Egl198220.7 | Citrus Genome Database

Transcript Overview


Name	Egl198220.7
Unique Name	Egl198220.7-AZM_v1
Type	mRNA
Organism	Citrus australasica (Australian finger lime)
Sequence length	468

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus australasica cv. AZM genome v1.0	2023-12-21
InterProScan Analysis for Citrus australasica cv. AZM v1.0 proteins	2024-02-02
Blastp of Citrus australasica cv. AZM v1.0 proteins vs UniProt TrEMBL	2024-02-02
Blastp of Citrus australasica cv. AZM v1.0 proteins vs UniProt Swissprot	2024-02-02
Blastp of Citrus australasica cv. AZM v1.0 proteins vs Araport11	2024-02-02

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
caacmmR258	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
caaccR234	Citrus clementina genome v1.0 (JGI)	Citrus clementina
caacauR255	Citrus australis genome v1.0 (UQ)	Citrus australis
caaccrR0420	Citrus australasica CRC3672 genome v1	Citrus australasica
caaccrR0423	Citrus australasica CRC3672 genome v1	Citrus australasica
caacmR263	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
caacleR0429	Citrus limon cv. Eureka genome v1.0	Citrus limon
caacleR0430	Citrus limon cv. Eureka genome v1.0	Citrus limon
caacsR281	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
caacmjR256	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
caadvaR191	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
caadvbR187	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
caaswoR236	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
caafhsR278	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
caazkR287	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Egl198220	Egl198220-AZM_v1	Citrus australasica	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Egl198220.7.utr5.1	Egl198220.7.utr5.1-AZM_v1	Citrus australasica	five_prime_UTR
Egl198220.7.utr5.2	Egl198220.7.utr5.2-AZM_v1	Citrus australasica	five_prime_UTR
Egl198220.7.utr5.3	Egl198220.7.utr5.3-AZM_v1	Citrus australasica	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Egl198220.7.exon1	Egl198220.7.exon1-AZM_v1	Citrus australasica	exon
Egl198220.7.exon2	Egl198220.7.exon2-AZM_v1	Citrus australasica	exon
Egl198220.7.exon3	Egl198220.7.exon3-AZM_v1	Citrus australasica	exon
Egl198220.7.exon4	Egl198220.7.exon4-AZM_v1	Citrus australasica	exon
Egl198220.7.exon5	Egl198220.7.exon5-AZM_v1	Citrus australasica	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Egl198220.7.cds.1	Egl198220.7.cds.1-AZM_v1	Citrus australasica	CDS
Egl198220.7.cds.2	Egl198220.7.cds.2-AZM_v1	Citrus australasica	CDS
Egl198220.7.cds.3	Egl198220.7.cds.3-AZM_v1	Citrus australasica	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Egl198220.7.utr3.1	Egl198220.7.utr3.1-AZM_v1	Citrus australasica	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Egl198220.7-AZM_v1	Egl198220.7-AZM_v1	Citrus australasica	polypeptide
Egl198220.7-AZM_v1	Egl198220.7-AZM_v1-protein	Citrus australasica	polypeptide

Homology

[Close]

BLAST of Egl198220.7 vs. ExPASy TrEMBL
Match: A0A067GNH6|A0A067GNH6_CITSI (TRAF-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g028830mg PE=4 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 2.361e-103
Identity = 146/150 (97.33%), Postives = 146/150 (97.33%), Query Frame = 0

Query:    6 DFHAFEQVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRNARAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFFQRKTETSQVH 155
              HAFEQVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRN RAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFF RKTETSQVH
Sbjct:    9 SLHAFEQVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRNVRAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFFPRKTETSQVH 158

[Close]

BLAST of Egl198220.7 vs. ExPASy TrEMBL
Match: A0A2H5P6Y2|A0A2H5P6Y2_CITUN (TRAF-type domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_109400 PE=4 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 1.509e-100
Identity = 143/153 (93.46%), Postives = 146/153 (95.42%), Query Frame = 0

Query:    3 SVIDFHAFEQVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRNARAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFFQRKTETSQVH 155
            S ++     +VACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRN RAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFFQRKTETSQVH
Sbjct:   67 SQLEVGGVLKVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRNVRAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFFQRKTETSQVH 219

