Cmt046880.1
|
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Cmt046880.1 vs. ExPASy TrEMBL
Match: A0A8X9ACL5|A0A8X9ACL5_SALSN (Splicing factor U2AF 35 kDa subunit OS=Salvia splendens OX=180675 GN=SASPL_102190 PE=4 SV=1) HSP 1 Score: 362.844 bits (930), Expect = 8.522e-120 Identity = 196/333 (58.86%), Postives = 230/333 (69.07%), Query Frame = 0 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPS------------RLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISSY-LVDIDEDIAVAEAEAEVLTGIAAMKTALTVGMVEGMMTGTSIMKVEAGGTGAQALATEEGEVEALVEDGIAALSGKAVRRDVPKLSSGTGKG---NSKKKLIKEIQMVATMTRESTMMGLCKMVADSIVISCNQSKE-AMNTDSFSSIRFRYP 316
MAEHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLHTKPS R DMITPGVD QG P+DP+KIQ HFEDFYEDLF+EL+KYG+I+SLN+CDNLADHMVGNVYVQFREE+QA AL++L GR Y GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMHLK+ISS ++ED+ EAEA VL I AM++ + +G EG++ ++++ E AQ E EV L E A KAVRR+ PKL+SG KG N K +I + +ATM TM + IS +QSKE + T F ++ YP
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSTSPTLLLSNMYQRPDMITPGVDPQGQPIDPKKIQSHFEDFYEDLFQELSKYGDIQSLNICDNLADHMVGNVYVQFREEDQAQNALQNLVGRSYEGRPIIADFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISSNCFGRVEEDMTAVEAEAVVL-AIVAMRSVMALG--EGVVIAVTMIEAEDLEAEAQVEGVAEAEV--LGEGETGAQLEKAVRREGPKLNSGIRKGRILNLLKIVIMKKPRMATMAWNITMGDRVPIT----TISNHQSKEMEIMTSKFYAVNLGYP 324
BLAST of Cmt046880.1 vs. ExPASy TrEMBL
Match: A0A438JSP6|A0A438JSP6_VITVI (Splicing factor U2af small subunit A OS=Vitis vinifera OX=29760 GN=U2AF35A PE=4 SV=1) HSP 1 Score: 361.688 bits (927), Expect = 1.813e-118 Identity = 213/395 (53.92%), Postives = 251/395 (63.54%), Query Frame = 0 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPS------------RLDMITPGVDAQGNPLDPRKIQEHFE-DFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISSYL---------------VDIDEDIAVAEAE-----AEVLTGIAAMKTALTVGMVEGMMTGTSIMKVEA-GGTGAQALATEEGEVEALVEDGIAALSGKAVRRDVPKLSSGTGKGNSKKKLIKEIQMVATMTRESTMMGLCKMVADSIVISCNQSK--------EAMNTDSFSSIRFRYPASKEPAVFLSLLAAYDEICLQVCWCSIRCSKMVSCTC 353
MAEHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLHTKPS R DM+TPGVD QG PLDPRKIQEHFE DFYEDLFEEL+KYGEIESLN+CDNLADHMVGNVYVQFREEE AA AL++L+GRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYCNFMHLK+IS L E ++ + M + V ++E MMT + + GG A+ L E E EALVE+GI SGKAV R+ +LS+G GK N +K LI+ I +AT+T +T M L KM+ +SI+I + + E D PAS++ A +AAY +IC+Q W ++ + C
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMVTPGVDPQGQPLDPRKIQEHFEVDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENICNRGGYCNFMHLKKISRQLRRQLFGRNRRRRSRSRSRSPYRHRGHEEHPHVLMVLMVHMVHMVHVVHVALIEEMMTEIIVTMIGGVGGLEAEVLHVEGDEAEALVEEGIRVQSGKAVLREGLRLSNGIGKENRQKLLIRMI--IATVTMVTTTMTLNKMI-NSIIIHSIRRRTSSSSSSMEDTTIDPIELFGSGIPASQDRASI--FMAAYHDICIQ-AWGAVGIPEFEPDAC 389
BLAST of Cmt046880.1 vs. ExPASy TrEMBL
Match: A0A218WAG1|A0A218WAG1_PUNGR (Splicing factor U2af small subunit B-like OS=Punica granatum OX=22663 GN=CDL15_Pgr025495 PE=4 SV=1) HSP 1 Score: 358.607 bits (919), Expect = 2.875e-118 Identity = 183/308 (59.42%), Postives = 214/308 (69.48%), Query Frame = 0 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPS------------RLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISSYL------VDIDEDIAV------------AEAEAEVLTGIAAMKTALTVGMVEGMMTGTSIMKVEAGGTGAQALATEEGEVEALVEDGIAALSGKAVRRDVPKLSSGTGKGNSKKKLIKEIQMVATMTRE 278
MAEHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLHTKP+ R DM+TPGVD Q LDPRK+Q+HFEDFYEDLFEEL+KYG+IE+LN+CDN+ADHMVGNVYVQFREEE AA AL++L+GRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYCNFMHLK+IS + V + D+A+ EA VLT V EG M G + + +EA GA+AL EGE +A E G A GK + P+LS+GTGKG +K+K + + M T + +
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLLLSNMYQRPDMLTPGVDPQAQNLDPRKVQDHFEDFYEDLFEELSKYGDIENLNICDNIADHMVGNVYVQFREEEHAANALQNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRIVGESLVAVKSEYDLALWVIYCWRLDPGADRVEAGVLTDTLITDHTAPVVQAEGKMIGNAGIMIEAESLGAKALGA-EGEAQAQGEGGTGAQFGKVALSEEPRLSNGTGKGRNKQKQMVRVIMEPTRSEQ 307
