CsN08G008710.1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CsN08G008710.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2H5Q9A0|A0A2H5Q9A0_CITUN (LITAF domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_208150 PE=4 SV=1) HSP 1 Score: 249.595 bits (636), Expect = 1.347e-83 Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0 Query: 1 MSRRGNNSTPKLELKLNLSPPRATARANNNNQAVIIDSPPNESSPNNSYSWEVVSPESSCVSSEPEEMTDAAAAIHVTTSMVLAGCPRCLMYVMLSDANPKCPKCKSTVLLDFLNEENNKKASN 124
MSRRGNNSTPKLELKLNLSPPRATARANNNNQAVIIDSPPNESSPNNSYSWEVVSPESSCVSSEPEEMTDAAAAIHVTTSMVLAGCPRCLMYVMLSDANPKCPKCKSTVLLDFLNEENNKKASN
Sbjct: 1 MSRRGNNSTPKLELKLNLSPPRATARANNNNQAVIIDSPPNESSPNNSYSWEVVSPESSCVSSEPEEMTDAAAAIHVTTSMVLAGCPRCLMYVMLSDANPKCPKCKSTVLLDFLNEENNKKASN 124
BLAST of CsN08G008710.1 vs. ExPASy TrEMBL (2024)
Match: tr|V4SJY8|V4SJY8_CITCL (LITAF domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10029587mg PE=4 SV=1) HSP 1 Score: 245.743 bits (626), Expect = 5.566e-82 Identity = 122/124 (98.39%), Postives = 122/124 (98.39%), Query Frame = 0 Query: 1 MSRRGNNSTPKLELKLNLSPPRATARANNNNQAVIIDSPPNESSPNNSYSWEVVSPESSCVSSEPEEMTDAAAAIHVTTSMVLAGCPRCLMYVMLSDANPKCPKCKSTVLLDFLNEENNKKASN 124
MSRRGNNSTPKLELKLNLSPPRATARANNNNQAVIIDSPPNESSPNNSYSWEVVSPESSCVSSEPEEMTDAAAAIHVTTSMVLAGCPRCLMYVMLSDANPKCPKCKSTVLLD LNEENNKK SN
Sbjct: 1 MSRRGNNSTPKLELKLNLSPPRATARANNNNQAVIIDSPPNESSPNNSYSWEVVSPESSCVSSEPEEMTDAAAAIHVTTSMVLAGCPRCLMYVMLSDANPKCPKCKSTVLLDLLNEENNKKTSN 124
BLAST of CsN08G008710.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A067F473|A0A067F473_CITSI (LITAF domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039815mg PE=4 SV=1) HSP 1 Score: 245.743 bits (626), Expect = 5.566e-82 Identity = 122/124 (98.39%), Postives = 122/124 (98.39%), Query Frame = 0 Query: 1 MSRRGNNSTPKLELKLNLSPPRATARANNNNQAVIIDSPPNESSPNNSYSWEVVSPESSCVSSEPEEMTDAAAAIHVTTSMVLAGCPRCLMYVMLSDANPKCPKCKSTVLLDFLNEENNKKASN 124
MSRRGNNSTPKLELKLNLSPPRATARANNNNQAVIIDSPPNESSPNNSYSWEVVSPESSCVSSEPEEMTDAAAAIHVTTSMVLAGCPRCLMYVMLSDANPKCPKCKSTVLLD LNEENNKK SN
Sbjct: 1 MSRRGNNSTPKLELKLNLSPPRATARANNNNQAVIIDSPPNESSPNNSYSWEVVSPESSCVSSEPEEMTDAAAAIHVTTSMVLAGCPRCLMYVMLSDANPKCPKCKSTVLLDLLNEENNKKTSN 124
BLAST of CsN08G008710.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A6P5ZVZ0|A0A6P5ZVZ0_DURZI (Uncharacterized protein LOC111304381 OS=Durio zibethinus OX=66656 GN=LOC111304381 PE=4 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.310e-37 Identity = 77/124 (62.10%), Postives = 86/124 (69.35%), Query Frame = 0 Query: 1 MSRRGNNSTPKLELKLNLSPPRATARANNNNQAVIIDSPPNESSPNNSYSWEVVSPESSCVSSEPEEMTDAAAAIHVTTSMVLAGCPRCLMYVMLSDANPKCPKCKSTVLLDFLNEENNKKASN 124