[Close]

BLAST of Egl198220.7 vs. ExPASy TrEMBL
Match: A0A2H5P6X9|A0A2H5P6X9_CITUN (TRAF-type domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_109390 PE=4 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 1.439e-99
Identity = 141/152 (92.76%), Postives = 145/152 (95.39%), Query Frame = 0

Query:    3 SVIDFHAFEQVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRNARAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFFQRKTETSQV 154
            S ++     +VACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRN RAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFFQRKTETSQ+
Sbjct:   11 SQLEVGGVLKVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRNVRAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFFQRKTETSQL 162

[Close]

BLAST of Egl198220.7 vs. ExPASy TrEMBL
Match: A0A067H137|A0A067H137_CITSI (TRAF-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g028830mg PE=4 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 8.513e-99
Identity = 141/143 (98.60%), Postives = 141/143 (98.60%), Query Frame = 0

Query:   13 VACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRNARAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFFQRKTETSQVH 155
            VACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRN RAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFF RKTETSQVH
Sbjct:   61 VACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRNVRAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFFPRKTETSQVH 203

[Close]

BLAST of Egl198220.7 vs. ExPASy TrEMBL
Match: A0A2H5P6W7|A0A2H5P6W7_CITUN (TRAF-type domain-containing protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_109390 PE=4 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 1.606e-98
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 0

Query:   13 VACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRNARAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFFQRKTETSQV 154
            VACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRN RAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFFQRKTETSQ+
Sbjct:  111 VACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRNVRAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFFQRKTETSQL 252

[Close]

BLAST of Egl198220.7 vs. ExPASy TrEMBL
Match: V4T1K3|V4T1K3_CITCL (TRAF-type domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10002525mg PE=4 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 4.656e-98
Identity = 140/143 (97.90%), Postives = 140/143 (97.90%), Query Frame = 0

Query:   13 VACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRNARAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFFQRKTETSQVH 155
            VACSQCSETMEREILAIHKGE CPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRN RAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFF RKTETSQVH
Sbjct:   61 VACSQCSETMEREILAIHKGEKCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRNVRAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFFPRKTETSQVH 203

[Close]

BLAST of Egl198220.7 vs. ExPASy TrEMBL
Match: A0A6P6AUD9|A0A6P6AUD9_DURZI (XIAP-associated factor 1-like OS=Durio zibethinus OX=66656 GN=LOC111312478 PE=4 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.025e-81
Identity = 122/143 (85.31%), Postives = 129/143 (90.21%), Query Frame = 0

Query:   13 VACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRNARAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFFQRKTETSQVH 155
            VACS CSETMEREILAIHKGENCPQRIVTC+FCEFPLPA+DLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTG+PEN VGSSR+ RAAE DQGA RR     P+EF R R L TIAITGIAV+LGSLFFQ+KTETSQVH
Sbjct:   61 VACSLCSETMEREILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGIPENIVGSSRDVRAAERDQGAQRR----QPSEFSR-RLLFTIAITGIAVILGSLFFQKKTETSQVH 198

[Close]

BLAST of Egl198220.7 vs. ExPASy TrEMBL
Match: A0A6P4ACW2|A0A6P4ACW2_ZIZJJ (XIAP-associated factor 1 OS=Ziziphus jujuba OX=326968 GN=LOC107421365 PE=4 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 2.432e-80
Identity = 118/146 (80.82%), Postives = 126/146 (86.30%), Query Frame = 0

Query:   10 FEQVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRNARAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFFQRKTETSQVH 155
             EQV+CS CSETMEREIL IHKGENCPQRIVTC+FCEFPLPA+DLAEHQEVCGNRTELCHLCN+YIRLRERY HE+RC GV ENTVGSSR+ R  E DQGA RR     PNEF RKR + TIAITGIAV+LGSLFFQRKTE SQVH
Sbjct:   15 LEQVSCSLCSETMEREILPIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCNKYIRLRERYAHETRCNGVSENTVGSSRDVRPTERDQGAQRR----QPNEFSRKRLIFTIAITGIAVILGSLFFQRKTENSQVH 156

