CsN08G008790.1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of CsN08G008790.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2H5Q9A6|A0A2H5Q9A6_CITUN (Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_208220 PE=4 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 1.687e-49 Identity = 78/81 (96.30%), Postives = 78/81 (96.30%), Query Frame = 0 Query: 1 MGNKPAVPMTVKQEREEILLKVIPPLDRAYVRWLVRDLEMIHRFTSINPHAVKPPDHYIEHMRLYGRLDVDLDDPDLAHLF 81 MGNKPAVPMT KQEREEI LKVIPPLDRAYVRWLVRDLEMIHRFT INPHAVKPPDHYIEHMRLYGRLDVDLDDPDLAHLF Sbjct: 56 MGNKPAVPMTGKQEREEIFLKVIPPLDRAYVRWLVRDLEMIHRFTPINPHAVKPPDHYIEHMRLYGRLDVDLDDPDLAHLF 136
BLAST of CsN08G008790.1 vs. ExPASy TrEMBL (2024)
Match: tr|V4SA89|V4SA89_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029713mg PE=4 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.992e-41 Identity = 78/82 (95.12%), Postives = 80/82 (97.56%), Query Frame = 0 Query: 1 MGNKPAVPMTVKQEREEILLKVIPPLDRAYVRWLVRDLEMIHRFTSINPHAVKPPDHYIEHMRLYGRLDVDLDDPDLAHLFK 82 MGNKPAVPMTVKQEREEI LKV+PPLDRAYVRWLVRD+EMIHRFT INPHAVKPPDHYIEHMRLYGRLDVDLDDPDLAHLFK Sbjct: 1 MGNKPAVPMTVKQEREEICLKVVPPLDRAYVRWLVRDVEMIHRFTPINPHAVKPPDHYIEHMRLYGRLDVDLDDPDLAHLFK 82
BLAST of CsN08G008790.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A067ET55|A0A067ET55_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034833mg PE=4 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.992e-41 Identity = 78/82 (95.12%), Postives = 80/82 (97.56%), Query Frame = 0 Query: 1 MGNKPAVPMTVKQEREEILLKVIPPLDRAYVRWLVRDLEMIHRFTSINPHAVKPPDHYIEHMRLYGRLDVDLDDPDLAHLFK 82 MGNKPAVPMTVKQEREEI LKV+PPLDRAYVRWLVRD+EMIHRFT INPHAVKPPDHYIEHMRLYGRLDVDLDDPDLAHLFK Sbjct: 1 MGNKPAVPMTVKQEREEICLKVVPPLDRAYVRWLVRDVEMIHRFTPINPHAVKPPDHYIEHMRLYGRLDVDLDDPDLAHLFK 82
BLAST of CsN08G008790.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2P6QEB6|A0A2P6QEB6_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0047291 PE=4 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.972e-36 Identity = 65/82 (79.27%), Postives = 67/82 (81.71%), Query Frame = 0 Query: 1 MGNKPAVPMTVKQEREEILLKVIPPLDRAYVRWLVRDLEMIHRFTSINPHAVKPPDHYIEHMRLYGRLDVDLDDPDLAHLFK 82 MGNKPA KQEREEI LKV+PPLDRAYVRWL RDLE IH FT NP AVKPPDHYIE+MRL G LDVDL DPDLAHLFK Sbjct: 1 MGNKPA-----KQEREEIFLKVVPPLDRAYVRWLARDLERIHGFTPANPRAVKPPDHYIEYMRLNGWLDVDLSDPDLAHLFK 77
BLAST of CsN08G008790.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A438DCX1|A0A438DCX1_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_085320 PE=4 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 6.541e-35 Identity = 62/82 (75.61%), Postives = 68/82 (82.93%), Query Frame = 0 Query: 1 MGNKPAVPMTVKQEREEILLKVIPPLDRAYVRWLVRDLEMIHRFTSINPHAVKPPDHYIEHMRLYGRLDVDLDDPDLAHLFK 82 MGNKP VK+E+EEI LK++PPLDRAYVRWL RDLE IH FT NP AVKPPDHYIE+MRL G LDV+LDDPDLAHLFK Sbjct: 1 MGNKP-----VKEEKEEIFLKIVPPLDRAYVRWLARDLERIHGFTPKNPRAVKPPDHYIEYMRLNGWLDVNLDDPDLAHLFK 77
