Egl090330.1 | Citrus Genome Database

Transcript Overview


Name	Egl090330.1
Unique Name	Egl090330.1-AZM_v1
Type	mRNA
Organism	Citrus australasica (Australian finger lime)
Sequence length	459

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus australasica cv. AZM genome v1.0	2023-12-21
InterProScan Analysis for Citrus australasica cv. AZM v1.0 proteins	2024-02-02
Blastp of Citrus australasica cv. AZM v1.0 proteins vs UniProt TrEMBL	2024-02-02
Blastp of Citrus australasica cv. AZM v1.0 proteins vs UniProt Swissprot	2024-02-02
Blastp of Citrus australasica cv. AZM v1.0 proteins vs Araport11	2024-02-02

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
caacmmR520	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
caaccR448	Citrus clementina genome v1.0 (JGI)	Citrus clementina
caaccR457	Citrus clementina genome v1.0 (JGI)	Citrus clementina
caacauR480	Citrus australis genome v1.0 (UQ)	Citrus australis
caaccrR0788	Citrus australasica CRC3672 genome v1	Citrus australasica
caaccrR0799	Citrus australasica CRC3672 genome v1	Citrus australasica
caacmR524	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
caacmR526	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
caacleR0834	Citrus limon cv. Eureka genome v1.0	Citrus limon
caacleR0835	Citrus limon cv. Eureka genome v1.0	Citrus limon
caacsR558	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
caacmjR504	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
caadvaR372	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
caadvbR383	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
caaswoR480	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
caafhsR554	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
caafhsR555	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
caazkR535	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata

Orthologs


Gene/Transcript	Assembly	Species
Pt5g006080.1	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
CMJ_chr3_022580.1	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
Ciclev10002764m	Citrus clementina genome v1.0 (JGI)	Citrus clementina
orange1.1g031813m.v1.1	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
Cs_ont_3g006900.1	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
NM_gene17140.t1	Citrus limon cv. Eureka genome v1.0	Citrus limon
Cg3g018850.1	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
g3860.t1	Citrus australis genome v1.0 (UQ)	Citrus australis
Fh3g32410.1	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
gene-KPL71_016474-mRNA1	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
gene-KPL70_016236-mRNA1	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
NM_gene20914.t1	Citrus limon cv. Eureka genome v1.0	Citrus limon
Cms170820.1	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Cau_v1.primary_g16093.t1	Citrus australasica CRC3672 genome v1	Citrus australasica
Cau_v1.alternate_g15196.t1	Citrus australasica CRC3672 genome v1	Citrus australasica

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Egl090330	Egl090330-AZM_v1	Citrus australasica	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Egl090330.1.exon4	Egl090330.1.exon4-AZM_v1	Citrus australasica	exon
Egl090330.1.exon3	Egl090330.1.exon3-AZM_v1	Citrus australasica	exon
Egl090330.1.exon2	Egl090330.1.exon2-AZM_v1	Citrus australasica	exon
Egl090330.1.exon1	Egl090330.1.exon1-AZM_v1	Citrus australasica	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Egl090330.1.utr3.1	Egl090330.1.utr3.1-AZM_v1	Citrus australasica	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Egl090330.1.cds.4	Egl090330.1.cds.4-AZM_v1	Citrus australasica	CDS
Egl090330.1.cds.3	Egl090330.1.cds.3-AZM_v1	Citrus australasica	CDS
Egl090330.1.cds.2	Egl090330.1.cds.2-AZM_v1	Citrus australasica	CDS
Egl090330.1.cds.1	Egl090330.1.cds.1-AZM_v1	Citrus australasica	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Egl090330.1.utr5.1	Egl090330.1.utr5.1-AZM_v1	Citrus australasica	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Egl090330.1-AZM_v1	Egl090330.1-AZM_v1	Citrus australasica	polypeptide
Egl090330.1-AZM_v1	Egl090330.1-AZM_v1-protein	Citrus australasica	polypeptide

Homology

[Close]