[Close]

BLAST of Egl198220.7 vs. ExPASy TrEMBL
Match: A0A061FFL4|A0A061FFL4_THECC (TRAF-type zinc finger domain-containing protein 1 isoform 5 OS=Theobroma cacao OX=3641 GN=TCM_034548 PE=4 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 9.749e-80
Identity = 120/143 (83.92%), Postives = 128/143 (89.51%), Query Frame = 0

Query:   13 VACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRNARAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFFQRKTETSQVH 155
            VACS CSETMEREILAIHKGENCPQRIVTC+FCEFPLPA+DLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRC+GV EN VGSSR+ RAAE +QGA RR  P    E+ R+R L TIAITGIAVLLGSLFFQ+KTETSQVH
Sbjct:   65 VACSLCSETMEREILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCSGVAEN-VGSSRDVRAAEREQGAQRRQPP----EYSRRRLLFTIAITGIAVLLGSLFFQKKTETSQVH 202

[Close]

BLAST of Egl198220.7 vs. ExPASy TrEMBL
Match: A0A5C7H6Q0|A0A5C7H6Q0_9ROSI (TRAF-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_021800 PE=4 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.148e-79
Identity = 118/149 (79.19%), Postives = 128/149 (85.91%), Query Frame = 0

Query:    7 FHAFEQVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRNARAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFFQRKTETSQVH 155
            F+    VACSQCSETMEREILAIHKGENCPQRIVTC FCEFPLPA+DLAEHQEVCGNRTELCHLCN+YIRLRERYNHE+RCTG+P++TVGSSR+ R  E D+G  RR     PNEF RKR   TIAITGIAVLLGSLFFQRKTE+ QVH
Sbjct:   56 FNTHAPVACSQCSETMEREILAIHKGENCPQRIVTCQFCEFPLPAIDLAEHQEVCGNRTELCHLCNKYIRLRERYNHETRCTGLPDSTVGSSRDVRPVERDRGPQRR----EPNEFSRKRLFFTIAITGIAVLLGSLFFQRKTESGQVH 200

[Close]

BLAST of Egl198220.7 vs. ExPASy Swiss-Prot
Match: XAF1_HUMAN (XIAP-associated factor 1 OS=Homo sapiens OX=9606 GN=XAF1 PE=1 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 4.283e-11
Identity = 34/113 (30.09%), Postives = 53/113 (46.90%), Query Frame = 0

Query:   11 EQVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRNARAAESDQGAHRRPAPPPPNEFY 123
            +QV C+ C ++M++  L  HK   C +R V C FC+  +    L  H+  CG+RTELC  C ++I  R    H   C    +  +G      A E +   H      P N+++
Sbjct:   55 QQVGCTMCQQSMQKSSLEFHKANECQERPVECKFCKLDMQLSKLELHESYCGSRTELCQGCGQFIMHRMLAQHRDVCRS-EQAQLGKGERISAPEREIYCHYCNQMIPENKYF 166

[Close]

BLAST of Egl198220.7 vs. ExPASy Swiss-Prot
Match: TRAD1_RAT (TRAF-type zinc finger domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Trafd1 PE=1 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 9.080e-11
Identity = 34/93 (36.56%), Postives = 48/93 (51.61%), Query Frame = 0

Query:    3 SVIDFHAFE---QVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPE 92
            S +D H      QV C +C++ +E+  L  H    CP R+  C  C+  L  V L EH++ CG RTELC  C R + ++E   H + C  V E
Sbjct:   49 SDMDIHVATEHCQVTC-KCNKKLEKRQLKQHVETECPLRLAVCQHCDLELSVVKLKEHEDYCGARTELCGSCGRNVLVKELQTHPAVCGRVEE 140

[Close]

BLAST of Egl198220.7 vs. ExPASy Swiss-Prot
Match: TRAD1_MOUSE (TRAF-type zinc finger domain-containing protein 1 OS=Mus musculus OX=10090 GN=Trafd1 PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 9.358e-11
Identity = 34/93 (36.56%), Postives = 47/93 (50.54%), Query Frame = 0

