NM_gene55318.t1
|
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of NM_gene55318.t1 vs. ExPASy TrEMBL
Match: A0A2P2IQT0|A0A2P2IQT0_RHIMU (Protein SHOOT GRAVITROPISM 5-like isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 1.564e-54 Identity = 83/97 (85.57%), Postives = 90/97 (92.78%), Query Frame = 0 Query: 16 HIDPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETKEVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
+IDPDAE+VSLSP+TLL SD YV EICN GFQRDQNLQMHRRRHK+PWKLLKRET+EVKKRV+VCPEPSCLHHD HALGD VGIKKHFRRKH+NHK
Sbjct: 2 YIDPDAEVVSLSPRTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQEVKKRVYVCPEPSCLHHDPSHALGDLVGIKKHFRRKHSNHK 98
BLAST of NM_gene55318.t1 vs. ExPASy TrEMBL
Match: A0A438HXS4|A0A438HXS4_VITVI (Protein SHOOT GRAVITROPISM 5 OS=Vitis vinifera OX=29760 GN=SGR5_2 PE=4 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 1.038e-53 Identity = 85/97 (87.63%), Postives = 90/97 (92.78%), Query Frame = 0 Query: 16 HIDPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETKEVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
+IDPDAE+VSLSPKTLL SD YV EICN GFQRDQNLQMHRRRHK+PWKLLKRET+EVKKRVFVCPEPSCLHHD HALGD VGIKKHFRRKH+NHK
Sbjct: 49 YIDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQEVKKRVFVCPEPSCLHHDPLHALGDLVGIKKHFRRKHSNHK 145
BLAST of NM_gene55318.t1 vs. ExPASy TrEMBL
Match: A0A2P5EDZ8|A0A2P5EDZ8_TREOI (TFIIH C1-like domain containing protein OS=Trema orientale OX=63057 GN=TorRG33x02_204350 PE=4 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 1.067e-53 Identity = 84/95 (88.42%), Postives = 88/95 (92.63%), Query Frame = 0 Query: 18 DPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETKEVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
DPDAE+VSLSPKTLL SD YV EICN GFQRDQNLQMHRRRHK+PWKLLKRET+EVKKRVFVCPEPSCLHHD HALGD VGIKKHFRRKH+NHK
Sbjct: 65 DPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQEVKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHK 159
BLAST of NM_gene55318.t1 vs. ExPASy TrEMBL
Match: A0A7N2L6T7|A0A7N2L6T7_QUELO (C2H2-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 1.200e-53 Identity = 84/95 (88.42%), Postives = 88/95 (92.63%), Query Frame = 0 Query: 18 DPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETKEVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
DPDAE+VSLSPKTLL SD YV EICN GFQRDQNLQMHRRRHK+PWKLLKRET+EVKKRVFVCPEPSCLHHD HALGD VGIKKHFRRKH+NHK
Sbjct: 38 DPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQEVKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHK 132
BLAST of NM_gene55318.t1 vs. ExPASy TrEMBL
Match: A0A6A6LZA8|A0A6A6LZA8_HEVBR (C2H2-type domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_007678 PE=4 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 2.085e-53 Identity = 86/107 (80.37%), Postives = 93/107 (86.92%), Query Frame = 0 Query: 9 THKYKRTHI---DPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETKEVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
T+K KR DPDAE+VSLSP+TLL SD YV EICN GFQRDQNLQMHRRRHK+PWKLLKRET+EVKKRV+VCPEPSCLHHD HALGD VGIKKHFRRKH+NHK
Sbjct: 25 TNKKKRKPAGTPDPDAEVVSLSPRTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQEVKKRVYVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHK 131
BLAST of NM_gene55318.t1 vs. ExPASy TrEMBL
