Egl088940.2
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Egl088940.2 vs. ExPASy TrEMBL
Match: A0A067GWR9|A0A067GWR9_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g047760mg PE=4 SV=1) HSP 1 Score: 392.504 bits (1007), Expect = 7.467e-138 Identity = 189/194 (97.42%), Postives = 190/194 (97.94%), Query Frame = 0 Query: 1 MAAPMLIRGSPFLRFRPAARLLGLPRVTFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194
MAAPML RG P LRFRPAARLLGLPR TFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFG+SRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG
Sbjct: 1 MAAPMLFRGLPLLRFRPAARLLGLPRATFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194
BLAST of Egl088940.2 vs. ExPASy TrEMBL
Match: V4SJN6|V4SJN6_CITCL (Protein DCL, chloroplastic OS=Citrus clementina OX=85681 GN=CICLE_v10002565mg PE=4 SV=1) HSP 1 Score: 390.963 bits (1003), Expect = 3.395e-137 Identity = 188/194 (96.91%), Postives = 189/194 (97.42%), Query Frame = 0 Query: 1 MAAPMLIRGSPFLRFRPAARLLGLPRVTFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194
MA+PML G P LRFRPAARLLGLPR TFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG
Sbjct: 1 MASPMLFWGLPLLRFRPAARLLGLPRATFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194
BLAST of Egl088940.2 vs. ExPASy TrEMBL
Match: A0A5C7H5U5|A0A5C7H5U5_9ROSI (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_021632 PE=4 SV=1) HSP 1 Score: 316.62 bits (810), Expect = 7.173e-108 Identity = 150/194 (77.32%), Postives = 165/194 (85.05%), Query Frame = 0 Query: 1 MAAPMLIRGSPFLRFRPAARLLGLPRVTFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194
MAA +L+RG P R R AARLL P FC AA SE +PEE +SSA+ TTTLL+VK P +YH DPDYRKW+DKE+EILRDIEPI FLAK+I+HS RYMDGERLT +DE+AVVEKLLAYHPHSEDKIGCGLD+IMVDRHPQF +SRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHF RGS
Sbjct: 1 MAASLLLRGVPLQRLRLAARLLVQPSRQFCLAAASESNKPEENVSSAEKTTTTLLSVKHPVRYHSLDDPDYRKWRDKEEEILRDIEPITFLAKDIIHSERYMDGERLTVEDEKAVVEKLLAYHPHSEDKIGCGLDSIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSS 194
BLAST of Egl088940.2 vs. ExPASy TrEMBL
Match: A0A061FIP8|A0A061FIP8_THECC (DCL protein OS=Theobroma cacao OX=3641 GN=TCM_033766 PE=4 SV=1) HSP 1 Score: 296.975 bits (759), Expect = 5.755e-100 Identity = 147/200 (73.50%), Postives = 168/200 (84.00%), Query Frame = 0 Query: 1 MAAPMLIRGSPFLRFRP------AARLLGLPRVTFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194
MAAP+L++G P LR R AARLL PR +C+AA E EE++SSA+ ++T+L+V EPPKYHRW DPDYRKWKDKE+EILRDIEPI+ L+KEILHS RYMDGERLT +DE VVEKLL++HPHSEDKIGCGLD+IMVDRHPQF +SRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFI +HF RGSG
Sbjct: 1 MAAPLLLKGFPLLRLRLQHYNRLAARLLSAPRRPWCTAA--ESAGHEEEVSSAEK-SSTVLSVTEPPKYHRWDDPDYRKWKDKEEEILRDIEPIISLSKEILHSDRYMDGERLTVEDEETVVEKLLSHHPHSEDKIGCGLDSIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIGKHFKRGSG 197
BLAST of Egl088940.2 vs. ExPASy TrEMBL
Match: A0A5B7BJS3|A0A5B7BJS3_DAVIN (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_037492 PE=4 SV=1) HSP 1 Score: 285.804 bits (730), Expect = 1.295e-95 Identity = 142/197 (72.08%), Postives = 161/197 (81.73%), Query Frame = 0 Query: 1 MAAPMLIRGSPFLRFRPAARLLGLPRVT---FCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194