Query:    3 SVIDFHAFE---QVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPE 92
            S +D H      QV C +C++ +E+  L  H    CP R+  C  C+  L  V L EH++ CG RTELC  C R + ++E   H   C  V E
Sbjct:   49 SDMDIHMAAEHCQVTC-KCNKKLEKRQLKQHAETECPLRLAVCQHCDLELSVVKLKEHEDYCGARTELCGSCGRNVLVKELKTHPEVCGRVEE 140

[Close]

BLAST of Egl198220.7 vs. ExPASy Swiss-Prot
Match: TRAD1_BOVIN (TRAF-type zinc finger domain-containing protein 1 OS=Bos taurus OX=9913 GN=TRAFD1 PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.229e-9
Identity = 32/102 (31.37%), Postives = 51/102 (50.00%), Query Frame = 0

Query:   12 QVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCT-GVPENTVGSSRNARAAESDQGAHR 112
            QV C +C++ +E+  L  H+   CP R+  C  C+  L  + L +H++ CG RTELC  C R + +++   H   C   V E  V ++    A +   G  R
Sbjct:   61 QVTC-KCNKKLEKRQLKKHEETECPLRLALCQHCDLELSVLKLKDHEDYCGARTELCGTCGRNVLVKDLKTHPEVCGRDVEEKRVEAAMPPNAYDESWGPDR 161

[Close]

BLAST of Egl198220.7 vs. ExPASy Swiss-Prot
Match: XAF1_BOVIN (XIAP-associated factor 1 OS=Bos taurus OX=9913 GN=XAF1 PE=2 SV=2)

HSP 1 Score: 54.6842 bits (130), Expect = 3.283e-8
Identity = 29/81 (35.80%), Postives = 43/81 (53.09%), Query Frame = 0

Query:    9 AFEQVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFP--LPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRC 87
              +QV C+ C +++ +  L  H+ + C +R V C FC+    L  VDL EH   CG +TELC  C +++ LR    H   C
Sbjct:   53 GHQQVGCAMCQQSVPKHSLDSHEAQECQERPVECQFCQLAVRLNKVDLHEHH--CGQQTELCPDCGQHVMLRVLARHREEC 131

[Close]

BLAST of Egl198220.7 vs. ExPASy Swiss-Prot
Match: TRAD1_MACFA (TRAF-type zinc finger domain-containing protein 1 OS=Macaca fascicularis OX=9541 GN=TRAFD1 PE=2 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 4.174e-7
Identity = 27/76 (35.53%), Postives = 43/76 (56.58%), Query Frame = 0

Query:   12 QVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRC 87
            QV C +C++ +E+ +L  H+   CP R+  C  C+  L  + L EH++ CG RTELC  C R + +++   H   C
Sbjct:   61 QVTC-KCNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDLKTHPEVC 135

[Close]

BLAST of Egl198220.7 vs. ExPASy Swiss-Prot
Match: TRAD1_HUMAN (TRAF-type zinc finger domain-containing protein 1 OS=Homo sapiens OX=9606 GN=TRAFD1 PE=1 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 4.911e-7
Identity = 27/76 (35.53%), Postives = 43/76 (56.58%), Query Frame = 0

Query:   12 QVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRC 87
            QV C +C++ +E+ +L  H+   CP R+  C  C+  L  + L EH++ CG RTELC  C R + +++   H   C
Sbjct:   61 QVTC-KCNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDLKTHPEVC 135

[Close]

BLAST of Egl198220.7 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:3224863-3226860 REVERSE LENGTH=192)

HSP 1 Score: 177.948 bits (450), Expect = 2.588e-57
Identity = 91/138 (65.94%), Postives = 102/138 (73.91%), Query Frame = 0

Query:   13 VACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRNARAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFFQRKTE 150
            +ACS C ET+EREI   HKGE CP+RIVTC+FCEFPLPAVDLAEHQEVCGNRTELC+ CN Y+RLRERYNHE++C G  E+   S R  RAAE D    RR      N    KR   TIAITGIAV++GSLFFQRK E
Sbjct:   61 IACSMCKETIEREIFDSHKGEICPKRIVTCEFCEFPLPAVDLAEHQEVCGNRTELCYQCNSYVRLRERYNHETKCPGTVES---SRRIPRAAEGDGNGRRR---RDGNGVSNKRLFFTIAITGIAVIIGSLFFQRKPE 192

