Egl132330.1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Egl132330.1 vs. ExPASy TrEMBL
Match: A0A2H5N271|A0A2H5N271_CITUN (LysM domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_010890 PE=4 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 5.096e-48 Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0 Query: 1 MASNKTSVFRSLALVLALLLIVSMAESRTFAGGLETSLPTCDLVYGAQEGDTCSDVTEKFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA 91 MA+NKTSVFRSLALVLALLLIVSMAESRTFAGGLETSLPTCD VYGAQEGDTCS V E+FNLSTDVFLAINPNINCDAIFVGQWLCVAGSA Sbjct: 1 MATNKTSVFRSLALVLALLLIVSMAESRTFAGGLETSLPTCDSVYGAQEGDTCSVVAEEFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA 91
BLAST of Egl132330.1 vs. ExPASy TrEMBL
Match: V4TPJ9|V4TPJ9_CITCL (LysM domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10017864mg PE=4 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 5.096e-48 Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 0 Query: 1 MASNKTSVFRSLALVLALLLIVSMAESRTFAGGLETSLPTCDLVYGAQEGDTCSDVTEKFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA 91 MA+NKTSVFRSLALVLALLLIVSMAESRTFAGGLETSLPTCD VYGAQEGDTCS V E+FNLSTDVFLAINPNINCDAIFVGQWLCVAGSA Sbjct: 1 MATNKTSVFRSLALVLALLLIVSMAESRTFAGGLETSLPTCDSVYGAQEGDTCSVVAEEFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA 91
BLAST of Egl132330.1 vs. ExPASy TrEMBL
Match: A0A067G7V7|A0A067G7V7_CITSI (LysM domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g040436mg PE=4 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 7.161e-48 Identity = 84/91 (92.31%), Postives = 89/91 (97.80%), Query Frame = 0 Query: 1 MASNKTSVFRSLALVLALLLIVSMAESRTFAGGLETSLPTCDLVYGAQEGDTCSDVTEKFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA 91 MASNKTS+FR+LALVLA+LLIVSMAESRTFAGGLETS PTCD VYGAQEGDTCS+VTE+FNLSTDVFLAINPNINCDAIFVGQWLCVAGSA Sbjct: 1 MASNKTSLFRNLALVLAVLLIVSMAESRTFAGGLETSPPTCDSVYGAQEGDTCSNVTEEFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA 91
BLAST of Egl132330.1 vs. ExPASy TrEMBL
Match: A0A2H5N037|A0A2H5N037_CITUN (LysM domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_275080 PE=4 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 3.796e-42 Identity = 70/91 (76.92%), Postives = 80/91 (87.91%), Query Frame = 0 Query: 1 MASNKTSVFRSLALVLALLLIVSMAESRTFAGGLETSLPTCDLVYGAQEGDTCSDVTEKFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA 91 MAS KTSVF +LAL +ALLLIVS+AESR FA GL S PTCD VYGAQEGDTC DV++KFNL+ ++FLAINPNI+CDA+FVGQWLCVAGSA Sbjct: 1 MASYKTSVFCNLALFVALLLIVSVAESRNFAVGLVKSPPTCDSVYGAQEGDTCFDVSQKFNLTNELFLAINPNIDCDAVFVGQWLCVAGSA 91
BLAST of Egl132330.1 vs. ExPASy TrEMBL
Match: V4SX50|V4SX50_CITCL (LysM domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10003665mg PE=4 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 4.054e-42 Identity = 70/91 (76.92%), Postives = 80/91 (87.91%), Query Frame = 0 Query: 1 MASNKTSVFRSLALVLALLLIVSMAESRTFAGGLETSLPTCDLVYGAQEGDTCSDVTEKFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA 91 MAS KTSVF +LAL +ALLLIVS+AESR FA GL + PTCD VYGAQEGDTC DV++KFNLS ++FLAINPNI+CDA+FVGQWLCVAGSA Sbjct: 1 MASYKTSVFCNLALFVALLLIVSVAESRNFAVGLVKAPPTCDSVYGAQEGDTCFDVSQKFNLSNELFLAINPNIDCDAVFVGQWLCVAGSA 91
BLAST of Egl132330.1 vs. ExPASy TrEMBL
Match: V4V0U3|V4V0U3_CITCL (LysM domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10003398mg PE=4 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 3.739e-37 Identity = 71/91 (78.02%), Postives = 77/91 (84.62%), Query Frame = 0 Query: 1 MASNKTSVFRSLALVLALLLIVSMAESRTFAGGLETSLPTCDLVYGAQEGDTCSDVTEKFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA 91 MAS K SVFR LALVLALLLIVSMAES FA GL S PTCD YGAQEGDTCSDV++KF LS ++FLAINPNINCDA+FVGQWLC+ GSA Sbjct: 1 MASYKNSVFRKLALVLALLLIVSMAESSNFAVGLVKSPPTCDSAYGAQEGDTCSDVSKKFKLSNELFLAINPNINCDAVFVGQWLCIVGSA 91
BLAST of Egl132330.1 vs. ExPASy TrEMBL