MAAP+L+RG P LRFR L L +T +C+AA E +P++ +S+A TT + K+PP Y RW DPDYRKWKDKE EILRDI+PI L KEILHS RYMDGERLTA+DE+AVVEKLLAYHPHSEDKIGCGLD+IMVDRHPQF +SRCLFV+RTDGGWIDFSYQKCLRAYIR+KYP HAERFIREHF RGSG
Sbjct: 1 MAAPLLLRGVPLLRFRLQHHRLALGILTHRPWCTAA--ESARPDDDVSNA-GQTTAVFRAKDPPNYPRWDDPDYRKWKDKEGEILRDIDPITLLTKEILHSDRYMDGERLTAEDEKAVVEKLLAYHPHSEDKIGCGLDSIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKYPFHAERFIREHFKRGSG 194
BLAST of Egl088940.2 vs. ExPASy TrEMBL
Match: A0A1U7XY00|A0A1U7XY00_NICSY (Protein DCL, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=LOC104238989 PE=4 SV=1) HSP 1 Score: 284.648 bits (727), Expect = 4.109e-95 Identity = 135/197 (68.53%), Postives = 160/197 (81.22%), Query Frame = 0 Query: 1 MAAPMLIRGSPFLRFRPAARLLGLPRVTFCS----AAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGS 193
MAAP+L+RG P LR R + L P + +A SE QP + +S ++NTTT+L K+PPKY RW DPDYRKWK++E +IL+DIEP++FLAKEI+HS RYMDGERLTA+DE+ VV+KLLAYHPH EDKIGCGLD+IMVDRHPQF SRCLFVVRTDGGWIDFSYQKCLR YIRDKYPS+AE+FI+EHF RGS
Sbjct: 1 MAAPLLLRGFPLLRLRFCNQRLQSPSFVLLAPRLFSASSESGQPYDDAASIEDNTTTVLRTKDPPKYPRWPDPDYRKWKERETQILKDIEPVIFLAKEIIHSDRYMDGERLTAEDEKIVVDKLLAYHPHCEDKIGCGLDSIMVDRHPQFRRSRCLFVVRTDGGWIDFSYQKCLRQYIRDKYPSYAEKFIKEHFKRGS 197
BLAST of Egl088940.2 vs. ExPASy TrEMBL
Match: A0A6A2WRM6|A0A6A2WRM6_HIBSY (F-box protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116997pilonHSYRG00945 PE=4 SV=1) HSP 1 Score: 283.493 bits (724), Expect = 1.151e-94 Identity = 140/200 (70.00%), Postives = 161/200 (80.50%), Query Frame = 0 Query: 1 MAAPMLIRGSPFLRFRPA------ARLLGLPRVTFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194
MA+P+L++G P LR R A + PR FC+A S+ T +E++SSA+ + ++LTV++PPKYHRW DPDYRKWKDKE+EILRDIEPI+ L KEILHS RY DGERL DE V+EKLL +HPHSEDKIGCGLD+IMVDRHPQF SRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHF RGSG
Sbjct: 1 MASPLLLKGIPLLRIRLQRYNCLFAGTVSSPRRPFCAA--SDTTGHKEEVSSAEK-SGSVLTVRDPPKYHRWDDPDYRKWKDKEEEILRDIEPIISLVKEILHSNRYKDGERLIVSDEETVLEKLLRHHPHSEDKIGCGLDSIMVDRHPQFSRSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFKRGSG 197
BLAST of Egl088940.2 vs. ExPASy TrEMBL
Match: A0A314KQB0|A0A314KQB0_NICAT (Protein dcl, chloroplastic OS=Nicotiana attenuata OX=49451 GN=DCL_0 PE=4 SV=1) HSP 1 Score: 283.493 bits (724), Expect = 1.256e-94 Identity = 134/197 (68.02%), Postives = 159/197 (80.71%), Query Frame = 0 Query: 1 MAAPMLIRGSPFLRFRPAARLLGLPRVTFCS----AAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGS 193
MAAP+L+RG P LR R + L P + +A SE QP + +S + NTTT+L K+PPKY RW DPDYRKWK++E +IL++IEP++FLAKEI+HS RYMDGERLTA+DE+ VV+KLLAYHPH EDKIGCGLD+IMVDRHPQF SRCLFVVRTDGGWIDFSYQKCLR YIRDKYPS+AE+FI+EHF RGS
Sbjct: 1 MAAPLLLRGFPLLRLRFCNQRLQSPSFVLLAPRLFSAASESAQPYDDAASNEENTTTVLRTKDPPKYPRWPDPDYRKWKERETQILKEIEPVIFLAKEIIHSDRYMDGERLTAEDEKIVVDKLLAYHPHCEDKIGCGLDSIMVDRHPQFRRSRCLFVVRTDGGWIDFSYQKCLRQYIRDKYPSYAEKFIKEHFKRGS 197
BLAST of Egl088940.2 vs. ExPASy TrEMBL
Match: A0A8T1N1T6|A0A8T1N1T6_CARIL (DCL protein OS=Carya illinoinensis OX=32201 GN=CIPAW_16G037700 PE=4 SV=1) HSP 1 Score: 281.952 bits (720), Expect = 4.683e-94 Identity = 139/201 (69.15%), Postives = 159/201 (79.10%), Query Frame = 0 Query: 1 MAAPMLIRGSPFLR-------FRPAARLLGLPRVTFCSAAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG 194