Match: A0A2P2IQP4|A0A2P2IQP4_RHIMU (C2H2-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 2.144e-53 Identity = 86/109 (78.90%), Postives = 93/109 (85.32%), Query Frame = 0 Query: 7 FDTHKYKRTHI---DPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETKEVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
T+K KR DPDAE+VSLSP+TLL SD YV EICN GFQRDQNLQMHRRRHK+PWKLLKRET+EVKKRV+VCPEPSCLHHD HALGD VGIKKHFRRKH+NHK
Sbjct: 26 LSTNKRKRKPAGTPDPDAEVVSLSPRTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQEVKKRVYVCPEPSCLHHDPSHALGDLVGIKKHFRRKHSNHK 134
BLAST of NM_gene55318.t1 vs. ExPASy TrEMBL
Match: A0A6A3B6P2|A0A6A3B6P2_HIBSY (Protein SHOOT GRAVITROPISM 5 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110253pilonHSYRG00034 PE=4 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 2.252e-53 Identity = 88/116 (75.86%), Postives = 92/116 (79.31%), Query Frame = 0 Query: 2 FFCFLFDTHKYKRTH-----IDPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETKEVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
F CF H KR DPDAE+VSLSPKTLL SD YV EICN GFQRDQNLQMHRRRHK+PWKLLKRET V+KRVFVCPEPSCLHHD HALGD VGIKKHFRRKH+NHK
Sbjct: 16 FACFENGNHNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHK 131
BLAST of NM_gene55318.t1 vs. ExPASy TrEMBL
Match: A0A7J8LEM5|A0A7J8LEM5_9ROSI (C2H2-type domain-containing protein OS=Gossypium lobatum OX=34289 GN=Golob_021742 PE=4 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 2.647e-53 Identity = 86/107 (80.37%), Postives = 92/107 (85.98%), Query Frame = 0 Query: 9 THKYKRTHI---DPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETKEVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
THK KR DPDAE+VSLSPKTLL SD YV EICN GFQRDQNLQMHRRRHK+PWKLLKRE++EVKKRVFVCPEP+CLHHD HALGD VGIKKHFRRKH+N K
Sbjct: 29 THKRKRKPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRESQEVKKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNQK 135
BLAST of NM_gene55318.t1 vs. ExPASy TrEMBL
Match: A0A6A1VPL3|A0A6A1VPL3_9ROSI (Protein SHOOT GRAVITROPISM 5 OS=Morella rubra OX=262757 GN=CJ030_MR5G017537 PE=4 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 2.699e-53 Identity = 87/107 (81.31%), Postives = 93/107 (86.92%), Query Frame = 0 Query: 9 THKYKRTHI---DPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETKEVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
T+K KR DPDAE+VSLSPKTLL SD YV EICN GFQRDQNLQMHRRRHK+PWKLLKRET+EVKKRVFVCPEP+CLHHD HALGD VGIKKHFRRKH+NHK
Sbjct: 26 TNKRKRKPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQEVKKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHK 132
BLAST of NM_gene55318.t1 vs. ExPASy TrEMBL
Match: A0A2N9F2X3|A0A2N9F2X3_FAGSY (C2H2-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS9222 PE=4 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 3.117e-53 Identity = 84/95 (88.42%), Postives = 88/95 (92.63%), Query Frame = 0 Query: 18 DPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETKEVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
DPDAE+VSLSPKTLL SD YV EICN GFQRDQNLQMHRRRHK+PWKLLKRET+EVKKRVFVCPEPSCLHHD HALGD VGIKKHFRRKH+NHK
Sbjct: 38 DPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQEVKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHK 132
BLAST of NM_gene55318.t1 vs. Araport11
Match: AT1G68130.1 (| indeterminate(ID)-domain 14 | Chr1:25532484-25534317 FORWARD LENGTH=419 | 201606) HSP 1 Score: 169.859 bits (429), Expect = 2.825e-52 Identity = 78/96 (81.25%), Postives = 88/96 (91.67%), Query Frame = 0 Query: 18 DPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRET-KEVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