BLAST of Cmt046880.1 vs. ExPASy TrEMBL
Match: A0A8X8YPR7|A0A8X8YPR7_SALSN (Splicing factor U2AF 35 kDa subunit OS=Salvia splendens OX=180675 GN=SASPL_105570 PE=4 SV=1) HSP 1 Score: 358.607 bits (919), Expect = 1.500e-117 Identity = 193/317 (60.88%), Postives = 225/317 (70.98%), Query Frame = 0 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPS------------RLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISSY-LVDIDEDIAVAEAEAEVLTGIAAMKTALTVGMVEGMMTGTSIMKVEAGGTGAQALATEEGEVEALVEDGIAALSGKAVRRDVPKLSSGTGKG---NSKKKLIKEIQMVATMTRESTMMGLCKMVADSIVISCNQSKE 301
MAEHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLHTKPS R DMITPGVD QG P+DP+KIQ HFEDFYEDLF+EL+KYG+I+SLN+CDNLADHMVGNVYVQFREE+QA AL++L GR Y GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMHLK+ISS ++ED+ EAEA VL I AM++ + +G EG++ ++ +EAG A+A E E E A KAVRR+ PKL+SG KG N K +I + +MV TM+ TM + IS +QSKE
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSTSPTLLLSNMYQRPDMITPGVDPQGQPIDPKKIQSHFEDFYEDLFQELSKYGDIQSLNICDNLADHMVGNVYVQFREEDQAQNALQNLVGRSYEGRPIIADFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISSNCFGRVEEDMTAVEAEAVVL-AIVAMRSVIALG--EGVVIAVTM--IEAGDLEAEAQVEGVAEAEVPGEGESGAQLEKAVRREGPKLNSGIRKGRIPNLLKIIIMKPRMV-TMSWNITMGDRVPITT----ISNHQSKE 307
BLAST of Cmt046880.1 vs. ExPASy TrEMBL
Match: A0A2H5QFR8|A0A2H5QFR8_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_225540 PE=4 SV=1) HSP 1 Score: 346.665 bits (888), Expect = 8.143e-114 Identity = 164/180 (91.11%), Postives = 164/180 (91.11%), Query Frame = 0 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPS------------RLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISSYL 168
MAEHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLHTKPS RLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRG YCNFMHLKRIS L
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSVSPTLLLSNMYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGEYCNFMHLKRISRDL 180
BLAST of Cmt046880.1 vs. ExPASy TrEMBL
Match: A0A103XHB3|A0A103XHB3_CYNCS (Nucleotide-binding, alpha-beta plait OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_007276 PE=4 SV=1) HSP 1 Score: 335.88 bits (860), Expect = 1.571e-109 Identity = 157/180 (87.22%), Postives = 162/180 (90.00%), Query Frame = 0 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPS------------RLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISSYL 168
MAEHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLHTKPS R DMITPGVDAQGNP+DPRKIQ+HFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEE AA+ALK+LSGR+YAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRI L
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDAQGNPIDPRKIQDHFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEEYAAKALKNLSGRYYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRIGREL 180
BLAST of Cmt046880.1 vs. ExPASy TrEMBL
Match: A0A9J5WRJ7|A0A9J5WRJ7_SOLCO (Uncharacterized protein OS=Solanum commersonii OX=4109 GN=H5410_058067 PE=4 SV=1) HSP 1 Score: 334.339 bits (856), Expect = 4.556e-109 Identity = 156/180 (86.67%), Postives = 161/180 (89.44%), Query Frame = 0 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPS------------RLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISSYL 168
MAEHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLHTKPS R D ITPGVDAQGNP+DPRKIQEHFEDFYEDLFEELNKYGEIESLN+CDNLADHMVGNVYVQFREEEQAA ALK+L+GRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYCNFMHLK+IS L
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDSITPGVDAQGNPIDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAANALKNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
BLAST of Cmt046880.1 vs. ExPASy TrEMBL