MSRRGN +PKLELKLNLSPPR +NQ V SPN S S +SPESSCVSSEP++ + TSMVL GCPRCLMYVMLS+ +PKCP+CKSTVLLDFLNEEN KKA N
Sbjct: 1 MSRRGN--SPKLELKLNLSPPR-------DNQQV--------GSPNTSVSSCEMSPESSCVSSEPDDTMMQYPSSPEATSMVLVGCPRCLMYVMLSEVDPKCPRCKSTVLLDFLNEENAKKARN 107
BLAST of CsN08G008710.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA39SZU7|A0AA39SZU7_ACESA (Uncharacterized protein OS=Acer saccharum OX=4024 GN=LWI29_000916 PE=4 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 6.115e-37 Identity = 79/125 (63.20%), Postives = 88/125 (70.40%), Query Frame = 0 Query: 1 MSRRGNNSTPKLELKLNLSPPRATARANNNNQAVIIDSPPNESSPNNSYS-WEVVSPESSCVSSEPEEMT-DAAAAIHVTTSMVLAGCPRCLMYVMLSDANPKCPKCKSTVLLDFLNEENNKKAS 123
MSRR N +PKLELKLNLSPPR N + Q VI SPN S S WE+ SPE SCVSSEPE+ T A++ TSMVLAGCPRCLMYVMLSD +PKCPKCKS VLLDF NE+NN K +
Sbjct: 1 MSRRSN--SPKLELKLNLSPPR-----NRDQQQVI-------QSPNGSVSSWEM-SPEGSCVSSEPEDTTMHYASSPDTATSMVLAGCPRCLMYVMLSDVDPKCPKCKSNVLLDFPNEDNNPKKT 110
BLAST of CsN08G008710.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A5C7IW75|A0A5C7IW75_9ROSI (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_002129 PE=4 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 7.695e-37 Identity = 79/125 (63.20%), Postives = 88/125 (70.40%), Query Frame = 0 Query: 1 MSRRGNNSTPKLELKLNLSPPRATARANNNNQAVIIDSPPNESSPNNSYS-WEVVSPESSCVSSEPEEMT-DAAAAIHVTTSMVLAGCPRCLMYVMLSDANPKCPKCKSTVLLDFLNEENNKKAS 123
MSRR N +PKLELKLNLSPPR N + Q VI SPN S S WE+ SPE SCVSSEPE+ T A++ TSMVLAGCPRCLMYVMLSD +PKCPKCKS VLLDF NE+NN K +
Sbjct: 1 MSRRSN--SPKLELKLNLSPPR-----NRDQQQVI-------QSPNGSVSSWEM-SPEGSCVSSEPEDTTMHYASSPDTETSMVLAGCPRCLMYVMLSDVDPKCPKCKSNVLLDFPNEDNNPKKT 110
BLAST of CsN08G008710.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A6J0ZW53|A0A6J0ZW53_9ROSI (LOW QUALITY PROTEIN: uncharacterized protein LOC110412649 OS=Herrania umbratica OX=108875 GN=LOC110412649 PE=4 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 2.409e-36 Identity = 78/125 (62.40%), Postives = 87/125 (69.60%), Query Frame = 0 Query: 1 MSRRGNNSTPKLELKLNLSPPRATARANNNNQAVIIDSPPNESSPNNSYS-WEVVSPESSCVSSEPEEMTDAAAAIHVTTSMVLAGCPRCLMYVMLSDANPKCPKCKSTVLLDFLNEENNKKASN 124
MSRR N +PKLELKLNLSPP A NQ V SPN S S WE+ SPESSCVSSEP++ T + TSMVL GCPRCLMYVMLS+ +PKCP+CKSTVLLDFL+EEN KKA N
Sbjct: 1 MSRREN--SPKLELKLNLSPPXA-------NQQV--------GSPNTSVSSWEM-SPESSCVSSEPDDSTSMQYSSPEATSMVLVGCPRCLMYVMLSEVDPKCPRCKSTVLLDFLSEENAKKARN 107
BLAST of CsN08G008710.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A061GVZ4|A0A061GVZ4_THECC (Gb:AAF02129.1, putative OS=Theobroma cacao OX=3641 GN=TCM_041318 PE=4 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 3.263e-36 Identity = 80/126 (63.49%), Postives = 88/126 (69.84%), Query Frame = 0 Query: 1 MSRRGNNSTPKLELKLNLSPPRATARANNNNQAVIIDSPPNESSPNNSYS-WEVVSPESSCVSSEPEEMTDAAA-AIHVTTSMVLAGCPRCLMYVMLSDANPKCPKCKSTVLLDFLNEENNKKASN 124