DP+AE+VSLSP+TLL SD YV EICN GFQRDQNLQMHRRRHK+PWKLLKRET +EV+KRV+VCPEP+CLHH+ HALGD VGIKKHFRRKH+NHK
Sbjct: 51 DPEAEVVSLSPRTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETNEEVRKRVYVCPEPTCLHHNPCHALGDLVGIKKHFRRKHSNHK 146
BLAST of NM_gene55318.t1 vs. Araport11
Match: AT1G25250.3 (| indeterminate(ID)-domain 16 | Chr1:8849473-8851520 FORWARD LENGTH=385 | 201606) HSP 1 Score: 167.933 bits (424), Expect = 6.471e-52 Identity = 83/109 (76.15%), Postives = 91/109 (83.49%), Query Frame = 0 Query: 9 THKYKRTHI---DPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETK--EVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
THK KR DPDAE+VSLSP+TLL SD YV EICN GFQRDQNLQMHRRRHK+PWKLLKR+ K EV+KRV+VCPEP+CLHHD HALGD VGIKKHFRRKH+ HK
Sbjct: 31 THKRKRRPAGTPDPDAEVVSLSPRTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRDKKDEEVRKRVYVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSVHK 139
BLAST of NM_gene55318.t1 vs. Araport11
Match: AT1G25250.1 (| indeterminate(ID)-domain 16 | Chr1:8849549-8851520 FORWARD LENGTH=362 | 201606) HSP 1 Score: 166.392 bits (420), Expect = 1.367e-51 Identity = 78/98 (79.59%), Postives = 86/98 (87.76%), Query Frame = 0 Query: 17 IDPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETK--EVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
DPDAE+VSLSP+TLL SD YV EICN GFQRDQNLQMHRRRHK+PWKLLKR+ K EV+KRV+VCPEP+CLHHD HALGD VGIKKHFRRKH+ HK
Sbjct: 19 TDPDAEVVSLSPRTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRDKKDEEVRKRVYVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSVHK 116
BLAST of NM_gene55318.t1 vs. Araport11
Match: AT2G01940.1 (| C2H2-like zinc finger protein | Chr2:432652-434917 FORWARD LENGTH=445 | 201606) HSP 1 Score: 167.162 bits (422), Expect = 4.558e-51 Identity = 77/96 (80.21%), Postives = 86/96 (89.58%), Query Frame = 0 Query: 18 DPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETK-EVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
DPDAE+VSLSP+TLL SD Y+ EICN GFQRDQNLQMHRRRHK+PWKLLKR+ EVKKRV+VCPEP+CLHH+ HALGD VGIKKHFRRKH+NHK
Sbjct: 54 DPDAEVVSLSPRTLLESDRYICEICNQGFQRDQNLQMHRRRHKVPWKLLKRDNNIEVKKRVYVCPEPTCLHHNPCHALGDLVGIKKHFRRKHSNHK 149
BLAST of NM_gene55318.t1 vs. Araport11
Match: AT2G01940.3 (| C2H2-like zinc finger protein | Chr2:432652-434917 FORWARD LENGTH=446 | 201606) HSP 1 Score: 167.162 bits (422), Expect = 4.649e-51 Identity = 77/96 (80.21%), Postives = 86/96 (89.58%), Query Frame = 0 Query: 18 DPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETK-EVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
DPDAE+VSLSP+TLL SD Y+ EICN GFQRDQNLQMHRRRHK+PWKLLKR+ EVKKRV+VCPEP+CLHH+ HALGD VGIKKHFRRKH+NHK
Sbjct: 54 DPDAEVVSLSPRTLLESDRYICEICNQGFQRDQNLQMHRRRHKVPWKLLKRDNNIEVKKRVYVCPEPTCLHHNPCHALGDLVGIKKHFRRKHSNHK 149
BLAST of NM_gene55318.t1 vs. Araport11
Match: AT5G66730.1 (| C2H2-like zinc finger protein | Chr5:26641914-26643883 REVERSE LENGTH=500 | 201606) HSP 1 Score: 147.517 bits (371), Expect = 3.793e-43 Identity = 61/95 (64.21%), Postives = 75/95 (78.95%), Query Frame = 0 Query: 18 DPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETKEVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
DPDAE+++LSPKTL+ ++ +V EICN GFQRDQNLQ+HRR H +PWKL +R TKEV+K+V+VCP C+HHD ALGD GIKKHF RKH K