BLAST of Egl090330.1 vs. ExPASy TrEMBL
Match: V4T8G2|V4T8G2_CITCL (40S ribosomal protein S18 OS=Citrus clementina OX=85681 GN=CICLE_v10002764mg PE=3 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 6.491e-107
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0

Query:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMIVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
            MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLM+VVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Egl090330.1 vs. ExPASy TrEMBL
Match: A0A067H7X7|A0A067H7X7_CITSI (40S ribosomal protein S18 OS=Citrus sinensis OX=2711 GN=CISIN_1g031787mg PE=3 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 6.491e-107
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0

Query:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMIVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
            MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLM+VVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Egl090330.1 vs. ExPASy TrEMBL
Match: A0A6J1GW85|A0A6J1GW85_CUCMO (40S ribosomal protein S18-like OS=Cucurbita moschata OX=3662 GN=LOC111457987 PE=3 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 2.322e-106
Identity = 149/152 (98.03%), Postives = 152/152 (100.00%), Query Frame = 0

Query:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMIVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
            MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLAN+VCKKADVDMNKRAGEL+AAELDNLM+VVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct:   27 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 178

[Close]

BLAST of Egl090330.1 vs. ExPASy TrEMBL
Match: A0A5D3BZG0|A0A5D3BZG0_CUCME (40S ribosomal protein S18 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001270 PE=3 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 2.835e-106
Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 0

Query:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMIVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
            MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+AAELDNLM+VVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct:   28 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 179

[Close]

BLAST of Egl090330.1 vs. ExPASy TrEMBL
Match: A0A6J1FP38|A0A6J1FP38_CUCMO (40S ribosomal protein S18-like OS=Cucurbita moschata OX=3662 GN=LOC111445638 PE=3 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 4.149e-106
Identity = 149/152 (98.03%), Postives = 152/152 (100.00%), Query Frame = 0

Query:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMIVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
            MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLAN+VCKKADVDMNKRAGEL+AAELDNLM+VVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Egl090330.1 vs. ExPASy TrEMBL
Match: A0A6J1IJ52|A0A6J1IJ52_CUCMA (40S ribosomal protein S18-like OS=Cucurbita maxima OX=3661 GN=LOC111476758 PE=3 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 4.149e-106
Identity = 149/152 (98.03%), Postives = 152/152 (100.00%), Query Frame = 0

Query:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMIVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
            MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLAN+VCKKADVDMNKRAGEL+AAELDNLM+VVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANMVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Egl090330.1 vs. ExPASy TrEMBL
Match: A0A067GW28|A0A067GW28_CITSI (40S ribosomal protein S18 OS=Citrus sinensis OX=2711 GN=CISIN_1g031787mg PE=3 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 4.201e-106
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0

Query:    2 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMIVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
            SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLM+VVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct:    3 SLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 153

[Close]

BLAST of Egl090330.1 vs. ExPASy TrEMBL
Match: A0A6J1EE49|A0A6J1EE49_CUCMO (40S ribosomal protein S18 OS=Cucurbita moschata OX=3662 GN=LOC111433472 PE=3 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 4.945e-106
Identity = 148/152 (97.37%), Postives = 152/152 (100.00%), Query Frame = 0

Query:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMIVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
            MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGEL+AAELDNLM++VANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELTAAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Egl090330.1 vs. ExPASy TrEMBL
Match: A0A6J1IX44|A0A6J1IX44_CUCMA (40S ribosomal protein S18 OS=Cucurbita maxima OX=3661 GN=LOC111480700 PE=3 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 4.945e-106
Identity = 148/152 (97.37%), Postives = 152/152 (100.00%), Query Frame = 0

Query:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMIVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
            MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGEL+AAELDNLM++VANPRQFK+PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELTAAELDNLMVIVANPRQFKVPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Egl090330.1 vs. ExPASy TrEMBL
Match: A0A5A7UWI6|A0A5A7UWI6_CUCME (40S ribosomal protein S18 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1193G00290 PE=3 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 5.485e-106
Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 0

Query:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMIVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
            MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+AAELDNLM+VVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct:   23 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 174

[Close]