[Close]

BLAST of Egl198220.7 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:8823453-8825949 FORWARD LENGTH=684)

HSP 1 Score: 53.1434 bits (126), Expect = 1.379e-8
Identity = 29/89 (32.58%), Postives = 46/89 (51.69%), Query Frame = 0

Query:    7 FHAFEQVACSQCSETMEREILAIHKGENCPQRIVTCDFC----EFPLPAVD-------LAEHQEVCGNRTELCHLCNRYIRLRERYNHE 84
            FH  E + C  C   +E+E +  H+G++CP R++ C FC    E    A D       ++EH+  CG+RT  C  C R + L++   H+
Sbjct:  591 FH--EPLTCG-CGIVLEKEQMVQHQGKDCPLRLIACRFCGDMVEAGNSAADTRDRMRGMSEHESTCGSRTAPCDSCGRSVMLKDMDIHQ 676

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BLAST of Egl198220.7 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:8823822-8825949 FORWARD LENGTH=561)

HSP 1 Score: 52.373 bits (124), Expect = 2.509e-8
Identity = 29/89 (32.58%), Postives = 46/89 (51.69%), Query Frame = 0

Query:    7 FHAFEQVACSQCSETMEREILAIHKGENCPQRIVTCDFC----EFPLPAVD-------LAEHQEVCGNRTELCHLCNRYIRLRERYNHE 84
            FH  E + C  C   +E+E +  H+G++CP R++ C FC    E    A D       ++EH+  CG+RT  C  C R + L++   H+
Sbjct:  468 FH--EPLTCG-CGIVLEKEQMVQHQGKDCPLRLIACRFCGDMVEAGNSAADTRDRMRGMSEHESTCGSRTAPCDSCGRSVMLKDMDIHQ 553

The following BLAST results are available for this feature:

BLAST of Egl198220.7 vs. ExPASy TrEMBL
BLAST of Egl198220.7 vs. ExPASy Swiss-Prot
BLAST of Egl198220.7 vs. Araport11

BLAST of Egl198220.7 vs. ExPASy TrEMBL
Analysis Date: 2024-02-02 (Blastp of Citrus australasica cv. AZM v1.0 proteins vs UniProt TrEMBL)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
A0A067GNH6\|A0A067GNH6_CITSI	2.361e-103	97.33	TRAF-type domain-containing protein OS=Citrus sine...	[more]
A0A2H5P6Y2\|A0A2H5P6Y2_CITUN	1.509e-100	93.46	TRAF-type domain-containing protein OS=Citrus unsh...	[more]
A0A2H5P6X9\|A0A2H5P6X9_CITUN	1.439e-99	92.76	TRAF-type domain-containing protein OS=Citrus unsh...	[more]
A0A067H137\|A0A067H137_CITSI	8.513e-99	98.60	TRAF-type domain-containing protein OS=Citrus sine...	[more]
A0A2H5P6W7\|A0A2H5P6W7_CITUN	1.606e-98	98.59	TRAF-type domain-containing protein (Fragment) OS=...	[more]
V4T1K3\|V4T1K3_CITCL	4.656e-98	97.90	TRAF-type domain-containing protein OS=Citrus clem...	[more]
A0A6P6AUD9\|A0A6P6AUD9_DURZI	6.025e-81	85.31	XIAP-associated factor 1-like OS=Durio zibethinus ...	[more]
A0A6P4ACW2\|A0A6P4ACW2_ZIZJJ	2.432e-80	80.82	XIAP-associated factor 1 OS=Ziziphus jujuba OX=326...	[more]
A0A061FFL4\|A0A061FFL4_THECC	9.749e-80	83.92	TRAF-type zinc finger domain-containing protein 1 ...	[more]
A0A5C7H6Q0\|A0A5C7H6Q0_9ROSI	1.148e-79	79.19	TRAF-type domain-containing protein OS=Acer yangbi...	[more]

BLAST of Egl198220.7 vs. ExPASy Swiss-Prot
Analysis Date: 2024-02-02 (Blastp of Citrus australasica cv. AZM v1.0 proteins vs UniProt Swissprot)
Total hits: 7