Sbjct: 42 DPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTKEVRKKVYVCPVSGCVHHDPSRALGDLTGIKKHFCRKHGEKK 136
BLAST of NM_gene55318.t1 vs. Araport11
Match: AT3G50700.1 (| indeterminate(ID)-domain 2 | Chr3:18840945-18842829 FORWARD LENGTH=452 | 201606) HSP 1 Score: 145.206 bits (365), Expect = 1.274e-42 Identity = 61/95 (64.21%), Postives = 76/95 (80.00%), Query Frame = 0 Query: 18 DPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETKEVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
DP++E+++LSPKTLL ++ +V EICN GFQRDQNLQ+HRR H +PWKL ++ KEVKK+V+VCPE SC+HHD ALGD GIKKHF RKH K
Sbjct: 44 DPESEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQKSNKEVKKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKK 138
BLAST of NM_gene55318.t1 vs. Araport11
Match: AT2G02080.5 (| indeterminate(ID)-domain 4 | Chr2:518328-521170 REVERSE LENGTH=516 | 201606) HSP 1 Score: 141.354 bits (355), Expect = 7.865e-41 Identity = 56/95 (58.95%), Postives = 78/95 (82.11%), Query Frame = 0 Query: 18 DPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETKEVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
+PDAE+V+LSPKTL+ ++ ++ ++CN GFQR+QNLQ+HRR H +PWKL ++ TKEVK++V++CPEP+C+HHD ALGD GIKKH+ RKH K
Sbjct: 64 NPDAEVVALSPKTLMATNRFICDVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYYRKHGEKK 158
BLAST of NM_gene55318.t1 vs. Araport11
Match: AT2G02080.4 (| indeterminate(ID)-domain 4 | Chr2:518328-521170 REVERSE LENGTH=516 | 201606) HSP 1 Score: 141.354 bits (355), Expect = 7.865e-41 Identity = 56/95 (58.95%), Postives = 78/95 (82.11%), Query Frame = 0 Query: 18 DPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETKEVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
+PDAE+V+LSPKTL+ ++ ++ ++CN GFQR+QNLQ+HRR H +PWKL ++ TKEVK++V++CPEP+C+HHD ALGD GIKKH+ RKH K
Sbjct: 64 NPDAEVVALSPKTLMATNRFICDVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYYRKHGEKK 158
BLAST of NM_gene55318.t1 vs. Araport11
Match: AT2G02080.3 (| indeterminate(ID)-domain 4 | Chr2:518328-521170 REVERSE LENGTH=516 | 201606) HSP 1 Score: 141.354 bits (355), Expect = 7.865e-41 Identity = 56/95 (58.95%), Postives = 78/95 (82.11%), Query Frame = 0 Query: 18 DPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETKEVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
+PDAE+V+LSPKTL+ ++ ++ ++CN GFQR+QNLQ+HRR H +PWKL ++ TKEVK++V++CPEP+C+HHD ALGD GIKKH+ RKH K
Sbjct: 64 NPDAEVVALSPKTLMATNRFICDVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYYRKHGEKK 158
BLAST of NM_gene55318.t1 vs. ExPASy Swiss-Prot
Match: IDD14_ARATH (Protein indeterminate-domain 14 OS=Arabidopsis thaliana OX=3702 GN=IDD14 PE=1 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 2.761e-51 Identity = 78/96 (81.25%), Postives = 88/96 (91.67%), Query Frame = 0 Query: 18 DPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRET-KEVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
DP+AE+VSLSP+TLL SD YV EICN GFQRDQNLQMHRRRHK+PWKLLKRET +EV+KRV+VCPEP+CLHH+ HALGD VGIKKHFRRKH+NHK
Sbjct: 51 DPEAEVVSLSPRTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETNEEVRKRVYVCPEPTCLHHNPCHALGDLVGIKKHFRRKHSNHK 146
BLAST of NM_gene55318.t1 vs. ExPASy Swiss-Prot
Match: IDD16_ARATH (Protein indeterminate-domain 16 OS=Arabidopsis thaliana OX=3702 GN=IDD16 PE=2 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.336e-50 Identity = 78/98 (79.59%), Postives = 86/98 (87.76%), Query Frame = 0 Query: 17 IDPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETK--EVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
