XGF201540.3 | Citrus Genome Database

Transcript Overview


Name	XGF201540.3
Unique Name	XGF201540.3-XGF_v1
Type	mRNA
Organism	Citrus maxima (Pomelo, pummelo)
Sequence length	531

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus maxima cv. XGF genome v1.0	2023-12-21
InterProScan Analysis for Citrus maxima cv. XGF v1.0 proteins	2024-01-31
Blastp of Citrus maxima cv. XGF v1.0 proteins vs UniProt TrEMBL	2024-01-31
Blastp of Citrus maxima cv. XGF v1.0 proteins vs UniProt Swissprot	2024-01-31
Blastp of Citrus maxima cv. XGF v1.0 proteins vs Araport11	2024-01-31

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
abhcmxL359	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
abhcmxL475	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
cizcmxL160	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cizcmxL232	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cccmxL178	Citrus clementina genome v1.0 (JGI)	Citrus clementina
cccmxL284	Citrus clementina genome v1.0 (JGI)	Citrus clementina
caucmxL329	Citrus australis genome v1.0 (UQ)	Citrus australis
caucmxL445	Citrus australis genome v1.0 (UQ)	Citrus australis
ccrcmxL0305	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcmxL0422	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcmxL0768	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrcmxL0870	Citrus australasica CRC3672 genome v1	Citrus australasica
clecmxL0141	Citrus limon cv. Eureka genome v1.0	Citrus limon
clecmxL0185	Citrus limon cv. Eureka genome v1.0	Citrus limon
cmcmxL544	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
clecmxL0367	Citrus limon cv. Eureka genome v1.0	Citrus limon
clecmxL0423	Citrus limon cv. Eureka genome v1.0	Citrus limon
cmxcmxR143	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cmjcmxL419	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
cmjcmxL553	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
cmxcsR198	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
cmxdvaR140	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
cmxdvaR141	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
cmxdvaR142	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
cmxdvbR147	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
cmxdvbR148	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
cmxdvbR149	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
cmxfhsR222	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
cmxfhsR223	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
cmxfhsR224	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
cmxzkR209	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
cmxzkR210	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
cmxswoR176	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
cmxswoR177	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
cmxswoR178	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XGF201540	XGF201540-XGF_v1	Citrus maxima	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
XGF201540.3.exon6	XGF201540.3.exon6-XGF_v1	Citrus maxima	exon
XGF201540.3.exon5	XGF201540.3.exon5-XGF_v1	Citrus maxima	exon
XGF201540.3.exon4	XGF201540.3.exon4-XGF_v1	Citrus maxima	exon
XGF201540.3.exon3	XGF201540.3.exon3-XGF_v1	Citrus maxima	exon
XGF201540.3.exon2	XGF201540.3.exon2-XGF_v1	Citrus maxima	exon
XGF201540.3.exon1	XGF201540.3.exon1-XGF_v1	Citrus maxima	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
XGF201540.3.utr3.1	XGF201540.3.utr3.1-XGF_v1	Citrus maxima	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
XGF201540.3.cds.6	XGF201540.3.cds.6-XGF_v1	Citrus maxima	CDS
XGF201540.3.cds.5	XGF201540.3.cds.5-XGF_v1	Citrus maxima	CDS
XGF201540.3.cds.4	XGF201540.3.cds.4-XGF_v1	Citrus maxima	CDS
XGF201540.3.cds.3	XGF201540.3.cds.3-XGF_v1	Citrus maxima	CDS
XGF201540.3.cds.2	XGF201540.3.cds.2-XGF_v1	Citrus maxima	CDS
XGF201540.3.cds.1	XGF201540.3.cds.1-XGF_v1	Citrus maxima	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
XGF201540.3.utr5.1	XGF201540.3.utr5.1-XGF_v1	Citrus maxima	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XGF201540.3-XGF_v1	XGF201540.3-XGF_v1	Citrus maxima	polypeptide
XGF201540.3-XGF_v1	XGF201540.3-XGF_v1-protein	Citrus maxima	polypeptide

Homology

[Close]

BLAST of XGF201540.3 vs. ExPASy TrEMBL
Match: A0A2H5Q591|A0A2H5Q591_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_197340 PE=4 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 1.007e-122
Identity = 174/176 (98.86%), Postives = 174/176 (98.86%), Query Frame = 0