MAAP+L+RG P R +R AA PR +C++A EP++ ++ LSS D +T + +PPKY RW DPDYRKWKDKE EIL+DI PI L KEILHS RY+DGERLT +DE+AVVEKLLAYHPHS+DKIGCGLD+IMVDRHPQF SRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFI+EHF RGSG
Sbjct: 1 MAAPLLLRGLPLFRLRLHHHQYRAAAGFFSTPRRPWCTSA--EPSRADDSLSSTDKSTPAW-SAGDPPKYPRWDDPDYRKWKDKEVEILKDIVPITLLTKEILHSNRYLDGERLTVEDEKAVVEKLLAYHPHSDDKIGCGLDSIMVDRHPQFKRSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIKEHFKRGSG 198
BLAST of Egl088940.2 vs. ExPASy TrEMBL
Match: A0A0V0HIF2|A0A0V0HIF2_SOLCH (Protein DCL, chloroplastic-like OS=Solanum chacoense OX=4108 PE=4 SV=1) HSP 1 Score: 281.952 bits (720), Expect = 5.218e-94 Identity = 134/197 (68.02%), Postives = 157/197 (79.70%), Query Frame = 0 Query: 1 MAAPMLIRGSPFLRFRPAARLLGLPRVTFCS----AAPSEPTQPEEKLSSADNNTTTLLTVKEPPKYHRWADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGS 193
MAAP+L+RG P LR R + L P S +A SE QP + +S + TT +L+ K+PP Y RW DPDYRKWKD+E +IL+DIEP++FLAKEI+HS RYMDGERLTA+DE+ VV+KLLAYHPHSEDKIGCGLD+IMVDRHPQF SRCLFVVR DGGWIDFSYQKCLR YIRDKYPS+AE+FI+EHF RGS
Sbjct: 1 MAAPLLLRGLPILRLRFCYQRLPNPSFVLLSPRLFSAASESAQPFDDAASDXDQTTAVLSAKDPPNYPRWTDPDYRKWKDQETQILKDIEPVIFLAKEIIHSDRYMDGERLTAEDEKIVVDKLLAYHPHSEDKIGCGLDSIMVDRHPQFKRSRCLFVVRLDGGWIDFSYQKCLRQYIRDKYPSYAEKFIKEHFKRGS 197
BLAST of Egl088940.2 vs. ExPASy Swiss-Prot
Match: DCL_SOLLC (Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 1.401e-35 Identity = 59/122 (48.36%), Postives = 80/122 (65.57%), Query Frame = 0 Query: 70 DYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSR 191
D W D ED+IL D P++ + ILHS +Y G+RL+ D +R ++++LL YHP + KIG G+D I V HP F NSRCLF+VR DG +DFSY KC++ IR YP +A+ FI HF +
Sbjct: 98 DGEGWVDWEDQILEDTVPLVGFVRMILHSGKYAIGDRLSPDHQRTILQRLLPYHPECDKKIGPGVDYITVGYHPDFENSRCLFIVRKDGETVDFSYWKCIKGLIRKNYPLYADSFILRHFRK 219
BLAST of Egl088940.2 vs. ExPASy Swiss-Prot
Match: DCL_ARATH (Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 2.152e-35 Identity = 57/119 (47.90%), Postives = 81/119 (68.07%), Query Frame = 0 Query: 73 KWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSR 191
++ D ED+IL P++ + ILHS +Y + +RL+ + ER ++E LL YHP E KIGCG+D IMV HP F +SRC+F+VR DG +DFSY KC++ I+ KYP +A+ FI HF +
Sbjct: 96 EFVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRK 214
BLAST of Egl088940.2 vs. ExPASy Swiss-Prot
Match: NRPE1_ARATH (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1 PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 3.690e-30 Identity = 53/115 (46.09%), Postives = 78/115 (67.83%), Query Frame = 0 Query: 77 KEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSR 191
+E E+L D+EP++ ++I+H Y DG+ ++ DD+ V+EK+L +HP E K+G G+D I VD+H F +SRC FVV TDG DFSY+K L Y+ KYP AE FI ++F++
Sbjct: 1735 EEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849
BLAST of Egl088940.2 vs. ExPASy Swiss-Prot
Match: NRPD1_ARATH (DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD1 PE=1 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 3.712e-9 Identity = 39/111 (35.14%), Postives = 58/111 (52.25%), Query Frame = 0 Query: 83 RDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGS 193
++IE + K ILHS Y E L DE +V+ +L HP+S +KIG G+ I V + + G+S C VVR DG + DFSY KC+ + P + ++ G+
Sbjct: 1337 KNIELLSQSLKRILHS--YEINELLNERDE-GLVKMVLQLHPNSVEKIGPGVKGIRVAKS-KHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1443