DPDAE+VSLSP+TLL SD YV EICN GFQRDQNLQMHRRRHK+PWKLLKR+ K EV+KRV+VCPEP+CLHHD HALGD VGIKKHFRRKH+ HK
Sbjct: 19 TDPDAEVVSLSPRTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRDKKDEEVRKRVYVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSVHK 116
BLAST of NM_gene55318.t1 vs. ExPASy Swiss-Prot
Match: IDD15_ARATH (Zinc finger protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana OX=3702 GN=SGR5 PE=1 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 4.455e-50 Identity = 77/96 (80.21%), Postives = 86/96 (89.58%), Query Frame = 0 Query: 18 DPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETK-EVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
DPDAE+VSLSP+TLL SD Y+ EICN GFQRDQNLQMHRRRHK+PWKLLKR+ EVKKRV+VCPEP+CLHH+ HALGD VGIKKHFRRKH+NHK
Sbjct: 54 DPDAEVVSLSPRTLLESDRYICEICNQGFQRDQNLQMHRRRHKVPWKLLKRDNNIEVKKRVYVCPEPTCLHHNPCHALGDLVGIKKHFRRKHSNHK 149
BLAST of NM_gene55318.t1 vs. ExPASy Swiss-Prot
Match: IDD1_ARATH (Zinc finger protein ENHYDROUS OS=Arabidopsis thaliana OX=3702 GN=ENY PE=1 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 3.708e-42 Identity = 61/95 (64.21%), Postives = 75/95 (78.95%), Query Frame = 0 Query: 18 DPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETKEVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
DPDAE+++LSPKTL+ ++ +V EICN GFQRDQNLQ+HRR H +PWKL +R TKEV+K+V+VCP C+HHD ALGD GIKKHF RKH K
Sbjct: 42 DPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTKEVRKKVYVCPVSGCVHHDPSRALGDLTGIKKHFCRKHGEKK 136
BLAST of NM_gene55318.t1 vs. ExPASy Swiss-Prot
Match: IDD2_ARATH (Zinc finger protein GAI-ASSOCIATED FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=GAF1 PE=1 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 1.245e-41 Identity = 61/95 (64.21%), Postives = 76/95 (80.00%), Query Frame = 0 Query: 18 DPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETKEVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
DP++E+++LSPKTLL ++ +V EICN GFQRDQNLQ+HRR H +PWKL ++ KEVKK+V+VCPE SC+HHD ALGD GIKKHF RKH K
Sbjct: 44 DPESEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQKSNKEVKKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKK 138
BLAST of NM_gene55318.t1 vs. ExPASy Swiss-Prot
Match: IDD4_ARATH (Protein indeterminate-domain 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=IDD4 PE=1 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 7.687e-40 Identity = 56/95 (58.95%), Postives = 78/95 (82.11%), Query Frame = 0 Query: 18 DPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETKEVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
+PDAE+V+LSPKTL+ ++ ++ ++CN GFQR+QNLQ+HRR H +PWKL ++ TKEVK++V++CPEP+C+HHD ALGD GIKKH+ RKH K
Sbjct: 64 NPDAEVVALSPKTLMATNRFICDVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYYRKHGEKK 158
BLAST of NM_gene55318.t1 vs. ExPASy Swiss-Prot
Match: IDD3_ARATH (Zinc finger protein MAGPIE OS=Arabidopsis thaliana OX=3702 GN=MGP PE=1 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 5.687e-39 Identity = 59/95 (62.11%), Postives = 75/95 (78.95%), Query Frame = 0 Query: 18 DPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETKEVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
DP+AE+++LSPKTL+ ++ ++ EIC GFQRDQNLQ+HRR H +PWKL +R +KEV+KRV+VCPE SC+HH ALGD GIKKHF RKH K
Sbjct: 51 DPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKK 145