BLAST of CsN08G008790.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA39A2J0|A0AA39A2J0_VITRO (Uncharacterized protein OS=Vitis rotundifolia OX=103349 GN=PVL29_008267 PE=4 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 6.541e-35 Identity = 62/82 (75.61%), Postives = 68/82 (82.93%), Query Frame = 0 Query: 1 MGNKPAVPMTVKQEREEILLKVIPPLDRAYVRWLVRDLEMIHRFTSINPHAVKPPDHYIEHMRLYGRLDVDLDDPDLAHLFK 82 MGNKP VK+E+EEI LK++PPLDRAYVRWL RDLE IH FT NP AVKPPDHYIE+MRL G LDV+LDDPDLAHLFK Sbjct: 1 MGNKP-----VKEEKEEIFLKIVPPLDRAYVRWLARDLERIHGFTPKNPRAVKPPDHYIEYMRLNGWLDVNLDDPDLAHLFK 77
BLAST of CsN08G008790.1 vs. ExPASy TrEMBL (2024)
Match: tr|D7TCP5|D7TCP5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0080g01120 PE=4 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 7.049e-35 Identity = 62/82 (75.61%), Postives = 68/82 (82.93%), Query Frame = 0 Query: 1 MGNKPAVPMTVKQEREEILLKVIPPLDRAYVRWLVRDLEMIHRFTSINPHAVKPPDHYIEHMRLYGRLDVDLDDPDLAHLFK 82 MGNKP VK+E+EEI LK++PPLDRAYVRWL RDLE IH FT NP AVKPPDHYIE+MRL G LDV+LDDPDLAHLFK Sbjct: 105 MGNKP-----VKEEKEEIFLKIVPPLDRAYVRWLARDLERIHGFTPKNPRAVKPPDHYIEYMRLNGWLDVNLDDPDLAHLFK 181
BLAST of CsN08G008790.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A5N5GNE1|A0A5N5GNE1_9ROSA (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_021740 PE=4 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 7.141e-35 Identity = 62/82 (75.61%), Postives = 67/82 (81.71%), Query Frame = 0 Query: 1 MGNKPAVPMTVKQEREEILLKVIPPLDRAYVRWLVRDLEMIHRFTSINPHAVKPPDHYIEHMRLYGRLDVDLDDPDLAHLFK 82 MGNKPA KQEREE+LLKV+PPLDRAYVRWL RDLE H FT +NP AVKPP+HYIE+M L G LDVDL DPDLAHLFK Sbjct: 1 MGNKPA-----KQEREEVLLKVVPPLDRAYVRWLARDLERTHGFTPVNPRAVKPPEHYIEYMHLNGWLDVDLGDPDLAHLFK 77
BLAST of CsN08G008790.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A978VSK6|A0A978VSK6_ZIZJJ (Late embryogenesis abundant protein LEA-2 subgroup domain-containing protein OS=Ziziphus jujuba var. spinosa OX=714518 GN=FEM48_Zijuj02G0006100 PE=4 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 1.204e-34 Identity = 61/82 (74.39%), Postives = 67/82 (81.71%), Query Frame = 0 Query: 1 MGNKPAVPMTVKQEREEILLKVIPPLDRAYVRWLVRDLEMIHRFTSINPHAVKPPDHYIEHMRLYGRLDVDLDDPDLAHLFK 82 MGNKPA KQER+EILLKVIPP+D+AY RWL RDLE IH F + P AVKPPDHYIE+MRL G LDV+LDDPDLAHLFK Sbjct: 209 MGNKPA-----KQERDEILLKVIPPVDQAYARWLARDLERIHGFIPVKPRAVKPPDHYIEYMRLNGWLDVNLDDPDLAHLFK 285
BLAST of CsN08G008790.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2P5BES3|A0A2P5BES3_TREOI (Aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B OS=Trema orientale OX=63057 GN=TorRG33x02_323760 PE=4 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 3.491e-34 Identity = 62/82 (75.61%), Postives = 67/82 (81.71%), Query Frame = 0 Query: 1 MGNKPAVPMTVKQEREEILLKVIPPLDRAYVRWLVRDLEMIHRFTSINPHAVKPPDHYIEHMRLYGRLDVDLDDPDLAHLFK 82 MGNKP VKQE EEI LKVIPPLDRAY+RWL RDLE IH FT + P AVKPPDHYIE+MRL G LDV+LDDPD+AHLFK Sbjct: 1 MGNKP-----VKQEPEEIFLKVIPPLDRAYMRWLARDLERIHGFTPVKPRAVKPPDHYIEYMRLNGWLDVNLDDPDIAHLFK 77
BLAST of CsN08G008790.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:7359549-7359791 FORWARD LENGTH=80) HSP 1 Score: 82.4185 bits (202), Expect = 2.722e-22 Identity = 53/83 (63.86%), Postives = 62/83 (74.70%), Query Frame = 0 Query: 1 MGNKPAVPMTVKQEREEILLKVIPPLDRAYVRWLVRDLEMIHRFT-SINPHAVKPPDHYIEHMRLYGRLDVDLDDPDLAHLFK 82 MGNK TVK+EREEI LK++PPLD+ ++RWL RDL+ +H F N A+ PPD YIE MRL G LDVDLDDPDLAHLFK Sbjct: 1 MGNKAT---TVKEEREEIHLKIVPPLDKVFLRWLARDLQRVHGFKPKNNTRAITPPDSYIEFMRLNGSLDVDLDDPDLAHLFK 80
BLAST of CsN08G008790.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:7359549-7359791 FORWARD LENGTH=80) HSP 1 Score: 82.4185 bits (202), Expect = 2.722e-22 Identity = 53/83 (63.86%), Postives = 62/83 (74.70%), Query Frame = 0 Query: 1 MGNKPAVPMTVKQEREEILLKVIPPLDRAYVRWLVRDLEMIHRFT-SINPHAVKPPDHYIEHMRLYGRLDVDLDDPDLAHLFK 82 MGNK TVK+EREEI LK++PPLD+ ++RWL RDL+ +H F N A+ PPD YIE MRL G LDVDLDDPDLAHLFK Sbjct: 1 MGNKAT---TVKEEREEIHLKIVPPLDKVFLRWLARDLQRVHGFKPKNNTRAITPPDSYIEFMRLNGSLDVDLDDPDLAHLFK 80 The following BLAST results are available for this feature:
BLAST of CsN08G008790.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2025-01-03 (Blastp of Citrus sinensis cv. Newhall T2T v2.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of CsN08G008790.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2025-01-03 (Blastp of Citrus sinensis cv. Newhall T2T v2.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of CsN08G008790.1 vs. Araport11
Analysis Date: 2025-01-03 (Blastp of Citrus sinensis cv. Newhall T2T v2.0 proteins vs Araport11) Total hits: 2 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >drCitSine.Newhall.2.0.CsN08G008790.1 ID=drCitSine.Newhall.2.0.CsN08G008790.1; Name=CsN08G008790.1; organism=Citrus sinensis; type=mRNA; length=249bpback to top protein sequence of drCitSine.Newhall.2.0.CsN08G008790.1 >drCitSine.Newhall.2.0.CsN08G008790.1 ID=drCitSine.Newhall.2.0.CsN08G008790.1; Name=drCitSine.Newhall.2.0.CsN08G008790.1; organism=Citrus sinensis; type=polypeptide; length=83bpback to top mRNA from alignment at Chr08:9903436..9905133- Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1698bp; location=Sequence derived from: Chr08:9903436..9905133- (Citrus sinensisback to top Coding sequence (CDS) from alignment at Chr08:9903436..9905133- >drCitSine.Newhall.2.0.CsN08G008790.1 ID=drCitSine.Newhall.2.0.CsN08G008790.1; Name=CsN08G008790.1; organism=Citrus sinensis; type=CDS; length=249bp; location=Sequence derived from: Chr08:9903436..9905133- (Citrus sinensisback to top |