BLAST of Egl090330.1 vs. ExPASy Swiss-Prot
Match: RS18_ARATH (Small ribosomal subunit protein uS13z/uS13y/uS13x OS=Arabidopsis thaliana OX=3702 GN=RPS18A PE=1 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 3.977e-108
Identity = 148/152 (97.37%), Postives = 151/152 (99.34%), Query Frame = 0

Query:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMIVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
            MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR
Sbjct:    1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152

[Close]

BLAST of Egl090330.1 vs. ExPASy Swiss-Prot
Match: RS18_BRABE (Small ribosomal subunit protein uS13 OS=Branchiostoma belcheri OX=7741 GN=RPS18 PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 1.687e-88
Identity = 119/152 (78.29%), Postives = 140/152 (92.11%), Query Frame = 0

Query:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMIVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
            MSLV  E FQHILRV+NTN+DG++KIMFALTSIKG+GRR +NIVCKKAD+D++KRAGELS  E++ L+ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N+LD KLR+DLERLKKIR HRGLRHYWGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct:    1 MSLVIPEKFQHILRVMNTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELSDEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152

[Close]

BLAST of Egl090330.1 vs. ExPASy Swiss-Prot
Match: RS18_ARGIR (Small ribosomal subunit protein uS13 OS=Argopecten irradians OX=31199 GN=RPS18 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.223e-87
Identity = 116/152 (76.32%), Postives = 140/152 (92.11%), Query Frame = 0

Query:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMIVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
            M+L+  E FQHILRV+NTN+DGK+KIMFA+T+IKG+GRR AN+VCKKADVD+ KRAGELS  E++ ++ +++NPRQ+KIP+WFLNRQKD KDGKYSQV+SNALD KLR+DLERLKKIR HRGLRHYWGLRVRGQHTKTTGRRG+TVGV+KK+
Sbjct:    1 MALIIPEKFQHILRVMNTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELSEDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMSNALDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVAKKK 152

[Close]

BLAST of Egl090330.1 vs. ExPASy Swiss-Prot
Match: RS18_DANRE (Small ribosomal subunit protein uS13 OS=Danio rerio OX=7955 GN=rps18 PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.090e-83
Identity = 112/152 (73.68%), Postives = 137/152 (90.13%), Query Frame = 0

Query:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMIVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+NKRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

[Close]

BLAST of Egl090330.1 vs. ExPASy Swiss-Prot
Match: RS18_ICTPU (Small ribosomal subunit protein uS13 OS=Ictalurus punctatus OX=7998 GN=rps18 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.271e-82
Identity = 111/152 (73.03%), Postives = 137/152 (90.13%), Query Frame = 0

Query:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMIVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D++KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

[Close]

BLAST of Egl090330.1 vs. ExPASy Swiss-Prot
Match: RS18_RAT (Small ribosomal subunit protein uS13 OS=Rattus norvegicus OX=10116 GN=Rps18 PE=1 SV=3)

HSP 1 Score: 242.662 bits (618), Expect = 1.299e-82
Identity = 111/152 (73.03%), Postives = 136/152 (89.47%), Query Frame = 0

Query:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMIVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

[Close]

BLAST of Egl090330.1 vs. ExPASy Swiss-Prot
Match: RS18_PIG (Small ribosomal subunit protein uS13 OS=Sus scrofa OX=9823 GN=RPS18 PE=1 SV=3)

HSP 1 Score: 242.662 bits (618), Expect = 1.299e-82
Identity = 111/152 (73.03%), Postives = 136/152 (89.47%), Query Frame = 0

Query:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMIVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

[Close]

BLAST of Egl090330.1 vs. ExPASy Swiss-Prot
Match: RS18_MOUSE (Small ribosomal subunit protein uS13 OS=Mus musculus OX=10090 GN=Rps18 PE=1 SV=3)

HSP 1 Score: 242.662 bits (618), Expect = 1.299e-82
Identity = 111/152 (73.03%), Postives = 136/152 (89.47%), Query Frame = 0

Query:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMIVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

[Close]