Position :

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Match Name	E-value	Identity	Description
XAF1_HUMAN	4.283e-11	30.09	XIAP-associated factor 1 OS=Homo sapiens OX=9606 G...	[more]
TRAD1_RAT	9.080e-11	36.56	TRAF-type zinc finger domain-containing protein 1 ...	[more]
TRAD1_MOUSE	9.358e-11	36.56	TRAF-type zinc finger domain-containing protein 1 ...	[more]
TRAD1_BOVIN	1.229e-9	31.37	TRAF-type zinc finger domain-containing protein 1 ...	[more]
XAF1_BOVIN	3.283e-8	35.80	XIAP-associated factor 1 OS=Bos taurus OX=9913 GN=...	[more]
TRAD1_MACFA	4.174e-7	35.53	TRAF-type zinc finger domain-containing protein 1 ...	[more]
TRAD1_HUMAN	4.911e-7	35.53	TRAF-type zinc finger domain-containing protein 1 ...	[more]

BLAST of Egl198220.7 vs. Araport11
Analysis Date: 2024-02-02 (Blastp of Citrus australasica cv. AZM v1.0 proteins vs Araport11)
Total hits: 3

Position :

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Match Name	E-value	Identity	Description
\|	2.588e-57	65.94	Symbols: no symbol available \| no full name availa...	[more]
\|	1.379e-8	32.58	Symbols: no symbol available \| no full name availa...	[more]
\|	2.509e-8	32.58	Symbols: no symbol available \| no full name availa...	[more]

InterPro

Analysis Name: InterProScan Analysis for Citrus australasica cv. AZM v1.0 proteins
Date Performed: 2024-02-02

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 9..63 e-value: 1.2E-9 score: 40.3
None	No IPR available	PANTHER	PTHR16295	TRAF-TYPE ZINC FINGER PROTEIN-RELATED	coord: 11..151

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at contig286:28311..31481+
coding sequence from alignment at contig286:28311..31481+

mRNA sequence

>Egl198220.7-AZM_v1 ID=Egl198220.7-AZM_v1; Name=Egl198220.7; organism=Citrus australasica; type=mRNA; length=468bp
ATGATTTCTGTTATTGACTTTCATGCTTTTGAGCAGGTGGCCTGTTCACA
GTGCAGCGAGACAATGGAGCGTGAAATTTTAGCCATCCATAAAGGTGAAA
ATTGCCCACAAAGGATTGTCACTTGCGACTTTTGTGAGTTTCCACTGCCT
GCAGTTGATCTGGCCGAGCATCAGGAAGTCTGTGGGAATCGCACAGAACT
TTGTCATCTGTGTAACAGATATATTAGGTTGCGAGAAAGATATAACCATG
AAAGTAGGTGCACAGGTGTCCCAGAAAACACTGTTGGATCTTCCAGGAAT
GCAAGGGCAGCTGAAAGTGACCAAGGGGCTCACAGAAGGCCGGCACCCCC
GCCGCCAAACGAGTTTTATCGGAAACGATTTCTACTTACCATAGCAATAA
CAGGCATTGCTGTTCTATTAGGATCTCTTTTTTTCCAGAGAAAGACGGAG
ACTAGTCAAGTGCATTAG

protein sequence of Egl198220.7-AZM_v1

>Egl198220.7-AZM_v1 ID=Egl198220.7-AZM_v1; Name=Egl198220.7-AZM_v1; organism=Citrus australasica; type=polypeptide; length=156bp
MISVIDFHAFEQVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLP
AVDLAEHQEVCGNRTELCHLCNRYIRLRERYNHESRCTGVPENTVGSSRN
ARAAESDQGAHRRPAPPPPNEFYRKRFLLTIAITGIAVLLGSLFFQRKTE
TSQVH*