MSRR N +PKLELKLNLSPPRA NQ V SPN S S WE+ SPESSCVSSEP++ T + TSMVL GCPRCLMYVMLS+ +PKCP+CKSTVLLDFLNEEN KKA N
Sbjct: 1 MSRREN--SPKLELKLNLSPPRA-------NQQV--------GSPNTSVSSWEM-SPESSCVSSEPDDSTSMQYPSSPEATSMVLVGCPRCLMYVMLSEVDPKCPRCKSTVLLDFLNEENAKKARN 108
BLAST of CsN08G008710.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1R3IKZ3|A0A1R3IKZ3_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_22643 PE=4 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.232e-34 Identity = 75/124 (60.48%), Postives = 85/124 (68.55%), Query Frame = 0 Query: 1 MSRRGNNSTPKLELKLNLSPPRATARANNNNQAVIIDSPPNESSPNNSYSWEVVSPESSCVSSEPEEMTDAAAAIHVTTSMVLAGCPRCLMYVMLSDANPKCPKCKSTVLLDFLNEENNKKASN 124
MSRR +PKLEL+LNLSPPRA NN V SPN S S +SPESSCVSSEPEE ++ TSMVL GCPRCLMYVMLS+ +PKCP+CKSTVLLDFL+EEN KK+ N
Sbjct: 1 MSRRAK--SPKLELELNLSPPRA------NNVRV--------ESPNTSVSSWAMSPESSCVSSEPEEQYPSSPE---ETSMVLVGCPRCLMYVMLSEVDPKCPRCKSTVLLDFLSEENAKKSRN 105
BLAST of CsN08G008710.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A9W7MQ69|A0A9W7MQ69_HIBTR (Uncharacterized protein OS=Hibiscus trionum OX=183268 GN=HRI_004736600 PE=4 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 3.774e-34 Identity = 72/127 (56.69%), Postives = 81/127 (63.78%), Query Frame = 0 Query: 1 MSRRGNNSTPKLELKLNLSPPRATARANNNNQAVIIDSPPNESSPNNSYSWEVVSPESSCVSSEPEEMTDAAAAIHVT---TSMVLAGCPRCLMYVMLSDANPKCPKCKSTVLLDFLNEENNKKASN 124
MS+R N +PKLEL LNLSPPRA SPN S S +SPESSCVSSEP++ T + TSMVL GCPRCLMYVMLS+ +PKCP+CKSTVLLDFLNEEN KK N
Sbjct: 1 MSQRAN--SPKLELTLNLSPPRAPTL--------------QVGSPNTSVSSREMSPESSCVSSEPDDSTTTMVQYPSSPEETSMVLVGCPRCLMYVMLSEVDPKCPRCKSTVLLDFLNEENTKKTRN 111
BLAST of CsN08G008710.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9SRN4|GIR2_ARATH (Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 2.061e-27 Identity = 64/118 (54.24%), Postives = 73/118 (61.86%), Query Frame = 0 Query: 1 MSRRGNNSTPKLELKLNLSPPRATARANNNNQAVIIDSP--PNESSPNNSYSWEVVSPESSCVSSEPEEMTDAAAAIHVTTSMVLAGCPRCLMYVMLSDANPKCPKCKSTVLLDFLNE 116
MSRR N PKLEL+LNLSPP + A +Q ++ SP N +SP SSCVSSE + + TSMVL GCPRCLMYVMLSD +PKCPKCKSTVLLDFL E
Sbjct: 1 MSRRNKNG-PKLELRLNLSPPPSQA-----SQMSLVRSPNRSNTTSP------------SSCVSSETNQEEN-----ETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQE 95
BLAST of CsN08G008710.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9FNI1|GIR1_ARATH (Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.704e-22 Identity = 60/135 (44.44%), Postives = 70/135 (51.85%), Query Frame = 0 Query: 1 MSRRGNNSTPKLELKLNLSPPRATARANNNNQAVIIDSPP-------------------NESSPNNSYSWEVVSPESSCVSSEPEEMTDAAAAIHVTTSMVLAGCPRCLMYVMLSDANPKCPKCKSTVLLDFLNE 116