Match: A0A2H5QNM9|A0A2H5QNM9_CITUN (LysM domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_247130 PE=4 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 6.542e-37 Identity = 71/91 (78.02%), Postives = 78/91 (85.71%), Query Frame = 0 Query: 1 MASNKTSVFRSLALVLALLLIVSMAESRTFAGGLETSLPTCDLVYGAQEGDTCSDVTEKFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA 91 MAS K SVFR+LALVLALLLIVSMAES FA G S PTCD VYGAQEGDTC DV+++FNLS + FLAINPNINCDA+FVGQWLC+AGSA Sbjct: 1 MASYKNSVFRNLALVLALLLIVSMAESSNFAVGFVKSPPTCDSVYGAQEGDTCFDVSKEFNLSNEFFLAINPNINCDAVFVGQWLCIAGSA 91
BLAST of Egl132330.1 vs. ExPASy TrEMBL
Match: V4THS3|V4THS3_CITCL (LysM domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10033348mg PE=4 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 4.399e-34 Identity = 75/92 (81.52%), Postives = 81/92 (88.04%), Query Frame = 0 Query: 1 MASNKTSVFRSLALVLALLLIVSMAESRTFA-GGLETSLPTCDLVYGAQEGDTCSDVTEKFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA 91 MASNKTSVFRSLALVLALLLIVS+AESRT + GG SLPTCD VYG QEGDTC DV ++FNLST+ F AINPN+NCDAIFVGQWLCVAGSA Sbjct: 1 MASNKTSVFRSLALVLALLLIVSLAESRTLSVGGAVKSLPTCDSVYGTQEGDTCFDVAKEFNLSTEFFSAINPNLNCDAIFVGQWLCVAGSA 92
BLAST of Egl132330.1 vs. ExPASy TrEMBL
Match: A0A2H5NVR7|A0A2H5NVR7_CITUN (LysM domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_080570 PE=4 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 5.980e-33 Identity = 74/92 (80.43%), Postives = 80/92 (86.96%), Query Frame = 0 Query: 1 MASNKTSVFRSLALVLALLLIVSMAESRTFA-GGLETSLPTCDLVYGAQEGDTCSDVTEKFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA 91 MASNKTSVFRSLALVLALLLIVS+AESRT + GG SLPTCD VYG QEGDTC DV + F+LST+ F AINPN+NCDAIFVGQWLCVAGSA Sbjct: 1 MASNKTSVFRSLALVLALLLIVSLAESRTLSVGGAVKSLPTCDSVYGTQEGDTCFDVAKAFSLSTEFFSAINPNLNCDAIFVGQWLCVAGSA 92
BLAST of Egl132330.1 vs. ExPASy TrEMBL
Match: A0A314Y9M7|A0A314Y9M7_PRUYE (LysM domain-containing protein isoform X2 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_21884 PE=4 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.682e-29 Identity = 52/91 (57.14%), Postives = 67/91 (73.63%), Query Frame = 0 Query: 2 ASNKTSVFRSLALVLALLLIVSMAESRTFAGGL--ETSLPTCDLVYGAQEGDTCSDVTEKFNLSTDVFLAINPNINCDAIFVGQWLCVAGS 90 A +K ++ +L LVL+L+L+++ AESR G E + P CD VYGA+EGDTC V EKFNLS+D FL+INPNINCD+ FVGQWLC G+ Sbjct: 4 AGSKVALILNLILVLSLVLMIATAESRQLGIGFGKEETSPVCDSVYGAEEGDTCGSVIEKFNLSSDFFLSINPNINCDSFFVGQWLCTQGT 94 The following BLAST results are available for this feature:
BLAST of Egl132330.1 vs. ExPASy TrEMBL
Analysis Date: 2024-02-02 (Blastp of Citrus australasica cv. AZM v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of Egl132330.1 vs. ExPASy TrEMBL
Analysis Date: 2024-02-02 (Blastp of Citrus australasica cv. AZM v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of Egl132330.1 vs. ExPASy TrEMBL
Analysis Date: 2024-02-02 (Blastp of Citrus australasica cv. AZM v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus australasica cv. AZM v1.0 proteins
Date Performed: 2024-02-02 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Egl132330.1-AZM_v1 ID=Egl132330.1-AZM_v1; Name=Egl132330.1; organism=Citrus australasica; type=mRNA; length=276bpback to top protein sequence of Egl132330.1-AZM_v1 >Egl132330.1-AZM_v1 ID=Egl132330.1-AZM_v1; Name=Egl132330.1-AZM_v1; organism=Citrus australasica; type=polypeptide; length=92bpback to top mRNA from alignment at contig86:517086..517496- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=411bp; location=Sequence derived from: contig86:517086..517496- (Citrus australasicaback to top Coding sequence (CDS) from alignment at contig86:517086..517496- >Egl132330.1-AZM_v1 ID=Egl132330.1-AZM_v1; Name=Egl132330.1; organism=Citrus australasica; type=CDS; length=276bp; location=Sequence derived from: contig86:517086..517496- (Citrus australasicaback to top |