mRNA from alignment at contig286:28311..31481+

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=3171bp; location=Sequence derived from: contig286:28311..31481+ (Citrus australasica
AAGTAATCAAAATCTCCGCATTCCTCAGACACGAAGCCTCCCTTCCCAAT
TTGAAAAAAAAAAAAAAAAAAAATTGTTTTATTTCTTATTTTATTTTCCC
CCTAATTTTCTGAGAAATCCATAAAACAGCATCTAGCGAGAACAAGACTG
CGACATCACACAACCTTCTTCTATCTTTACCTAAAAAGGTAATTTCTGTT
CTCAATTATCTTTGATCAATAATATAATATATAATTCTAATCTTGGGCTC
TTGGCACTATTTCTTTCTTTTATCTCACTCCTTTCACAGTCTTTATTTCG
ATTGCAGAGCTACGACGTCGTCGTATTGATTGATCGTATCGCGATGGCAA
TGACTTCTGATGAAACCACAAAAATATGCAGTCACTGGTAATTATTCTAT
CTCAATTTTTTGTTTTACAATTTTTACGATAAGTCATATTTAAAATATGT
AAAATTCAATTCGTATTTATTGATTAATTGTTTTACAGGATCTTTTTTTT
TTTTTTTTGGCACCTGATTTAGCTCAAGTTTTATGTAACTCTTGTTTGAT
ATTTGTGGAAAATTTACTATAAATTTAAAAGTCAACTCAATTGATTTTGA
CCATACAGGTTTTTTTATTCCCTTTGACCTTCACTTTCCTCACTTAATTT
GGAGGTTCAATTTTTGTTAAATACCATGCTGTAGATTTGTTTCTGGATCG
GATTGATTTATTGATTGACTTTAGGTTTGGATCATCTCCTGAATATGGTG
TTAGATATGGAAAGTTGCTTAGAAGCTGATATTAAGGATGTTATTGTAGT
GGCCTAACCACCTAACTCTGTGATTGCTGCGATGTGATGTGTTACATTTT
GCCAGTTTTTACGGATCAGTTCTGTTCAGCAATGGTATATTCATCATTCA
TTCCCTAGTATTAGTGTGAGACTGTGACAATATGTTCCGGGCACTATTTT
GTATTGCAATTTACTTCATGAATTTCTGTTGTATAATTTTGCCACTTTTT
TTTTGTCTTTTTAGTGACAGAGCTATACCGTCTTCAAATATTGATTTGCA
TTTTGCACATTGCTCGCGGAATCTGGAACGATGTAAAGTATGTGGTGACA
TGGTTCCAAGGAAATATGCTGAGGAGCACTTCTTAAATACCCATGCCCCG
GTACGTGATTAACTAATGTGATGCATGCTGGTATATAGTGAATGTGAACT
TCCGCAAGTTCTTAGTGCCATATGTATTCATTCTAATTTCTGCTGGAGTT
CACCTTGGAAACTGGGAATTCTACTGTTGCCTTGGCCATAAAGTAAGGCA
GTTGAGAGGAAAGCATCTCAGTTGGAGGTTGGTGGGGTTCTTAAGGTGAT
AGTTTGTGTGATTAAGAAAAGTTGAATTGTTGAAAGAAGTTTGCATGACT
TTTATGATGGTTAATGCAACCACTAGAAGCATATACCAGGAGAGATAGGT
CCCTCTGCTGGGATTACCAATAAGGAAATTTACCACTAGGTTGCAGGTGG
ACAACTTACCTTGCTTTCATTTTAACTACCAGAGTACAAGTTACATCTCT
GAAGTCATTGGTTGAGCCTATGACTCTTTGTACTAACTGCAAACTTTCTA
TTTCATTTCCTCTCACTTCCTCTCCTTGCCCTGCCTCTCTTGTATGGAAT
GAGTCCTGAACTCATGATAGTGACCTTGGGCTTGCTGGTAGCCTATTCGT
TTCAGGCCTCTCCTCAACAAAGTTAAAAATATTGGCTGTCTTTTCCCCCA
TAGCATGTGCGCCCTAGCTTATGTGTATAGAATTATTAAGGAAACTAGTG
TTGATAGCATTAGAGAGAATGTATTTTCATATTGGCCTTATTGGTAGTTG
ACTTTGGGATTTTTTTGTTTTATGCCGTATGTCTTTAAAATGTTGGTTTG
TAAAATCAGAAGCAGGCTAGGCAAGTCTGGACTAGATCAACCATTTGCTT
ATTTAGAATGAGACCGCTCAATCATTAATAATTTTTTTCAGACATATATT
TGGGATGATGTCTTGTTGATACACAAAACCATCTTAGTGATTGATCAAAA
CTGATAGGTGCAGGCATACTAGTTTTTTTGATTGAGGAATTGAAGTAGGT
ATACTATGTGTTTCGATGATTTCTGTTATTGACTTTCATGCTTTTGAGCA
GGTGGCCTGTTCACAGTGCAGCGAGACAATGGAGCGTGAAATTTTAGCCA
TCCATAAAGGTGAAAATTGCCCACAAAGGATTGTCACTTGCGACTTTTGT
GAGTTTCCACTGCCTGCAGTTGATCTGGCCGAGCATCAGGTGGCAATCGT
CAATAATTTTGAAAATGGAAAGACAATATCTGATGCAATATCTTCCTACT
TGGGTGTGATGCTTTGTTGCTTTGTTATTGTAGGAAGTCTGTGGGAATCG
CACAGAACTTTGTCATCTGTGTAACAGATATATTAGGTTGCGAGAAAGAT
ATAACCATGAAAGTAGGTGCACAGGTGTCCCAGAAAACACTGTTGGATCT
TCCAGGTATGTTTGCTTGTGTTTTACCAGAGCTATAGTTAAATAGATTTG
TTTTAGTTACATTCCATCACTTAGAACTGAACAGTGGCATTGGTAATTCA
GAATAAATATAAGCTAAGATTTTGAATCTTATGGAGTCAATTTGCGATGA
CCTGTGTTGATTCAAAATTCTGGAAGTCTGGAAAAAGAAGACGGTTTAGA
TGTGTAATTTTGCTCTATATCTTTGTCTTTTAAATTTTCCATTTCAATCT
TTGTGAAGGAATGCAAGGGCAGCTGAAAGTGACCAAGGGGCTCACAGAAG
GCCGGCACCCCCGCCGCCAAACGAGTTTTATCGGAAACGATTTCTACTTA
CCATAGCAATAACAGGCATTGCTGTTCTATTAGGATCTCTTTTTTTCCAG
AGAAAGACGGAGACTAGTCAAGTGCATTAGCAGCAGAATAGAGGATAAAC
ACGGGAGGAGTATATATGTCGGTGACAAACCAATGTATTCCATTTATCTG
TACCTAGATCATCTAAAAGCATGTACTGCTATGACCTCACTGAACTCATT
GGCATTTTGGCAATATGTTGAACGGCTATGCAACATTTGTTTCTTGCTTT
ATTATGAAGAGTTTCATCATATTCACTTGTGCTAGAAATAATTTGTTGTA
CTACATGGTACACACAGTCCC