Match: M1CIM9|M1CIM9_SOLTU (Splicing factor U2af small subunit A OS=Solanum tuberosum OX=4113 GN=102590524 PE=4 SV=1) HSP 1 Score: 333.954 bits (855), Expect = 4.863e-109 Identity = 156/180 (86.67%), Postives = 161/180 (89.44%), Query Frame = 0 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPS------------RLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISSYL 168
MAEHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLHTKPS R D ITPGVDAQGNP+DPRKIQEHFEDFYEDLFEELNKYGEIESLN+CDNLADHMVGNVYVQFREEEQAA ALK+L+GRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYCNFMHLK+IS L
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDSITPGVDAQGNPIDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAANALKNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
BLAST of Cmt046880.1 vs. ExPASy TrEMBL
Match: A0A6N2AWZ0|A0A6N2AWZ0_SOLCI (Uncharacterized protein OS=Solanum chilense OX=4083 GN=EJD97_022893 PE=4 SV=1) HSP 1 Score: 333.954 bits (855), Expect = 5.305e-109 Identity = 156/180 (86.67%), Postives = 161/180 (89.44%), Query Frame = 0 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPS------------RLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISSYL 168
MAEHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLHTKPS R D ITPGVDAQGNP+DPRKIQEHFEDFYEDLFEELNKYGEIESLN+CDNLADHMVGNVYVQFREEEQAA ALK+L+GRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYCNFMHLK+IS L
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDSITPGVDAQGNPIDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAANALKNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
BLAST of Cmt046880.1 vs. ExPASy TrEMBL
Match: A0A5J4ZDD8|A0A5J4ZDD8_9ASTE (C3H1-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_016829 PE=4 SV=1) HSP 1 Score: 335.495 bits (859), Expect = 6.073e-109 Identity = 186/324 (57.41%), Postives = 206/324 (63.58%), Query Frame = 0 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPS------------RLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISSYLVDIDEDIAVAEAEAEVLTGIAAMKTALTVGMVEGMMTGTSIMKVEAGGTGAQALATEEGEVEALVEDGIAALSGKAVRRDVPKLSSGTGKGNSKKKLIKEIQMVATM------TRESTMMGLCKMVADSIVISCNQSKEAMNTD 306
MAEHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLHTKPS R DMITPGVD QG PLDPRKIQ+HFEDFYEDLFEEL+KYGEIESLN+CDNLADHMVGNVYVQFREEE AA AL++LSGRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYCNFMHLK+IS L L G + + + S + GG G Q GKA R+ +LS+G GKGN + L + I + TM T E+++M L I S +S E M TD
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQPLDPRKIQDHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENICNRGGYCNFMHLKKISREL-------------RRQLFGRNRRRRSRSRSQSP--HRHRSYEERSHGGWGVQL--------------------GKAALREGQRLSNGIGKGNRQNLLARMILVTTTMIAIAFCTMENSIMTL-------INSSTGRSMEVMTTD 282
BLAST of Cmt046880.1 vs. ExPASy Swiss-Prot
Match: U2AFA_ORYSJ (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35A PE=2 SV=1) HSP 1 Score: 307.76 bits (787), Expect = 1.146e-101 Identity = 141/180 (78.33%), Postives = 157/180 (87.22%), Query Frame = 0 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPS------------RLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISSYL 168
MAEHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLH KPS R DMITPG+DAQGNP+DP KIQ FEDFYED+FEEL+KYGEIESL+VCDN ADHM+GNVYVQFREE+QAARAL++L+GR+Y+GRPIIV+FSPV+DFREATCRQYEEN+CNRGGYCNFMH+K I L
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITPGIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREEDQAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEIGRDL 180
BLAST of Cmt046880.1 vs. ExPASy Swiss-Prot
Match: U2AFB_ORYSJ (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35B PE=2 SV=1) HSP 1 Score: 302.368 bits (773), Expect = 2.775e-99 Identity = 136/180 (75.56%), Postives = 155/180 (86.11%), Query Frame = 0 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPS------------RLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISSYL 168
MAEHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLH +P+ R DMITPGVDAQG P+DP K+QEHFEDFYED++EEL+K+GE+E+LNVCDNLADHM+GNVYVQFREEEQA A +L GRFY+GRPIIV++SPVTDFREATCRQ+EEN+CNRGGYCNFMH+K+I L
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEEQAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGREL 180
BLAST of Cmt046880.1 vs. ExPASy Swiss-Prot
Match: U2AFA_ARATH (Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A PE=1 SV=1) HSP 1 Score: 298.901 bits (764), Expect = 5.048e-98 Identity = 143/180 (79.44%), Postives = 156/180 (86.67%), Query Frame = 0 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPS------------RLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISSYL 168
MAEHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLH +P+ R DMITPGVDAQG PLDPRKIQEHFEDF+EDLFEEL K+GEIESLN+CDNLADHM+GNVYVQF+EE+QAA AL++L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K +S L
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180
BLAST of Cmt046880.1 vs. ExPASy Swiss-Prot
Match: U2AFB_ARATH (Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B PE=1 SV=1) HSP 1 Score: 295.819 bits (756), Expect = 4.422e-97 Identity = 140/180 (77.78%), Postives = 155/180 (86.11%), Query Frame = 0 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPS------------RLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISSYL 168
MAEHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLH +P+ R DMITPGVD QG PLDP KIQ+HFEDFYED+FEELNK+GE+ESLNVCDNLADHM+GNVYV F+EE+ AA AL++L GRFY+GRPII DFSPVTDFREATCRQYEEN+CNRGGYCNFMH+K+IS L
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180
BLAST of Cmt046880.1 vs. ExPASy Swiss-Prot
Match: U2AF1_BOVIN (Splicing factor U2AF 35 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1 PE=2 SV=1) HSP 1 Score: 211.46 bits (537), Expect = 7.626e-65 Identity = 102/181 (56.35%), Postives = 128/181 (70.72%), Query Frame = 0 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSRLDMI------------TPGVDAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISSYL 168
MAE+LASIFGTEKD+VNC FYFKIGACR GDRCSRLH KP+ I + D + ++QEH+++F+E++F E+ KYGE+E +NVCDNL DH+VGNVYV+FR EE A +A+ L+ R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK IS L
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISREL 181
BLAST of Cmt046880.1 vs. ExPASy Swiss-Prot
Match: U2AF1_MOUSE (Splicing factor U2AF 35 kDa subunit OS=Mus musculus OX=10090 GN=U2af1 PE=1 SV=4) HSP 1 Score: 211.46 bits (537), Expect = 8.122e-65 Identity = 102/181 (56.35%), Postives = 128/181 (70.72%), Query Frame = 0 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSRLDMI------------TPGVDAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISSYL 168
MAE+LASIFGTEKD+VNC FYFKIGACR GDRCSRLH KP+ I + D + ++QEH+++F+E++F E+ KYGE+E +NVCDNL DH+VGNVYV+FR EE A +A+ L+ R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK IS L
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISREL 181
BLAST of Cmt046880.1 vs. ExPASy Swiss-Prot
Match: U2AF1_HUMAN (Splicing factor U2AF 35 kDa subunit OS=Homo sapiens OX=9606 GN=U2AF1 PE=1 SV=3) HSP 1 Score: 211.46 bits (537), Expect = 8.381e-65 Identity = 102/181 (56.35%), Postives = 128/181 (70.72%), Query Frame = 0 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSRLDMI------------TPGVDAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISSYL 168
MAE+LASIFGTEKD+VNC FYFKIGACR GDRCSRLH KP+ I + D + ++QEH+++F+E++F E+ KYGE+E +NVCDNL DH+VGNVYV+FR EE A +A+ L+ R++ G+PI + SPVTDFREA CRQYE C RGG+CNFMHLK IS L
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISREL 181
BLAST of Cmt046880.1 vs. ExPASy Swiss-Prot
Match: U2AF1_SCHPO (Splicing factor U2AF 23 kDa subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAP8A3.06 PE=1 SV=2) HSP 1 Score: 209.534 bits (532), Expect = 1.937e-64 Identity = 100/199 (50.25%), Postives = 131/199 (65.83%), Query Frame = 0 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSRLDMI-------TPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISSYLVDIDEDIAVAEAEAEVLTGIAAMK 192
