Cmt046800.1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Cmt046800.1 vs. ExPASy TrEMBL
Match: V4SKH2|V4SKH2_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029202mg PE=4 SV=1) HSP 1 Score: 461.07 bits (1185), Expect = 9.335e-164 Identity = 229/232 (98.71%), Postives = 229/232 (98.71%), Query Frame = 0 Query: 1 MASFRSNQIGRCSKAQASLSKILRTITSVKSPPLPRFDIDLNLSLVDAFWESDVDGESENGNLDACSFVGKQIDSDSSGNSGEKMKEGSGSCSDITTVLHDVAEEESNKGDTETKPLKEQNDKGGGGNGGDCFGLLIAAAELISSTEAESSPSRDKEATTTREKATEERETSNAGESPGRIIREMKSRDTSASALPVVRSKRGRSQVLPYRYRDSVLLLEPPSKRRREPKTK 232 MASFRSNQIGRCSKAQASLSKILRTITSVKSPPLPRFDIDLNLSLVDAFWESDVD ESENGNLDACSFVGKQIDSDSSGNSGEKMKEGSGSCSDITTVLHDVAEEESNK DTETKPLKEQNDKGGGGNGGDCFGLLIAAAELISSTEAESSPSRDKEATTTREKATEERET NAGESPGRIIREMKSRDTSASALPVVRSKRGRSQVLPYRYRDSVLLLEPPSKRRREPKTK Sbjct: 1 MASFRSNQIGRCSKAQASLSKILRTITSVKSPPLPRFDIDLNLSLVDAFWESDVDSESENGNLDACSFVGKQIDSDSSGNSGEKMKEGSGSCSDITTVLHDVAEEESNKEDTETKPLKEQNDKGGGGNGGDCFGLLIAAAELISSTEAESSPSRDKEATTTREKATEERETPNAGESPGRIIREMKSRDTSASALPVVRSKRGRSQVLPYRYRDSVLLLEPPSKRRREPKTK 232
BLAST of Cmt046800.1 vs. ExPASy TrEMBL
Match: A0A2H5Q5E5|A0A2H5Q5E5_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_197080 PE=4 SV=1) HSP 1 Score: 459.144 bits (1180), Expect = 5.643e-163 Identity = 228/232 (98.28%), Postives = 230/232 (99.14%), Query Frame = 0 Query: 1 MASFRSNQIGRCSKAQASLSKILRTITSVKSPPLPRFDIDLNLSLVDAFWESDVDGESENGNLDACSFVGKQIDSDSSGNSGEKMKEGSGSCSDITTVLHDVAEEESNKGDTETKPLKEQNDKGGGGNGGDCFGLLIAAAELISSTEAESSPSRDKEATTTREKATEERETSNAGESPGRIIREMKSRDTSASALPVVRSKRGRSQVLPYRYRDSVLLLEPPSKRRREPKTK 232 MASFRSNQIGRCSKAQASLSKILRTITSVKSPPLPRFDIDLNLSLVDAFWESDVDGESENGNLDACSFVGKQI+SDSSGNS EKMKEGSGSCSDITTVLHDVAEEESNK DTETKPLKEQNDKGGGGNGGDCFGLLIAAAELISSTEAESSPSRDKEATTTREKATEERETSNAGESPGRIIREMKSRDT+ASALPVVRSKRGRSQVLPYRYRDSVLLLEPPSKRRREPKTK Sbjct: 1 MASFRSNQIGRCSKAQASLSKILRTITSVKSPPLPRFDIDLNLSLVDAFWESDVDGESENGNLDACSFVGKQIESDSSGNSREKMKEGSGSCSDITTVLHDVAEEESNKEDTETKPLKEQNDKGGGGNGGDCFGLLIAAAELISSTEAESSPSRDKEATTTREKATEERETSNAGESPGRIIREMKSRDTAASALPVVRSKRGRSQVLPYRYRDSVLLLEPPSKRRREPKTK 232
BLAST of Cmt046800.1 vs. ExPASy TrEMBL
Match: A0A067E3M5|A0A067E3M5_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g026432mg PE=4 SV=1) HSP 1 Score: 442.965 bits (1138), Expect = 2.162e-156 Identity = 225/238 (94.54%), Postives = 228/238 (95.80%), Query Frame = 0 Query: 1 MASFRSNQIGRCSKAQASLSKILRTITSVKSPPLPRFDIDLNLSLVDAFWESDVDGESENGNLDACSFVGKQIDSDSSGNSGEKMKEGSG------SCSDITTVLHDVAEEESNKGDTETKPLKEQNDKGGGGNGGDCFGLLIAAAELISSTEAESSPSRDKEATTTREKATEERETSNAGESPGRIIREMKSRDTSASALPVVRSKRGRSQVLPYRYRDSVLLLEPPSKRRREPKTK 232 MASFRSNQIGRCSKAQASLSKILRTITSVKSPPLPRFDIDLNLSLVDAFWESDVD ESENGNLDACSFVGKQI+SDSSGNS EKMKEGSG SCSDITTVL++VAEEESNK DTETKPLKEQNDKGGGGNGGDCFGLLIAAAELISSTEAESSPS DKEATTTREKATEERETSNAGESPGRIIREMKSRDTSASALPVVRSKRGRSQVLPYRYRDSVLLLEPPSKRRREPKTK Sbjct: 1 MASFRSNQIGRCSKAQASLSKILRTITSVKSPPLPRFDIDLNLSLVDAFWESDVDSESENGNLDACSFVGKQIESDSSGNSREKMKEGSGLGSGSGSCSDITTVLNEVAEEESNKEDTETKPLKEQNDKGGGGNGGDCFGLLIAAAELISSTEAESSPSGDKEATTTREKATEERETSNAGESPGRIIREMKSRDTSASALPVVRSKRGRSQVLPYRYRDSVLLLEPPSKRRREPKTK 238