Query:    1 MDVDSQPTMEETILVGDDLMMGPPSPLIPSEIASHVLEGVDLCDGILRNLFLCLQVNDIEPFCQEEIALYRECSEKRDKELRQRLQDSERKLGLSMPLDQAKERGTQLESEVTSLERRLILASGIEGIEGFRQRWSLHGRLTDIKQRLESLKDGIDKRKKDEPVKASSTAKKWFFW 176
            MDVDSQPTMEETILVGDDLMMGPPSPLIPSEIASHVLEGVDLCDGILRNLFLCLQVNDIEPFCQEEIALYRECSEKRDKELRQRLQDSERKLGLSMPLDQAKER TQLESEVTSLERRLILASGIEGIEGFRQRWSLHG LTDIKQRLESLKDGIDKRKKDEPVKASSTAKKWFFW
Sbjct:    1 MDVDSQPTMEETILVGDDLMMGPPSPLIPSEIASHVLEGVDLCDGILRNLFLCLQVNDIEPFCQEEIALYRECSEKRDKELRQRLQDSERKLGLSMPLDQAKERATQLESEVTSLERRLILASGIEGIEGFRQRWSLHGHLTDIKQRLESLKDGIDKRKKDEPVKASSTAKKWFFW 176

[Close]

BLAST of XGF201540.3 vs. ExPASy TrEMBL
Match: A0A067EBS3|A0A067EBS3_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g030497mg PE=4 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 1.258e-120
Identity = 171/176 (97.16%), Postives = 172/176 (97.73%), Query Frame = 0

Query:    1 MDVDSQPTMEETILVGDDLMMGPPSPLIPSEIASHVLEGVDLCDGILRNLFLCLQVNDIEPFCQEEIALYRECSEKRDKELRQRLQDSERKLGLSMPLDQAKERGTQLESEVTSLERRLILASGIEGIEGFRQRWSLHGRLTDIKQRLESLKDGIDKRKKDEPVKASSTAKKWFFW 176
            MDVDSQPTMEETILVGDDLMMGPPSPLIPSEIASHVLEGVDLCDGILRNLFLCLQVNDIEPFCQEEIALYRECSEKRDKELRQRLQDSERKLGLSMPLD+AKER TQLESEVTSLERRLILASGIEGIEGFRQRWSLHG LTDIKQRLESLKDGIDKRKKDEPVKASS  KKWFFW
Sbjct:    1 MDVDSQPTMEETILVGDDLMMGPPSPLIPSEIASHVLEGVDLCDGILRNLFLCLQVNDIEPFCQEEIALYRECSEKRDKELRQRLQDSERKLGLSMPLDRAKERATQLESEVTSLERRLILASGIEGIEGFRQRWSLHGHLTDIKQRLESLKDGIDKRKKDEPVKASSATKKWFFW 176

[Close]

BLAST of XGF201540.3 vs. ExPASy TrEMBL
Match: V4SAP1|V4SAP1_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029400mg PE=4 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 1.295e-115
Identity = 167/176 (94.89%), Postives = 169/176 (96.02%), Query Frame = 0

Query:    1 MDVDSQPTMEETILVGDDLMMGPPSPLIPSEIASHVLEGVDLCDGILRNLFLCLQVNDIEPFCQEEIALYRECSEKRDKELRQRLQDSERKLGLSMPLDQAKERGTQLESEVTSLERRLILASGIEGIEGFRQRWSLHGRLTDIKQRLESLKDGIDKRKKDEPVKASSTAKKWFFW 176
            MDVDSQPTMEETILVGDDLMMGPPSPLIPSEIASHVLEGVDLCDGILRNLFLCLQVNDIEPFCQEEIALYRECSEKRDKELRQRLQDSERKLGLSMPLDQAKER TQLESEVTSLE      SGIEGIEGFRQRW+LHGRLTDIK+RLESLKDGIDKRKKDEPVKASSTAKKWFFW
Sbjct:    1 MDVDSQPTMEETILVGDDLMMGPPSPLIPSEIASHVLEGVDLCDGILRNLFLCLQVNDIEPFCQEEIALYRECSEKRDKELRQRLQDSERKLGLSMPLDQAKERATQLESEVTSLE------SGIEGIEGFRQRWTLHGRLTDIKRRLESLKDGIDKRKKDEPVKASSTAKKWFFW 170

[Close]

BLAST of XGF201540.3 vs. ExPASy TrEMBL
Match: A0A2G9HU98|A0A2G9HU98_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_06203 PE=4 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 1.123e-107
Identity = 149/176 (84.66%), Postives = 164/176 (93.18%), Query Frame = 0