MSRR +PKLELKLNLSPP ++Q ++ SP N+ P+ YS SPE TTSMVL GCPRCLMYVMLS+ +PKCPKCKSTVLLDFL+E
Sbjct: 1 MSRR----SPKLELKLNLSPP-------TSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDEPSVRYS---TSPE--------------------TTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHE 101
BLAST of CsN08G008710.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9FMS4|SIED1_ARATH (Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 GN=SIED1 PE=1 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 8.363e-10 Identity = 24/45 (53.33%), Postives = 34/45 (75.56%), Query Frame = 0 Query: 80 SMVLAGCPRCLMYVMLSDAN-PKCPKCKSTVLLDFLNEENNKKAS 123
SMV+ GCP C+MY++ S N P+CP+C S VLLDFL ++KK++
Sbjct: 48 SMVVVGCPNCIMYIITSLENDPRCPRCNSHVLLDFLTGNHSKKST 92
BLAST of CsN08G008710.1 vs. Araport11
Match: | (Symbols: GIR2 | | chr3:3667337-3667690 FORWARD LENGTH=117) HSP 1 Score: 100.523 bits (249), Expect = 2.143e-28 Identity = 64/118 (54.24%), Postives = 73/118 (61.86%), Query Frame = 0 Query: 1 MSRRGNNSTPKLELKLNLSPPRATARANNNNQAVIIDSP--PNESSPNNSYSWEVVSPESSCVSSEPEEMTDAAAAIHVTTSMVLAGCPRCLMYVMLSDANPKCPKCKSTVLLDFLNE 116
MSRR N PKLEL+LNLSPP + A +Q ++ SP N +SP SSCVSSE + + TSMVL GCPRCLMYVMLSD +PKCPKCKSTVLLDFL E
Sbjct: 1 MSRRNKNG-PKLELRLNLSPPPSQA-----SQMSLVRSPNRSNTTSP------------SSCVSSETNQEEN-----ETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQE 95
BLAST of CsN08G008710.1 vs. Araport11
Match: | (Symbols: GIR1 | | chr5:1912895-1913263 FORWARD LENGTH=122) HSP 1 Score: 87.4261 bits (215), Expect = 3.845e-23 Identity = 60/135 (44.44%), Postives = 70/135 (51.85%), Query Frame = 0 Query: 1 MSRRGNNSTPKLELKLNLSPPRATARANNNNQAVIIDSPP-------------------NESSPNNSYSWEVVSPESSCVSSEPEEMTDAAAAIHVTTSMVLAGCPRCLMYVMLSDANPKCPKCKSTVLLDFLNE 116
MSRR +PKLELKLNLSPP ++Q ++ SP N+ P+ YS SPE TTSMVL GCPRCLMYVMLS+ +PKCPKCKSTVLLDFL+E
Sbjct: 1 MSRR----SPKLELKLNLSPP-------TSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDEPSVRYS---TSPE--------------------TTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHE 101
BLAST of CsN08G008710.1 vs. Araport11
Match: | (Symbols: GIR1 | | chr5:1912895-1913263 FORWARD LENGTH=122) HSP 1 Score: 87.4261 bits (215), Expect = 3.845e-23 Identity = 60/135 (44.44%), Postives = 70/135 (51.85%), Query Frame = 0 Query: 1 MSRRGNNSTPKLELKLNLSPPRATARANNNNQAVIIDSPP-------------------NESSPNNSYSWEVVSPESSCVSSEPEEMTDAAAAIHVTTSMVLAGCPRCLMYVMLSDANPKCPKCKSTVLLDFLNE 116
MSRR +PKLELKLNLSPP ++Q ++ SP N+ P+ YS SPE TTSMVL GCPRCLMYVMLS+ +PKCPKCKSTVLLDFL+E
Sbjct: 1 MSRR----SPKLELKLNLSPP-------TSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDEPSVRYS---TSPE--------------------TTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHE 101