BLAST of Cmt046800.1 vs. ExPASy TrEMBL
Match: A0A5C7IWK8|A0A5C7IWK8_9ROSI (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_002269 PE=4 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 7.993e-26 Identity = 92/238 (38.66%), Postives = 114/238 (47.90%), Query Frame = 0 Query: 12 CSKAQASLSKILRTITSVKSPPLPR----------------FDIDLNLSLVDAFWESDVDGESENGNLDACSFVGKQIDSDSSGNSGEKMKEGSGSCSDITTVLHDVAEEESNKGDTETKPLKEQNDKGGGGNGGDC-FGLLIAAAELISSTEAESSPSRDKEATTTREKATEERETSNAGESPGRIIREMKSRDTSASALPVVRSKRGRSQVLPYRYRDSVLLLEPPSKRRREPKTK 232 CSKAQA L KIL I+S++ PP+ FD+DLN LV FWES + ENG+L ACSFV EK EGS SDI + D EEE + G +T P ++ G DC GLLIAAAELISS + + D E ++ ++ +TS A VVRSKRGR V+P+RYRDSVLL EP K + K K Sbjct: 15 CSKAQACLKKILHVISSIEPPPVKNPSSKSEVGEFCCGKKGFDVDLNQGLVGPFWES-TESLVENGDLSACSFVC------KKEEEEEKTAEGS---SDIINSVVDSVEEEEDHGVVKTVPFSLDQER-----GNDCRLGLLIAAAELISSGDKQVMSHDDDE----KKWKVDDEDTSVA----------------------VVRSKRGR--VVPHRYRDSVLLEEPCRKPLKTTKRK 209
BLAST of Cmt046800.1 vs. ExPASy TrEMBL
Match: A0A660KU56|A0A660KU56_9ROSI (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_010082 PE=4 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 2.550e-18 Identity = 86/245 (35.10%), Postives = 119/245 (48.57%), Query Frame = 0 Query: 12 CSKAQASLSKILRTITSVKSPPLPRFD-------IDLNLSLVDAFWESDVDGESENGNLDACSFVGKQIDSDSSGNSGEKM----KEGSGSC---SDITTVLHDVAEE---------ESNKGDTETKPLKEQN---------DKGGGGNGGDCFGLLIAAAELISST----EAESS--PSRDKE-ATTTREKATEERETSNAGESPGRIIREMKSRDTSASALPVVRSKRGRSQVLPYRYRDSVL 217 CSKAQ L+KIL I+S+ P+ + +DLNL L + + ++ENGNL ACSFVGK +SDS+ S + K G C + D A+E ES++ D E + +KG D GLL+ AA+LIS EA+S PS++KE ++TR +++ + S ++ E D PVVRSKRGR+QVLP RYRDSVL Sbjct: 20 CSKAQMCLNKILSIISSIPPYETPKMNGNNRGVGVDLNLRLGPFVGAQESESQAENGNLSACSFVGKAAESDSAAESTGVLPALEKSSEGECDPKEKPAEAVADKAQEVSEITNQRVESSEIDEEETKKLVEEEEEVKTSAFEKGRENKSNDYLGLLVQAAKLISGNFGDDEADSGEPPSKEKELISSTRNESSSKSSGSKRKKNKKSWRVEDWLGDVEEDTSPVVRSKRGRTQVLPTRYRDSVL 264
BLAST of Cmt046800.1 vs. ExPASy TrEMBL
Match: A0A1R3J5W7|A0A1R3J5W7_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_19296 PE=4 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.101e-16 Identity = 92/257 (35.80%), Postives = 125/257 (48.64%), Query Frame = 0 Query: 1 MAS-FRSNQIGR--------CSKAQASLSKILRTITSVKSPPLPR------FDIDLNLSLVDAFWESDVDGESENGNLDACSFVGKQIDSDSSGNSGEKMKEGSGSCSDITT-VLHDVAE----EESNKGDTETKPLKEQNDKGGGGNGGDCFGLLIAAAELISSTEAESSPSRDKEATTTREKATEERETSNAGESPGRIIREMKSRDTSASAL-----------PVVRSKRGRSQVLPYRYRDSVLLLEPPSKRR 226 MAS + +NQ+ R CSKAQA L KILRTI+++ SPP P FDIDLNL L + D E ++ +L SFVGK D + E+++E +G+ + T DV E +E G+ +T D LLI AAE+IS RD A +EK E ++ + + E+++ D S + PVVRSKRGRSQVLP+R+RDSV LEP K+R Sbjct: 1 MASIYCNNQVIRDSSCYGRSCSKAQACLQKILRTISTIPSPPNPNPFEKRGFDIDLNLRL-GSCLNDDESTEDKSESLAENSFVGKNPDVE------EEIEEKTGTATITATDASSDVTELQKGDEFKSGEVKT-----------AAAFNDSLDLLIEAAEMISE--------RDYGANEEKEKEKEVEKSGGSSST-----MEIRNNDKDNSVVNVVFGEFEDISPVVRSKRGRSQVLPHRFRDSV--LEPLKKQR 224
BLAST of Cmt046800.1 vs. ExPASy TrEMBL
Match: A0A7J9C9M4|A0A7J9C9M4_GOSGO (HhH-GPD base excision DNA repair family protein OS=Gossypium gossypioides OX=34282 GN=Gogos_007734 PE=4 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.321e-16 Identity = 85/243 (34.98%), Postives = 113/243 (46.50%), Query Frame = 0 Query: 4 FRSNQIGR-CSKAQASLSKILRTITSVKSP------PLPR--FDIDLNLSLVDAFWESDVDGESENGNLDACSFVGKQIDSDSSGNSGEKMKEGSGSCSDITTVLHDVAEEESNKGDTETKPLKEQNDKGGGGNGGDCFGLLIAAAELISSTEAESSPSRDKEATTTREKATEERETSNAGESPGRIIREMKSRDTSASAL------------PVVRSKRGRSQVLPYRYRDSVLLLEPPSKR 225 F + + GR CSKAQA L KIL I+S+ P P + FDIDLNL L +F + D + E ++ SF + EK G + +D+++ + D+ + E K TE + K D LLI AAE+IS+ RD EK E E +G GR E + +D S + + PVVRSKRGRSQVLP R+RDSV LEP KR Sbjct: 15 FTNARHGRSCSKAQACLEKILHLISSIPPPCEINPNPFEKRGFDIDLNLRL-GSFVDDDDESEEKSDCFAENSF------------NEEKTGTGEATATDVSSDVTDIQKSEEFKSGTEGEV------KASAAFFHDSLDLLIEAAEMISA--------RD---IYLNEKKKEVEEVDKSGGGDGRESME-RVKDYSVNVVEEGLEEFEDIASPVVRSKRGRSQVLPLRFRDSV--LEPWKKR 224
BLAST of Cmt046800.1 vs. ExPASy TrEMBL
Match: A0A6A3B6M5|A0A6A3B6M5_HIBSY (Putative HhH-GPD base excision DNA repair family protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110294pilonHSYRG00009 PE=4 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 4.909e-16 Identity = 77/234 (32.91%), Postives = 113/234 (48.29%), Query Frame = 0 Query: 2 ASFRSNQIGR-CSKAQASLSKILRTITSVKSPP--LPR---FDIDLNLSLVDAFWESDVDGESENGNLDACSFVGKQIDSDSSGNSGEKMKEGSGSCSDITTVLHDVAEEESNKGDTETKPLKEQNDKGGGGNGGDCFGLLIAAAELISSTEAESSPSRDKEATTTREKATEERETSNAGESPGRIIREMKSRDTSASALPVVRSKRGRSQVLPYRYRDSVLLLEPPSKRRREP 229 + FR+ G+ CSKAQA L+KIL I+++ P +P+ FDIDLNL L +F + + +G+SE+ L SFVG+ D D + E+++E + + +D+++ DV E +++ K D LLI AA++IS R+ E++ + PVVRSKRGR QVLP R+RDSV LEP KR R P Sbjct: 13 SCFRNANYGKSCSKAQACLAKILHLISTIPPPCENIPKNRGFDIDLNLRL-GSFLDGESEGKSES--LAENSFVGENPDGD---DEEEEIQEKTATATDVSS---DVTE------------MQKSEVKTAATRFNDSLDLLIEAAQMISG----------------RDYCVSEKDEVS----------------------PVVRSKRGRCQVLPQRFRDSV--LEPWKKRPRRP 185
BLAST of Cmt046800.1 vs. ExPASy TrEMBL