BLAST of Egl088940.2 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:17181138-17182346 REVERSE LENGTH=207) HSP 1 Score: 227.254 bits (578), Expect = 6.377e-76 Identity = 115/181 (63.54%), Postives = 133/181 (73.48%), Query Frame = 0 Query: 18 AARLLGLPRVTFCSAAPS-EPTQPEEKLSSADNNTTTLLTVKEPPKYHRW--ADPDYRKWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGSG* 195
A +L R CS A + + + +S + + + V P + W DPDYRKWK+ E EILRDIEPI LAKEILHS RY+DGERL +DE+ V+EKLL YHP+S+DKIGCGLD IMVDRHPQF +SRCLFVVRTDGGWIDFSYQKCLRAY+RDKYPSHAERFIREHF R S *
Sbjct: 28 AGGILSHRRRLLCSLADRPQFYENNDSVSPVEGSGAAAMNVTSPVVDNSWRYEDPDYRKWKNLEAEILRDIEPISLLAKEILHSDRYLDGERLDFEDEKIVMEKLLPYHPYSKDKIGCGLDFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYVRDKYPSHAERFIREHFKRASS* 208
BLAST of Egl088940.2 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:17169874-17171381 REVERSE LENGTH=219) HSP 1 Score: 126.716 bits (317), Expect = 2.240e-36 Identity = 57/119 (47.90%), Postives = 81/119 (68.07%), Query Frame = 0 Query: 73 KWKDKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSR 191
++ D ED+IL P++ + ILHS +Y + +RL+ + ER ++E LL YHP E KIGCG+D IMV HP F +SRC+F+VR DG +DFSY KC++ I+ KYP +A+ FI HF +
Sbjct: 96 EFVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRK 214
BLAST of Egl088940.2 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:17169874-17171381 REVERSE LENGTH=219) HSP 1 Score: 125.561 bits (314), Expect = 7.481e-36 Identity = 57/116 (49.14%), Postives = 79/116 (68.10%), Query Frame = 0 Query: 76 DKEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSR 191
D ED+IL P++ + ILHS +Y + +RL+ + ER ++E LL YHP E KIGCG+D IMV HP F +SRC+F+VR DG +DFSY KC++ I+ KYP +A+ FI HF +
Sbjct: 99 DWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVWHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSFILRHFRK 214
BLAST of Egl088940.2 vs. Araport11
Match: | (Symbols: DMS5, NRPD1B, NRPE1, DRD3, ATNRPD1B | DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B | chr2:16715089-16723406 FORWARD LENGTH=1976) HSP 1 Score: 119.783 bits (299), Expect = 3.742e-31 Identity = 53/115 (46.09%), Postives = 78/115 (67.83%), Query Frame = 0 Query: 77 KEDEILRDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSR 191
+E E+L D+EP++ ++I+H Y DG+ ++ DD+ V+EK+L +HP E K+G G+D I VD+H F +SRC FVV TDG DFSY+K L Y+ KYP AE FI ++F++
Sbjct: 1735 EEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849
BLAST of Egl088940.2 vs. Araport11
Match: | (Symbols: NRPD1, NRPD1A, POL IVA, SMD2, SDE4 | SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A | chr1:23355329-23361126 REVERSE LENGTH=1453) HSP 1 Score: 58.9214 bits (141), Expect = 3.764e-10 Identity = 39/111 (35.14%), Postives = 58/111 (52.25%), Query Frame = 0 Query: 83 RDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGS 193
++IE + K ILHS Y E L DE +V+ +L HP+S +KIG G+ I V + + G+S C VVR DG + DFSY KC+ + P + ++ G+
Sbjct: 1337 KNIELLSQSLKRILHS--YEINELLNERDE-GLVKMVLQLHPNSVEKIGPGVKGIRVAKS-KHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1443
BLAST of Egl088940.2 vs. Araport11
Match: | (Symbols: NRPD1, NRPD1A, POL IVA, SMD2, SDE4 | SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A | chr1:23355329-23361126 REVERSE LENGTH=1453) HSP 1 Score: 58.9214 bits (141), Expect = 3.764e-10 Identity = 39/111 (35.14%), Postives = 58/111 (52.25%), Query Frame = 0 Query: 83 RDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGS 193