BLAST of Egl090330.1 vs. ExPASy Swiss-Prot
Match: RS18_HUMAN (Small ribosomal subunit protein uS13 OS=Homo sapiens OX=9606 GN=RPS18 PE=1 SV=3)

HSP 1 Score: 242.662 bits (618), Expect = 1.299e-82
Identity = 111/152 (73.03%), Postives = 136/152 (89.47%), Query Frame = 0

Query:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMIVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

[Close]

BLAST of Egl090330.1 vs. ExPASy Swiss-Prot
Match: RS18_CAPHI (Small ribosomal subunit protein uS13 OS=Capra hircus OX=9925 GN=RPS18 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.299e-82
Identity = 111/152 (73.03%), Postives = 136/152 (89.47%), Query Frame = 0

Query:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMIVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQHTKTTGRRG+TVGVSKK+
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152

[Close]

BLAST of Egl090330.1 vs. Araport11
Match: | (Symbols: RPS18C | S18 ribosomal protein | chr4:6173818-6174963 FORWARD LENGTH=152)

HSP 1 Score: 307.76 bits (787), Expect = 3.037e-109
Identity = 149/153 (97.39%), Postives = 152/153 (99.35%), Query Frame = 0

Query:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMIVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR* 153
            MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR*
Sbjct:    1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR* 153

[Close]

BLAST of Egl090330.1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:12370285-12371465 REVERSE LENGTH=152)

HSP 1 Score: 307.76 bits (787), Expect = 3.037e-109
Identity = 149/153 (97.39%), Postives = 152/153 (99.35%), Query Frame = 0

Query:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMIVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR* 153
            MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR*
Sbjct:    1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR* 153

[Close]

BLAST of Egl090330.1 vs. Araport11
Match: | (Symbols: RPS18A, PFL, PFL1 | POINTED FIRST LEAVES, POINTED FIRST LEAVES 1, 40S RIBOSOMAL PROTEIN S18 | chr1:8067990-8069163 FORWARD LENGTH=152)

HSP 1 Score: 307.76 bits (787), Expect = 3.037e-109
Identity = 149/153 (97.39%), Postives = 152/153 (99.35%), Query Frame = 0

Query:    1 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMIVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR* 153
            MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR*
Sbjct:    1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR* 153

The following BLAST results are available for this feature:

BLAST of Egl090330.1 vs. ExPASy TrEMBL
BLAST of Egl090330.1 vs. ExPASy Swiss-Prot
BLAST of Egl090330.1 vs. Araport11

BLAST of Egl090330.1 vs. ExPASy TrEMBL
Analysis Date: 2024-02-02 (Blastp of Citrus australasica cv. AZM v1.0 proteins vs UniProt TrEMBL)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
V4T8G2\|V4T8G2_CITCL	6.491e-107	99.34	40S ribosomal protein S18 OS=Citrus clementina OX=...	[more]
A0A067H7X7\|A0A067H7X7_CITSI	6.491e-107	99.34	40S ribosomal protein S18 OS=Citrus sinensis OX=27...	[more]
A0A6J1GW85\|A0A6J1GW85_CUCMO	2.322e-106	98.03	40S ribosomal protein S18-like OS=Cucurbita moscha...	[more]
A0A5D3BZG0\|A0A5D3BZG0_CUCME	2.835e-106	98.03	40S ribosomal protein S18 isoform X1 OS=Cucumis me...	[more]
A0A6J1FP38\|A0A6J1FP38_CUCMO	4.149e-106	98.03	40S ribosomal protein S18-like OS=Cucurbita moscha...	[more]
A0A6J1IJ52\|A0A6J1IJ52_CUCMA	4.149e-106	98.03	40S ribosomal protein S18-like OS=Cucurbita maxima...	[more]
A0A067GW28\|A0A067GW28_CITSI	4.201e-106	99.34	40S ribosomal protein S18 OS=Citrus sinensis OX=27...	[more]
A0A6J1EE49\|A0A6J1EE49_CUCMO	4.945e-106	97.37	40S ribosomal protein S18 OS=Cucurbita moschata OX...	[more]
A0A6J1IX44\|A0A6J1IX44_CUCMA	4.945e-106	97.37	40S ribosomal protein S18 OS=Cucurbita maxima OX=3...	[more]
A0A5A7UWI6\|A0A5A7UWI6_CUCME	5.485e-106	98.03	40S ribosomal protein S18 isoform X1 OS=Cucumis me...	[more]