Match: A0A5D2US36|A0A5D2US36_GOSMU (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D05G091100v1 PE=4 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.414e-15 Identity = 77/231 (33.33%), Postives = 110/231 (47.62%), Query Frame = 0 Query: 4 FRSNQIGR-CSKAQASLSKILRTITSVKSP------PLPR--FDIDLNLSLVDAFWESDVDGESENGNLDACSFVGKQIDSDSSGNSGEKMKEGSGSCSDITTVLHDVAEEESNKGDTETKPLKEQNDKGGGGNGGDCFGLLIAAAELISSTEAESSPSRDKEATTTREKATEERETSNAGESPGRIIREMKSRDTSASALPVVRSKRGRSQVLPYRYRDSVLLLEPPSKR 225 F + + GR CSKAQA L KIL I+S+ P P + FDIDLNL L +F + D + E ++ SF + EK G + +D+++ + D+ + E K TE + K D LLI AAE+IS+ + + + + + + RE+ + + E + A PVVRSKRGRSQVLP R+RDSV LEP KR Sbjct: 15 FTNARHGRSCSKAQACLEKILHLISSIPPPCEINPNPFKKRGFDIDLNLRL-GSFVDDDDESEEKSDCFAENSF------------NEEKTDTGEATATDVSSDVTDIQKSEEFKSGTEGEV------KASAAFFHDSLDLLIEAAEMISARDIYLNEKKKEVEEVEKSGVGDGRESMERVKDYSVNVVEEGLEEFEDIASPVVRSKRGRSQVLPLRFRDSV--LEPWKKR 224
BLAST of Cmt046800.1 vs. ExPASy TrEMBL
Match: A0A7J8PZ38|A0A7J8PZ38_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=Gorai_011418 PE=4 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.816e-15 Identity = 77/231 (33.33%), Postives = 110/231 (47.62%), Query Frame = 0 Query: 4 FRSNQIGR-CSKAQASLSKILRTITSVKSP------PLPR--FDIDLNLSLVDAFWESDVDGESENGNLDACSFVGKQIDSDSSGNSGEKMKEGSGSCSDITTVLHDVAEEESNKGDTETKPLKEQNDKGGGGNGGDCFGLLIAAAELISSTEAESSPSRDKEATTTREKATEERETSNAGESPGRIIREMKSRDTSASALPVVRSKRGRSQVLPYRYRDSVLLLEPPSKR 225 F + + GR CSKAQA L KIL I+S+ P P + FDIDLNL L +F + D + E ++ SF + EK G + +D+++ + D+ + E K TE + K D LLI AAE+IS+ + + + + + + RE+ + + E + A PVVRSKRGRSQVLP R+RDSV LEP KR Sbjct: 15 FTNARHGRSCSKAQACLEKILHLISSIPPPCEINPNPFKKRGFDIDLNLRL-GSFVDDDDESEEKSDCFAENSF------------NEEKTGTGEATATDVSSDVTDIQKSEEFKSGTEGEV------KASAAFFHDSLDLLIEAAEMISARDIYLNEKKKEVEEVEKSGVGDGRESMERVKDDSVNVVEEGLEEFEDIASPVVRSKRGRSQVLPLRFRDSV--LEPWKKR 224 The following BLAST results are available for this feature:
BLAST of Cmt046800.1 vs. ExPASy TrEMBL
Analysis Date: 2024-02-08 (Blastp of Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of Cmt046800.1 vs. ExPASy TrEMBL
Analysis Date: 2024-02-08 (Blastp of Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of Cmt046800.1 vs. ExPASy TrEMBL
Analysis Date: 2024-02-08 (Blastp of Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cmt046800.1-HZY-T_v1 ID=Cmt046800.1-HZY-T_v1; Name=Cmt046800.1; organism=Citrus maxima; type=mRNA; length=699bpback to top protein sequence of Cmt046800.1-HZY-T_v1 >Cmt046800.1-HZY-T_v1 ID=Cmt046800.1-HZY-T_v1; Name=Cmt046800.1-HZY-T_v1; organism=Citrus maxima; type=polypeptide; length=233bpback to top mRNA from alignment at chr8:30574215..30575609+ Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1395bp; location=Sequence derived from: chr8:30574215..30575609+ (Citrus maximaback to top Coding sequence (CDS) from alignment at chr8:30574215..30575609+ >Cmt046800.1-HZY-T_v1 ID=Cmt046800.1-HZY-T_v1; Name=Cmt046800.1; organism=Citrus maxima; type=CDS; length=699bp; location=Sequence derived from: chr8:30574215..30575609+ (Citrus maximaback to top |