++IE + K ILHS Y E L DE +V+ +L HP+S +KIG G+ I V + + G+S C VVR DG + DFSY KC+ + P + ++ G+
Sbjct: 1337 KNIELLSQSLKRILHS--YEINELLNERDE-GLVKMVLQLHPNSVEKIGPGVKGIRVAKS-KHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1443
BLAST of Egl088940.2 vs. Araport11
Match: | (Symbols: NRPD1, NRPD1A, POL IVA, SMD2, SDE4 | SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A | chr1:23355329-23361126 REVERSE LENGTH=1439) HSP 1 Score: 58.9214 bits (141), Expect = 3.943e-10 Identity = 39/111 (35.14%), Postives = 58/111 (52.25%), Query Frame = 0 Query: 83 RDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGS 193
++IE + K ILHS Y E L DE +V+ +L HP+S +KIG G+ I V + + G+S C VVR DG + DFSY KC+ + P + ++ G+
Sbjct: 1323 KNIELLSQSLKRILHS--YEINELLNERDE-GLVKMVLQLHPNSVEKIGPGVKGIRVAKS-KHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1429
BLAST of Egl088940.2 vs. Araport11
Match: | (Symbols: NRPD1, NRPD1A, POL IVA, SMD2, SDE4 | SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A | chr1:23355329-23359611 REVERSE LENGTH=1145) HSP 1 Score: 58.9214 bits (141), Expect = 4.038e-10 Identity = 39/111 (35.14%), Postives = 58/111 (52.25%), Query Frame = 0 Query: 83 RDIEPILFLAKEILHSRRYMDGERLTADDERAVVEKLLAYHPHSEDKIGCGLDAIMVDRHPQFGNSRCLFVVRTDGGWIDFSYQKCLRAYIRDKYPSHAERFIREHFSRGS 193
++IE + K ILHS Y E L DE +V+ +L HP+S +KIG G+ I V + + G+S C VVR DG + DFSY KC+ + P + ++ G+
Sbjct: 1029 KNIELLSQSLKRILHS--YEINELLNERDE-GLVKMVLQLHPNSVEKIGPGVKGIRVAK-SKHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLKNGT 1135 The following BLAST results are available for this feature:
BLAST of Egl088940.2 vs. ExPASy TrEMBL
Analysis Date: 2024-02-02 (Blastp of Citrus australasica cv. AZM v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of Egl088940.2 vs. ExPASy Swiss-Prot
Analysis Date: 2024-02-02 (Blastp of Citrus australasica cv. AZM v1.0 proteins vs UniProt Swissprot) Total hits: 4 Position : 0 Zoom : x 1
BLAST of Egl088940.2 vs. Araport11
Analysis Date: 2024-02-02 (Blastp of Citrus australasica cv. AZM v1.0 proteins vs Araport11) Total hits: 8 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus australasica cv. AZM v1.0 proteins
Date Performed: 2024-02-02 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Egl088940.2-AZM_v1 ID=Egl088940.2-AZM_v1; Name=Egl088940.2; organism=Citrus australasica; type=mRNA; length=585bpback to top protein sequence of Egl088940.2-AZM_v1 >Egl088940.2-AZM_v1 ID=Egl088940.2-AZM_v1; Name=Egl088940.2-AZM_v1; organism=Citrus australasica; type=polypeptide; length=195bpback to top mRNA from alignment at contig100:3298168..3302174+ Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=4007bp; location=Sequence derived from: contig100:3298168..3302174+ (Citrus australasicaback to top Coding sequence (CDS) from alignment at contig100:3298168..3302174+ >Egl088940.2-AZM_v1 ID=Egl088940.2-AZM_v1; Name=Egl088940.2; organism=Citrus australasica; type=CDS; length=585bp; location=Sequence derived from: contig100:3298168..3302174+ (Citrus australasicaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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