MA HLASI+GTE+D+VNC FY+KIGACR G+RCSR H KP+ I P + G R++ E F+ FYED+F E +KYGE+E L VCDN+ DH+VGNVYV+F+ EE A A+ L+ R+Y+ RP+ + SPVTDFREA CRQ+E + C RGG CNFMH K+ S L+ D+ +A+ + L MK
Sbjct: 1 MASHLASIYGTEQDKVNCSFYYKIGACRHGERCSRKHVKPNFSQTILCPNMYKNPIHEPNGKKFTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQRPVYAELSPVTDFREACCRQHETSECQRGGLCNFMHAKKPSPQLL---RDLVLAQRKYLALNAAEEMK 196
BLAST of Cmt046880.1 vs. ExPASy Swiss-Prot
Match: U2AF4_BOVIN (Splicing factor U2AF 26 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1L4 PE=2 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 9.070e-64 Identity = 101/181 (55.80%), Postives = 126/181 (69.61%), Query Frame = 0 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSRLDMI------------TPGVDAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISSYL 168
MAE+LASIFGTEKD+VNC FYFKIGACR GDRCSRLH KP+ I D + ++QEH+++F+E++F EL KYGEIE +NVCDNL DH+VGNVYV+FR EE A RA+ L+ R++ G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ IS L
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVVELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRDL 181
BLAST of Cmt046880.1 vs. ExPASy Swiss-Prot
Match: U2AF4_RAT (Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus OX=10116 GN=U2af1l4 PE=2 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 1.112e-63 Identity = 101/181 (55.80%), Postives = 126/181 (69.61%), Query Frame = 0 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSRLDMI------------TPGVDAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISSYL 168
MAE+LASIFGTEKD+VNC FYFKIGACR GDRCSRLH KP+ I D + ++QEH+++F+E++F EL KYGEIE +NVCDNL DH+VGNVYV+FR EE A RA+ L+ R++ G+ + + SPVTDFRE+ CRQYE C RGG+CNFMHL+ IS L
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRNL 181
BLAST of Cmt046880.1 vs. Araport11
Match: | (Symbols: ATU2AF35A | | chr1:9615152-9616042 FORWARD LENGTH=296) HSP 1 Score: 298.901 bits (764), Expect = 5.292e-99 Identity = 143/180 (79.44%), Postives = 156/180 (86.67%), Query Frame = 0 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPS------------RLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISSYL 168
MAEHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLH +P+ R DMITPGVDAQG PLDPRKIQEHFEDF+EDLFEEL K+GEIESLN+CDNLADHM+GNVYVQF+EE+QAA AL++L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K +S L
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180
BLAST of Cmt046880.1 vs. Araport11
Match: | (Symbols: ATU2AF35B, U2AF35B | | chr5:17170445-17171296 REVERSE LENGTH=283) HSP 1 Score: 295.819 bits (756), Expect = 4.636e-98 Identity = 140/180 (77.78%), Postives = 155/180 (86.11%), Query Frame = 0 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPS------------RLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISSYL 168
MAEHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLH +P+ R DMITPGVD QG PLDP KIQ+HFEDFYED+FEELNK+GE+ESLNVCDNLADHM+GNVYV F+EE+ AA AL++L GRFY+GRPII DFSPVTDFREATCRQYEEN+CNRGGYCNFMH+K+IS L
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180
BLAST of Cmt046880.1 vs. Araport11
Match: | (Symbols: ATU2AF35B, U2AF35B | | chr5:17170445-17171296 REVERSE LENGTH=283) HSP 1 Score: 295.819 bits (756), Expect = 4.636e-98 Identity = 140/180 (77.78%), Postives = 155/180 (86.11%), Query Frame = 0 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPS------------RLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISSYL 168
MAEHLASIFGTEKDRVNCPFYFKIGACR GDRCSRLH +P+ R DMITPGVD QG PLDP KIQ+HFEDFYED+FEELNK+GE+ESLNVCDNLADHM+GNVYV F+EE+ AA AL++L GRFY+GRPII DFSPVTDFREATCRQYEEN+CNRGGYCNFMH+K+IS L
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180
BLAST of Cmt046880.1 vs. Araport11