BLAST of Egl090330.1 vs. ExPASy Swiss-Prot
Analysis Date: 2024-02-02 (Blastp of Citrus australasica cv. AZM v1.0 proteins vs UniProt Swissprot)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
RS18_ARATH	3.977e-108	97.37	Small ribosomal subunit protein uS13z/uS13y/uS13x ...	[more]
RS18_BRABE	1.687e-88	78.29	Small ribosomal subunit protein uS13 OS=Branchiost...	[more]
RS18_ARGIR	3.223e-87	76.32	Small ribosomal subunit protein uS13 OS=Argopecten...	[more]
RS18_DANRE	3.090e-83	73.68	Small ribosomal subunit protein uS13 OS=Danio reri...	[more]
RS18_ICTPU	1.271e-82	73.03	Small ribosomal subunit protein uS13 OS=Ictalurus ...	[more]
RS18_RAT	1.299e-82	73.03	Small ribosomal subunit protein uS13 OS=Rattus nor...	[more]
RS18_PIG	1.299e-82	73.03	Small ribosomal subunit protein uS13 OS=Sus scrofa...	[more]
RS18_MOUSE	1.299e-82	73.03	Small ribosomal subunit protein uS13 OS=Mus muscul...	[more]
RS18_HUMAN	1.299e-82	73.03	Small ribosomal subunit protein uS13 OS=Homo sapie...	[more]
RS18_CAPHI	1.299e-82	73.03	Small ribosomal subunit protein uS13 OS=Capra hirc...	[more]

BLAST of Egl090330.1 vs. Araport11
Analysis Date: 2024-02-02 (Blastp of Citrus australasica cv. AZM v1.0 proteins vs Araport11)
Total hits: 3

Position :

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Match Name	E-value	Identity	Description
\|	3.037e-109	97.39	Symbols: RPS18C \| S18 ribosomal protein \| chr4:617...	[more]
\|	3.037e-109	97.39	Symbols: no symbol available \| no full name availa...	[more]
\|	3.037e-109	97.39	Symbols: RPS18A, PFL, PFL1 \| POINTED FIRST LEAVES,...	[more]

InterPro

Analysis Name: InterProScan Analysis for Citrus australasica cv. AZM v1.0 proteins
Date Performed: 2024-02-02

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	FUNFAM	G3DSA:1.10.8.50:FF:000002		coord: 1..80 e-value: 6.7E-43 score: 146.1
None	No IPR available	FUNFAM	G3DSA:4.10.910.10:FF:000002		coord: 92..143 e-value: 4.0E-33 score: 114.9
None	No IPR available	GENE3D	1.10.8.50		coord: 1..80 e-value: 5.3E-35 score: 121.5
None	No IPR available	PANTHER	PTHR10871	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	coord: 6..152
None	No IPR available	PROSITE	PS50159	RIBOSOMAL_S13_2	coord: 15..145 score: 34.661545
IPR027437	Small ribosomal subunit protein uS13, C-terminal	GENE3D	4.10.910.10	30s ribosomal protein s13, domain 2	coord: 92..142 e-value: 1.4E-28 score: 100.4
IPR001892	Small ribosomal subunit protein uS13	PIRSF	PIRSF002134	RPS13p_RPS13a_RPS18e_RPS13o	coord: 4..152 e-value: 1.9E-41 score: 134.2
IPR001892	Small ribosomal subunit protein uS13	PFAM	PF00416	Ribosomal_S13	coord: 14..142 e-value: 2.7E-53 score: 191.2
IPR001892	Small ribosomal subunit protein uS13	HAMAP	MF_01315	Ribosomal_S13_S18	coord: 12..152 score: 22.670509
IPR010979	Small ribosomal subunit protein uS13-like, H2TH	SUPERFAMILY	46946	S13-like H2TH domain	coord: 13..152