BLAST of CsN08G008710.1 vs. Araport11
Match: | (Symbols: SIED1 | Salt-Induced and EIN3/EIL1-Dependent 1 | chr5:7372487-7372768 REVERSE LENGTH=93) HSP 1 Score: 55.0694 bits (131), Expect = 8.650e-11 Identity = 24/45 (53.33%), Postives = 34/45 (75.56%), Query Frame = 0 Query: 80 SMVLAGCPRCLMYVMLSDAN-PKCPKCKSTVLLDFLNEENNKKAS 123
SMV+ GCP C+MY++ S N P+CP+C S VLLDFL ++KK++
Sbjct: 48 SMVVVGCPNCIMYIITSLENDPRCPRCNSHVLLDFLTGNHSKKST 92
BLAST of CsN08G008710.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:5639079-5639995 FORWARD LENGTH=259) HSP 1 Score: 50.0618 bits (118), Expect = 4.853e-8 Identity = 24/50 (48.00%), Postives = 30/50 (60.00%), Query Frame = 0 Query: 62 SSEPEEMTDAAAAIHVTTSMVLAGCPRCLMYVMLSDANPKCPKCKSTVLL 111
S E + + D A+ V S V AGCP CL YV ++ NPKCP+C S V L
Sbjct: 196 SPEDDGVYDGTASATVAASQVAAGCPGCLSYVFVAKNNPKCPRCHSFVPL 245 The following BLAST results are available for this feature:
BLAST of CsN08G008710.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2025-01-03 (Blastp of Citrus sinensis cv. Newhall T2T v2.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CsN08G008710.1 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2025-01-03 (Blastp of Citrus sinensis cv. Newhall T2T v2.0 proteins vs UniProt Swissprot) Total hits: 3 Position : 0 Zoom : x 1
BLAST of CsN08G008710.1 vs. Araport11
Analysis Date: 2025-01-03 (Blastp of Citrus sinensis cv. Newhall T2T v2.0 proteins vs Araport11) Total hits: 5 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus sinensis cv. Newhall T2T v2.0 proteins
Date Performed: 2025-01-03 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >drCitSine.Newhall.2.0.CsN08G008710.1 ID=drCitSine.Newhall.2.0.CsN08G008710.1; Name=CsN08G008710.1; organism=Citrus sinensis; type=mRNA; length=375bpback to top protein sequence of drCitSine.Newhall.2.0.CsN08G008710.1 >drCitSine.Newhall.2.0.CsN08G008710.1 ID=drCitSine.Newhall.2.0.CsN08G008710.1; Name=drCitSine.Newhall.2.0.CsN08G008710.1; organism=Citrus sinensis; type=polypeptide; length=125bpback to top mRNA from alignment at Chr08:9860118..9860538+ Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=421bp; location=Sequence derived from: Chr08:9860118..9860538+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at Chr08:9860118..9860538+ >drCitSine.Newhall.2.0.CsN08G008710.1 ID=drCitSine.Newhall.2.0.CsN08G008710.1; Name=CsN08G008710.1; organism=Citrus sinensis; type=CDS; length=375bp; location=Sequence derived from: Chr08:9860118..9860538+ (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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