BLAST of NM_gene55318.t1 vs. ExPASy Swiss-Prot
Match: IDD6_ARATH (Protein indeterminate-domain 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=IDD6 PE=1 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 1.199e-38 Identity = 54/95 (56.84%), Postives = 77/95 (81.05%), Query Frame = 0 Query: 18 DPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETKEVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
+PDAE+++LSPKT++ ++ ++ E+CN GFQR+QNLQ+HRR H +PWKL ++ KEV+++V++CPEPSC+HHD ALGD GIKKH+ RKH K
Sbjct: 63 NPDAEVIALSPKTIMATNRFLCEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEVRRKVYLCPEPSCVHHDPARALGDLTGIKKHYYRKHGEKK 157
BLAST of NM_gene55318.t1 vs. ExPASy Swiss-Prot
Match: IDD5_ARATH (Protein indeterminate-domain 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=IDD5 PE=1 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 2.368e-38 Identity = 56/95 (58.95%), Postives = 77/95 (81.05%), Query Frame = 0 Query: 18 DPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETKEVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
+ DAE+++LSPKTL+ ++ ++ E+CN GFQR+QNLQ+HRR H +PWKL ++ TKEVK++V++CPEPSC+HHD ALGD GIKKH+ RKH K
Sbjct: 62 NSDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEVKRKVYLCPEPSCVHHDPSRALGDLTGIKKHYYRKHGEKK 156
BLAST of NM_gene55318.t1 vs. ExPASy Swiss-Prot
Match: IDD8_ARATH (Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana OX=3702 GN=NUC PE=1 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 7.872e-38 Identity = 57/95 (60.00%), Postives = 75/95 (78.95%), Query Frame = 0 Query: 18 DPDAELVSLSPKTLLVSDGYVYEICNHGFQRDQNLQMHRRRHKMPWKLLKRETKEVKKRVFVCPEPSCLHHDSGHALGDFVGIKKHFRRKHNNHK 112
DP+AE+++LSP TL+ ++ ++ E+C GFQRDQNLQ+HRR H +PWKL +R +KEV+KRV+VCPE +C+HH S ALGD GIKKHF RKH K
Sbjct: 47 DPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKHGEKK 141 The following BLAST results are available for this feature:
BLAST of NM_gene55318.t1 vs. ExPASy TrEMBL
Analysis Date: 2023-04-28 (Blastp of Citrus australis v1.0 (UQ) proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of NM_gene55318.t1 vs. Araport11
Analysis Date: 2023-05-04 (Blastp of Citrus limon Eureka v1.0 proteins vs Araport11) Total hits: 10 Position : 0 Zoom : x 1
BLAST of NM_gene55318.t1 vs. ExPASy Swiss-Prot
Analysis Date: 2023-05-04 (Blastp of Citrus limon Eureka v1.0 proteins vs UniProt Swissprot ) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus limon cv. Eureka v1.0 proteins
Date Performed: 2023-05-01 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >NM_gene55318.t1_cle_v1 ID=NM_gene55318.t1_cle_v1; Name=NM_gene55318.t1; organism=Citrus limon; type=mRNA; length=1343bpback to top protein sequence of NM_gene55318.t1_cle_v1 >NM_gene55318.t1_cle_v1 ID=NM_gene55318.t1_cle_v1; Name=NM_gene55318.t1_cle_v1; organism=Citrus limon; type=polypeptide; length=112bpback to top mRNA from alignment at Chr08B:3092546..3093549- Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1004bp; location=Sequence derived from: Chr08B:3092546..3093549- (Citrus limonback to top Coding sequence (CDS) from alignment at Chr08B:3092546..3093549- >NM_gene55318.t1_cle_v1 ID=NM_gene55318.t1_cle_v1; Name=NM_gene55318.t1; organism=Citrus limon; type=CDS; length=339bp; location=Sequence derived from: Chr08B:3092546..3093549- (Citrus limonback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|