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at contig100:4124434..4126423-
coding sequence from alignment at contig100:4124434..4126423-

mRNA sequence

>Egl090330.1-AZM_v1 ID=Egl090330.1-AZM_v1; Name=Egl090330.1; organism=Citrus australasica; type=mRNA; length=459bp
ATGTCTCTGGTGGCGAACGAAGATTTTCAGCACATTTTGCGTGTGCTGAA
CACTAACGTCGACGGGAAGCAGAAGATTATGTTTGCCCTTACTTCAATTA
AGGGTATTGGAAGGCGACTGGCTAACATCGTTTGCAAGAAAGCTGATGTT
GACATGAACAAGAGGGCTGGTGAACTATCTGCTGCTGAACTTGACAATCT
CATGATCGTTGTTGCAAATCCCCGACAGTTTAAAATCCCTGACTGGTTCT
TGAACAGACAGAAGGATTACAAAGATGGAAAGTATTCTCAGGTTGTATCC
AATGCACTGGACATGAAGTTGAGAGATGATTTGGAGCGTCTGAAGAAGAT
CAGGAACCACCGTGGTCTCAGGCACTACTGGGGTCTTCGTGTCCGTGGAC
AACACACCAAGACCACCGGTCGTCGTGGAAAGACTGTTGGTGTCTCCAAG
AAGCGTTGA

protein sequence of Egl090330.1-AZM_v1

>Egl090330.1-AZM_v1 ID=Egl090330.1-AZM_v1; Name=Egl090330.1-AZM_v1; organism=Citrus australasica; type=polypeptide; length=153bp
MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADV
DMNKRAGELSAAELDNLMIVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS
NALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSK
KR*