Query:    1 MDVDSQPTMEETILVGDDLMMGPPSPLIPSEIASHVLEGVDLCDGILRNLFLCLQVNDIEPFCQEEIALYRECSEKRDKELRQRLQDSERKLGLSMPLDQAKERGTQLESEVTSLERRLILASGIEGIEGFRQRWSLHGRLTDIKQRLESLKDGIDKRKKDEPVKASSTAKKWFFW 176
            MDVDS+PTMEETILVGDDLMMGPPSPLIP EIASHVLEGVDLCDGILRNLFLCLQ+NDIEPFCQ+EIALYREC+E+RDKELRQRLQDSERKLG+SMPL+QA ER  QLESE T LERRLILASG+EG+EGFRQRWSLHGRL+D K+RLE+LK G++ RKKDEPV  S+T KKWFFW
Sbjct:    1 MDVDSKPTMEETILVGDDLMMGPPSPLIPPEIASHVLEGVDLCDGILRNLFLCLQINDIEPFCQDEIALYRECAERRDKELRQRLQDSERKLGISMPLEQANERANQLESEATLLERRLILASGVEGMEGFRQRWSLHGRLSDTKRRLEALKQGMENRKKDEPVGESATKKKWFFW 176

[Close]

BLAST of XGF201540.3 vs. ExPASy TrEMBL
Match: A0A8T1NJN2|A0A8T1NJN2_CARIL (Uncharacterized protein OS=Carya illinoinensis OX=32201 GN=CIPAW_13G138500 PE=4 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 2.725e-107
Identity = 152/176 (86.36%), Postives = 164/176 (93.18%), Query Frame = 0

Query:    1 MDVDSQPTMEETILVGDDLMMGPPSPLIPSEIASHVLEGVDLCDGILRNLFLCLQVNDIEPFCQEEIALYRECSEKRDKELRQRLQDSERKLGLSMPLDQAKERGTQLESEVTSLERRLILASGIEGIEGFRQRWSLHGRLTDIKQRLESLKDGIDKRKKDEPVKASSTAKKWFFW 176
            MDVD+QPTMEETILVGDDLMMGPPSPLIP EIASHVLEGVDLCDGILRNLFLCLQ+NDIEPFCQ+EIALYR+C++KRDKELRQRLQDSERKLGLSMPLD+AKER  QLESEVTSLERRLILA+G EG+EGFRQRWSLHGRLTD K+RLESL  GI+ RKKDEPV   STAK+W FW
Sbjct:    1 MDVDAQPTMEETILVGDDLMMGPPSPLIPPEIASHVLEGVDLCDGILRNLFLCLQINDIEPFCQDEIALYRQCADKRDKELRQRLQDSERKLGLSMPLDEAKERAAQLESEVTSLERRLILATGTEGMEGFRQRWSLHGRLTDTKRRLESLNQGIENRKKDEPV-GGSTAKRWSFW 175

[Close]

BLAST of XGF201540.3 vs. ExPASy TrEMBL
Match: A0A9J5WQ29|A0A9J5WQ29_SOLCO (Uncharacterized protein OS=Solanum commersonii OX=4109 GN=H5410_058103 PE=4 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 5.693e-107
Identity = 149/176 (84.66%), Postives = 165/176 (93.75%), Query Frame = 0

Query:    1 MDVDSQPTMEETILVGDDLMMGPPSPLIPSEIASHVLEGVDLCDGILRNLFLCLQVNDIEPFCQEEIALYRECSEKRDKELRQRLQDSERKLGLSMPLDQAKERGTQLESEVTSLERRLILASGIEGIEGFRQRWSLHGRLTDIKQRLESLKDGIDKRKKDEPVKASSTAKKWFFW 176
            MDVDSQ TMEETILVGDDLMMGPPSP+IP EIASHVLEGVDLCDGILRNLFLCLQ+NDIEPFCQ+EIALYR+C+E+RDKELRQRLQDSE+KLG+SMPLDQAKER TQLESEVTSLER LILASG+EG+EGFRQRWSLHGR+TDIK+RLE+LK G++ RKKDEP +  ST KKW FW
Sbjct:    1 MDVDSQQTMEETILVGDDLMMGPPSPVIPPEIASHVLEGVDLCDGILRNLFLCLQINDIEPFCQDEIALYRQCAERRDKELRQRLQDSEQKLGMSMPLDQAKERATQLESEVTSLERHLILASGVEGMEGFRQRWSLHGRVTDIKRRLEALKGGMENRKKDEPAENISTKKKWSFW 176

[Close]

BLAST of XGF201540.3 vs. ExPASy TrEMBL
Match: A0A6P8E2U6|A0A6P8E2U6_PUNGR (Uncharacterized protein LOC116210128 OS=Punica granatum OX=22663 GN=LOC116210128 PE=4 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 5.767e-107
Identity = 149/177 (84.18%), Postives = 167/177 (94.35%), Query Frame = 0