Match: | (Symbols: ATU2AF35A | | chr1:9615302-9616042 FORWARD LENGTH=246) HSP 1 Score: 225.328 bits (573), Expect = 4.951e-71 Identity = 106/128 (82.81%), Postives = 117/128 (91.41%), Query Frame = 0 Query: 41 SRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISSYL 168
R DMITPGVDAQG PLDPRKIQEHFEDF+EDLFEEL K+GEIESLN+CDNLADHM+GNVYVQF+EE+QAA AL++L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K +S L
Sbjct: 3 QRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 130
BLAST of Cmt046880.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:3384164-3388373 REVERSE LENGTH=757) HSP 1 Score: 119.013 bits (297), Expect = 2.088e-28 Identity = 64/165 (38.79%), Postives = 101/165 (61.21%), Query Frame = 0 Query: 9 FGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSR------LDMIT-PGV---DAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEEN---TCNRGGYCNFMH 160
FGTE+D+ +CPF+ K GACR G RCSR+H P++ +M PG+ +G + + +E+FYED+ E KYGE+ + VC N + H+ GNVYV +R E A A +S++GR++AG+ + +F ++ ++ A C +Y ++ TC+RG CNF+H
Sbjct: 237 FGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPGITWEQDEGLEYTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIH 401
BLAST of Cmt046880.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:3384164-3388373 REVERSE LENGTH=748) HSP 1 Score: 118.627 bits (296), Expect = 2.414e-28 Identity = 64/165 (38.79%), Postives = 101/165 (61.21%), Query Frame = 0 Query: 9 FGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPSR------LDMIT-PGV---DAQGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNVCDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEEN---TCNRGGYCNFMH 160
FGTE+D+ +CPF+ K GACR G RCSR+H P++ +M PG+ +G + + +E+FYED+ E KYGE+ + VC N + H+ GNVYV +R E A A +S++GR++AG+ + +F ++ ++ A C +Y ++ TC+RG CNF+H
Sbjct: 228 FGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPGITWEQDEGLEYTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIH 392
BLAST of Cmt046880.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:16328221-16328448 REVERSE LENGTH=75) HSP 1 Score: 85.5001 bits (210), Expect = 2.052e-20 Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0 Query: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRLGDRCSRLHTKPS 41
M EHLASI+GTEKDRVNCPFYFKIG CR GDRCSRL+TKPS
Sbjct: 1 MVEHLASIYGTEKDRVNCPFYFKIGVCRNGDRCSRLYTKPS 41 The following BLAST results are available for this feature:
BLAST of Cmt046880.1 vs. ExPASy TrEMBL
Analysis Date: 2024-02-08 (Blastp of Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of Cmt046880.1 vs. ExPASy Swiss-Prot
Analysis Date: 2024-02-08 (Blastp of Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) v1.0 proteins vs UniProt Swissprot) Total hits: 10 Position : 0 Zoom : x 1
BLAST of Cmt046880.1 vs. Araport11
Analysis Date: 2024-02-08 (Blastp of Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) v1.0 proteins vs Araport11) Total hits: 7 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) v1.0 proteins
Date Performed: 2024-02-08 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Cmt046880.1-HZY-T_v1 ID=Cmt046880.1-HZY-T_v1; Name=Cmt046880.1; organism=Citrus maxima; type=mRNA; length=1332bpback to top protein sequence of Cmt046880.1-HZY-T_v1 >Cmt046880.1-HZY-T_v1 ID=Cmt046880.1-HZY-T_v1; Name=Cmt046880.1-HZY-T_v1; organism=Citrus maxima; type=polypeptide; length=444bpback to top mRNA from alignment at chr8:30729715..30732993- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=3279bp; location=Sequence derived from: chr8:30729715..30732993- (Citrus maximaback to top Coding sequence (CDS) from alignment at chr8:30729715..30732993- >Cmt046880.1-HZY-T_v1 ID=Cmt046880.1-HZY-T_v1; Name=Cmt046880.1; organism=Citrus maxima; type=CDS; length=1332bp; location=Sequence derived from: chr8:30729715..30732993- (Citrus maximaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|