Coding sequence (CDS) from alignment at contig286:28311..31481+

>Egl198220.7-AZM_v1 ID=Egl198220.7-AZM_v1; Name=Egl198220.7; organism=Citrus australasica; type=CDS; length=468bp; location=Sequence derived from: contig286:28311..31481+ (Citrus australasica
ATGATTTCTGTTATTGACTTTCATGCTTTTGAGCAGGTGGCCTGTTCACA
GTGCAGCGAGACAATGGAGCGTGAAATTTTAGCCATCCATAAAGGTGAAA
ATTGCCCACAAAGGATTGTCACTTGCGACTTTTGTGAGTTTCCACTGCCT
GCAGTTGATCTGGCCGAGCATCAGGAAGTCTGTGGGAATCGCACAGAACT
TTGTCATCTGTGTAACAGATATATTAGGTTGCGAGAAAGATATAACCATG
AAAGTAGGTGCACAGGTGTCCCAGAAAACACTGTTGGATCTTCCAGGAAT
GCAAGGGCAGCTGAAAGTGACCAAGGGGCTCACAGAAGGCCGGCACCCCC
GCCGCCAAACGAGTTTTATCGGAAACGATTTCTACTTACCATAGCAATAA
CAGGCATTGCTGTTCTATTAGGATCTCTTTTTTTCCAGAGAAAGACGGAG
ACTAGTCAAGTGCATTAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD