Egl085190.1 | Citrus Genome Database

Transcript Overview


Name	Egl085190.1
Unique Name	Egl085190.1-AZM_v1
Type	mRNA
Organism	Citrus australasica (Australian finger lime)
Sequence length	273

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus australasica cv. AZM genome v1.0	2023-12-21
InterProScan Analysis for Citrus australasica cv. AZM v1.0 proteins	2024-02-02
Blastp of Citrus australasica cv. AZM v1.0 proteins vs UniProt TrEMBL	2024-02-02
Blastp of Citrus australasica cv. AZM v1.0 proteins vs UniProt Swissprot	2024-02-02
Blastp of Citrus australasica cv. AZM v1.0 proteins vs Araport11	2024-02-02

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
caacmjR496	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
caacmjR503	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima

Orthologs


Gene/Transcript	Assembly	Species
CMJ_chr3_027220.1	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Egl085190	Egl085190-AZM_v1	Citrus australasica	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Egl085190.1.exon1	Egl085190.1.exon1-AZM_v1	Citrus australasica	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Egl085190.1.cds.1	Egl085190.1.cds.1-AZM_v1	Citrus australasica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Egl085190.1-AZM_v1	Egl085190.1-AZM_v1	Citrus australasica	polypeptide
Egl085190.1-AZM_v1	Egl085190.1-AZM_v1-protein	Citrus australasica	polypeptide

Homology

The following BLAST results are available for this feature:

BLAST of Egl085190.1 vs.
BLAST of Egl085190.1 vs.
BLAST of Egl085190.1 vs.

BLAST of Egl085190.1 vs.
Analysis Date: 2024-02-02 (Blastp of Citrus australasica cv. AZM v1.0 proteins vs UniProt TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Egl085190.1 vs.
Analysis Date: 2024-02-02 (Blastp of Citrus australasica cv. AZM v1.0 proteins vs UniProt Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Egl085190.1 vs.
Analysis Date: 2024-02-02 (Blastp of Citrus australasica cv. AZM v1.0 proteins vs Araport11)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at contig100:989451..989723+
coding sequence from alignment at contig100:989451..989723+

mRNA sequence

>Egl085190.1-AZM_v1 ID=Egl085190.1-AZM_v1; Name=Egl085190.1; organism=Citrus australasica; type=mRNA; length=273bp
ATGGGGCCCAGCAATAAAGGTCCCTCGTCGCAACTCGCAAGCACCAAATT
CCACGTGTCCTACACGACTCAGCGTCGAAGCAGGCAAAAAGCCAAAAGCA
GCCCTCTTTTAATGAAAGTTCGTGACCTCAACGCCAGCAAGGAAGCCGTG
CGTTGTGCGTTTGTAAATCTGACACGTGGATTCGTCGTACAGTATTCGGT
GCCACGCCGGCACTATTTAAAGTTTGTGTCATTAAAGGTTGGCGAACGCG
AGCTCTCACGGTTCCTCTTTTAA

protein sequence of Egl085190.1-AZM_v1

>Egl085190.1-AZM_v1 ID=Egl085190.1-AZM_v1; Name=Egl085190.1-AZM_v1; organism=Citrus australasica; type=polypeptide; length=91bp
MGPSNKGPSSQLASTKFHVSYTTQRRSRQKAKSSPLLMKVRDLNASKEAV
RCAFVNLTRGFVVQYSVPRRHYLKFVSLKVGERELSRFLF*

mRNA from alignment at contig100:989451..989723+

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=273bp; location=Sequence derived from: contig100:989451..989723+ (Citrus australasica
ATGGGGCCCAGCAATAAAGGTCCCTCGTCGCAACTCGCAAGCACCAAATT
CCACGTGTCCTACACGACTCAGCGTCGAAGCAGGCAAAAAGCCAAAAGCA
GCCCTCTTTTAATGAAAGTTCGTGACCTCAACGCCAGCAAGGAAGCCGTG
CGTTGTGCGTTTGTAAATCTGACACGTGGATTCGTCGTACAGTATTCGGT
GCCACGCCGGCACTATTTAAAGTTTGTGTCATTAAAGGTTGGCGAACGCG
AGCTCTCACGGTTCCTCTTTTAA

Coding sequence (CDS) from alignment at contig100:989451..989723+

>Egl085190.1-AZM_v1 ID=Egl085190.1-AZM_v1; Name=Egl085190.1; organism=Citrus australasica; type=CDS; length=273bp; location=Sequence derived from: contig100:989451..989723+ (Citrus australasica
ATGGGGCCCAGCAATAAAGGTCCCTCGTCGCAACTCGCAAGCACCAAATT
CCACGTGTCCTACACGACTCAGCGTCGAAGCAGGCAAAAAGCCAAAAGCA
GCCCTCTTTTAATGAAAGTTCGTGACCTCAACGCCAGCAAGGAAGCCGTG
CGTTGTGCGTTTGTAAATCTGACACGTGGATTCGTCGTACAGTATTCGGT
GCCACGCCGGCACTATTTAAAGTTTGTGTCATTAAAGGTTGGCGAACGCG
AGCTCTCACGGTTCCTCTTTTAA