mRNA from alignment at contig100:4124434..4126423-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=1990bp; location=Sequence derived from: contig100:4124434..4126423- (Citrus australasica
GGGCACAATCGTCAGAAAGCAACAAAAACCCTAAAAAGAGTGAAGCAATT
GCATCATATATAAAGAACTTAAAAAACCCTAAGCTGACTTCTCAGTTGGC
TTGGCTACTTGCTGCAGCTTCATCTGTCGCCGAAGAGCCTCTCTTCTCTT
CATCATCAATCCTCACAATCGAAAATGGTAAGTGGGTTCTCAATTTATCG
CCTTAATCTTCTGAAAAGATTTCATCTTTTTCTATTATCTGGGATTTTGT
TCTTTGGTTTGAATATCGATTAATTTTATGTGGGTTTTGATTTTTGAATG
AAGTCTCTGGTGGCGAACGAAGATTTTCAGCACATTTTGCGTGTGCTGAA
CACTAACGTCGACGGGAAGCAGAAGATTATGTTTGCCCTTACTTCAATTA
AGGGTATTGGAAGGCGACTGGCTAACATCGTTTGCAAGAAAGCTGATGTT
GACATGAACAAGAGGTCTGCCTTTTCTTCTTTTTGTATATGTTTTGCTGC
TGTAAAAAGGAAAAAAAATTAACTCATGTATGTCTAAGGTTTTGCTTCGG
TGAATATGGTACTTGTGTTTTCCTTCAGATGCTTATGTGGTTGTTTGGGA
CATTATGCAGACTTTAGTTAAGTTAGGTTTCGAGATCGAGATTTTGTTGG
ATGAAATCGTTAGTTGTCAAGTATAATTGGGTTGGCATTGGAAAACATTA
GTTGCTAAGAAAAAGTGTCTTTACGATTTAGAAACACATCAACGGGTGTT
TGTAAACCCATTCTTAATTTAGAGGAAAGTTTGAAAAATGTTTTTAAGAA
TATTTGAAGAGATCTACTTTTTATGACATCTCTGTAGTGTTGATTTTATG
TTGTTTCTTTGTGTTGTTTCATGGCCATGTCCATACAAGGATGTCTTCTG
GTGTATTTGACAGGTTCACTTGAATGAAGTGTTTGATTTGCCGTGTTATA
AAACTTAACATGATGTACCATATTGGCTTTCAGGGCTGGTGAACTATCTG
CTGCTGAACTTGACAATCTCATGATCGTTGTTGCAAATCCCCGACAGTTT
AAAATCCCTGACTGGTTCTTGAACAGACAGAAGGATTACAAAGATGGAAA
GTATTCTCAGGTTGTATCCAATGCACTGGACATGAAGTTGAGAGATGATT
TGGAGCGTCTGAAGAAGATCAGGTAACTTTTTCTTGCCATGTCTTAGTTT
GATGATTGGATTTATGGTCAGCTGCTCCCACAAAATTGTTTTAAGATGTT
TATAAGTTCAAAGGAAGGAATAAATTTTGTTTGTACTTATGTCTTGAGAA
GGCTATTTTGTGATGCTTTTAAAACATAACTGAGCATCCTTCTGAAGTAG
AATTGTTGCAATTCAATGCTGAGATACTATGCTCCTGCGCCCGACTAGAC
TAACTGAATATTGGGGTATGACATGAAGCAATTAAAACATAAAATATTAG
CACTTCTCCATTACAGATGGTCTCTTAAGCGAACAAAAGACTAACTGTAC
TGGGTTAAGGCTGTATAGTAGTTATCTTTCAAAAACATCTCAGGAACTCT
CCTCTTGCCTTGTAAATATTCTTTTATTTTGTACAAGCTGTGTTCTGAAA
CTTTTGGCCAATGAAAAATACCTACTAATGTCACATCTTTCATGCAGGAA
CCACCGTGGTCTCAGGCACTACTGGGGTCTTCGTGTCCGTGGACAACACA
CCAAGACCACCGGTCGTCGTGGAAAGACTGTTGGTGTCTCCAAGAAGCGT
TGAGCTGTCCTTTATCAATGTTTTGAACAATCTAGACACATGTTCAGGAA
GAGTTTGGACTTGCTATTGCTGAACATTTGCATCAGCCAATATTAGATTT
ATTTTCTTTTCTTTGGATGGGTTTTAAGCATTTGAACTGTCTGTCTTTTA
TCTATTATTTTCTCTATGGTAATATTTTTATTCAGATGTTTTGCAACATA
TATTTCATCTCCCTCTTTTATCTCATTGAATTTTGAGCTC

Coding sequence (CDS) from alignment at contig100:4124434..4126423-

>Egl090330.1-AZM_v1 ID=Egl090330.1-AZM_v1; Name=Egl090330.1; organism=Citrus australasica; type=CDS; length=459bp; location=Sequence derived from: contig100:4124434..4126423- (Citrus australasica
ATGTCTCTGGTGGCGAACGAAGATTTTCAGCACATTTTGCGTGTGCTGAA
CACTAACGTCGACGGGAAGCAGAAGATTATGTTTGCCCTTACTTCAATTA
AGGGTATTGGAAGGCGACTGGCTAACATCGTTTGCAAGAAAGCTGATGTT
GACATGAACAAGAGGGCTGGTGAACTATCTGCTGCTGAACTTGACAATCT
CATGATCGTTGTTGCAAATCCCCGACAGTTTAAAATCCCTGACTGGTTCT
TGAACAGACAGAAGGATTACAAAGATGGAAAGTATTCTCAGGTTGTATCC
AATGCACTGGACATGAAGTTGAGAGATGATTTGGAGCGTCTGAAGAAGAT
CAGGAACCACCGTGGTCTCAGGCACTACTGGGGTCTTCGTGTCCGTGGAC
AACACACCAAGACCACCGGTCGTCGTGGAAAGACTGTTGGTGTCTCCAAG
AAGCGTTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR027437	Rbsml_uS13_C
IPR001892	Ribosomal_uS13
IPR010979	Ribosomal_uS13-like_H2TH

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003723	RNA binding
GO:0003676	nucleic acid binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome