLCQNH 85
ICD S C+ I L++P++ ILDEG+T RN++ +L +A+V+T RKVVL+G L QN+
Sbjct: 292 ICDDNFEAASEDCKLILLEKPTLLILDEGHTSRNKETYMLSSLARVKTRRKVVLTGTLFQNN 353
BLAST of Cmt036310.1 vs. Araport11
Match: | (Symbols: CHR34 | chromatin remodeling 34 | chr2:9179622-9182356 REVERSE LENGTH=816) HSP 1 Score: 56.9954 bits (136), Expect = 6.380e-11 Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 0 Query: 24 ICDAETSKISAPCQEIPLKQPSIPILDEGYTPRNEKADVLLFVAKVRTPRKVVLSGKLCQNH 85
ICD S C+ I L++P++ ILDEG+T RN++ +L +A+V+T RKVVL+G L QN+
Sbjct: 383 ICDDNFEAASEDCKLILLEKPTLLILDEGHTSRNKETYMLSSLARVKTRRKVVLTGTLFQNN 444
BLAST of Cmt036310.1 vs. Araport11
Match: | (Symbols: CHR34 | chromatin remodeling 34 | chr2:9179622-9182785 REVERSE LENGTH=823) HSP 1 Score: 56.6102 bits (135), Expect = 7.462e-11 Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 0 Query: 24 ICDAETSKISAPCQEIPLKQPSIPILDEGYTPRNEKADVLLFVAKVRTPRKVVLSGKLCQNH 85
ICD S C+ I L++P++ ILDEG+T RN++ +L +A+V+T RKVVL+G L QN+
Sbjct: 390 ICDDNFEAASEDCKLILLEKPTLLILDEGHTSRNKETYMLSSLARVKTRRKVVLTGTLFQNN 451
BLAST of Cmt036310.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:13276082-13277155 FORWARD LENGTH=327) HSP 1 Score: 54.6842 bits (130), Expect = 3.284e-10 Identity = 30/85 (35.29%), Postives = 48/85 (56.47%), Query Frame = 0 Query: 1 VKRSNRTYLSDFRGAKESGLRTTICDAETSKISAPCQEIPLKQPSIPILDEGYTPRNEKADVLLFVAKVRTPRKVVLSGKLCQNH 85
+KR +T+ F GAK+ + D ++ S C++I L S+ + D G PRNE L V++++TP KV+L+G L QN+
Sbjct: 90 LKRWIKTWSIIFLGAKQ--FSNIVSDNSGAEASDSCRDILLNILSVVVFDRGTDPRNEMMSFLKVVSRIKTPHKVLLTGSLYQNN 172
BLAST of Cmt036310.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:13233832-13240154 FORWARD LENGTH=474) HSP 1 Score: 50.8322 bits (120), Expect = 9.820e-9 Identity = 29/85 (34.12%), Postives = 47/85 (55.29%), Query Frame = 0 Query: 1 VKRSNRTYLSDFRGAKESGLRTTICDAETSKISAPCQEIPLKQPSIPILDEGYTPRNEKADVLLFVAKVRTPRKVVLSGKLCQNH 85
+KR +T F GAK+ + D ++ S C++I L S+ + D G PRNE L V++++TP KV+L+G L +N+
Sbjct: 377 LKRWIKTRSIIFLGAKQ--FSNIVSDNSGAEASDSCRDILLNILSVVVFDRGTDPRNEMMCFLKVVSRIKTPHKVLLTGSLYKNN 459
BLAST of Cmt036310.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:12875071-12877422 FORWARD LENGTH=393) HSP 1 Score: 50.0618 bits (118), Expect = 1.736e-8 Identity = 28/85 (32.94%), Postives = 43/85 (50.59%), Query Frame = 0 Query: 3 RSNRTYLSDFRGAKESG--LRTTICDAETSKISAPCQEIPLKQPSIPILDEGYTPRNEKADVLLFVAKVRTPRKVVLSGKLCQNH 85
+ N L DF K S + D ++ S C++I L S+ + G PRNE L V++++TP KV+L+G L QN+
Sbjct: 269 KVNDLVLLDFYSTKASAKQFSNIVSDNSGAEASDSCRDILLNILSVVVFGRGTDPRNEMMSFLKVVSRIKTPHKVLLTGSLYQNN 353 The following BLAST results are available for this feature:
BLAST of Cmt036310.1 vs. ExPASy TrEMBL
Analysis Date: 2024-02-08 (Blastp of Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of Cmt036310.1 vs. ExPASy Swiss-Prot
Analysis Date: 2024-02-08 (Blastp of Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) v1.0 proteins vs UniProt Swissprot) Total hits: 1 Position : 0 Zoom : x 1
BLAST of Cmt036310.1 vs. Araport11
Analysis Date: 2024-02-08 (Blastp of Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) v1.0 proteins vs Araport11) Total hits: 8 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) v1.0 proteins
Date Performed: 2024-02-08 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cmt036310.1-HZY-T_v1 ID=Cmt036310.1-HZY-T_v1; Name=Cmt036310.1; organism=Citrus maxima; type=mRNA; length=255bpback to top protein sequence of Cmt036310.1-HZY-T_v1 >Cmt036310.1-HZY-T_v1 ID=Cmt036310.1-HZY-T_v1; Name=Cmt036310.1-HZY-T_v1; organism=Citrus maxima; type=polypeptide; length=85bpback to top mRNA from alignment at chr8:6322145..6322399+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=255bp; location=Sequence derived from: chr8:6322145..6322399+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr8:6322145..6322399+ >Cmt036310.1-HZY-T_v1 ID=Cmt036310.1-HZY-T_v1; Name=Cmt036310.1; organism=Citrus maxima; type=CDS; length=255bp; location=Sequence derived from: chr8:6322145..6322399+ (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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