Query:    1 MDVDSQPTMEETILVGDDLMMGPPSPLIPSEIASHVLEGVDLCDGILRNLFLCLQVNDIEPFCQEEIALYRECSEKRDKELRQRLQDSERKLGLSMPLDQAKERGTQLESEVTSLERRLILASGIEGIEGFRQRWSLHGRLTDIKQRLESLKDGIDKRKKDEPVKAS-STAKKWFFW 176
            MDVDSQPTMEETILVGDDLMMGPPSPLIP EIASHVLEGVDLCDGILRNLFLCLQ+NDIEPFCQ+EI LYR+C+EKRDKELRQRLQ+SERKLGLSMPL++A +R +QL++EVTSLERRLILASGIEG+EGFRQRWSLHGRLTD KQRL SLKDGI+ RKKDEPV+ + + +K+WFFW
Sbjct:    1 MDVDSQPTMEETILVGDDLMMGPPSPLIPPEIASHVLEGVDLCDGILRNLFLCLQINDIEPFCQDEIVLYRQCAEKRDKELRQRLQESERKLGLSMPLNEASDRASQLQAEVTSLERRLILASGIEGMEGFRQRWSLHGRLTDTKQRLGSLKDGIENRKKDEPVRVNKANSKRWFFW 177

[Close]

BLAST of XGF201540.3 vs. ExPASy TrEMBL
Match: A0A5D2U993|A0A5D2U993_GOSMU (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D07G123500v1 PE=4 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 6.553e-107
Identity = 153/176 (86.93%), Postives = 166/176 (94.32%), Query Frame = 0

Query:    1 MDVDSQPTMEETILVGDDLMMGPPSPLIPSEIASHVLEGVDLCDGILRNLFLCLQVNDIEPFCQEEIALYRECSEKRDKELRQRLQDSERKLGLSMPLDQAKERGTQLESEVTSLERRLILASGIEGIEGFRQRWSLHGRLTDIKQRLESLKDGIDKRKKDEPVKASSTAKKWFFW 176
            MDVDSQPTMEETILVGDDLMMGPPSP+IP EIASHVLEGV+LCDGILRNLFLCLQ+NDIEPFCQ+E+ALYR+C+EKRDKELRQRLQDSERKLGLSMP DQAKER +QLESEVTSLERRLILASGIEGIEGFRQRWSLHGRLTD K+RLESLK G++KRK+DEP K +ST K  FFW
Sbjct:    1 MDVDSQPTMEETILVGDDLMMGPPSPVIPQEIASHVLEGVELCDGILRNLFLCLQINDIEPFCQDELALYRQCAEKRDKELRQRLQDSERKLGLSMPFDQAKERASQLESEVTSLERRLILASGIEGIEGFRQRWSLHGRLTDTKKRLESLKLGMEKRKEDEPSK-TSTRKSGFFW 175

[Close]

BLAST of XGF201540.3 vs. ExPASy TrEMBL
Match: A0A5D2BVU4|A0A5D2BVU4_GOSDA (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D07G126800v1 PE=4 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 6.553e-107
Identity = 153/176 (86.93%), Postives = 166/176 (94.32%), Query Frame = 0

Query:    1 MDVDSQPTMEETILVGDDLMMGPPSPLIPSEIASHVLEGVDLCDGILRNLFLCLQVNDIEPFCQEEIALYRECSEKRDKELRQRLQDSERKLGLSMPLDQAKERGTQLESEVTSLERRLILASGIEGIEGFRQRWSLHGRLTDIKQRLESLKDGIDKRKKDEPVKASSTAKKWFFW 176
            MDVDSQPTMEETILVGDDLMMGPPSP+IP EIASHVLEGV+LCDGILRNLFLCLQ+NDIEPFCQ+E+ALYR+C+EKRDKELRQRLQDSERKLGLSMP DQAKER +QLESEVTSLERRLILASGIEGIEGFRQRWSLHGRLTD K+RLESLK G++KRK+DEP K +ST K  FFW
Sbjct:    1 MDVDSQPTMEETILVGDDLMMGPPSPVIPQEIASHVLEGVELCDGILRNLFLCLQINDIEPFCQDELALYRQCAEKRDKELRQRLQDSERKLGLSMPFDQAKERASQLESEVTSLERRLILASGIEGIEGFRQRWSLHGRLTDTKKRLESLKLGMEKRKEDEPSK-TSTRKSGFFW 175

[Close]

BLAST of XGF201540.3 vs. ExPASy TrEMBL
Match: A0A5D2K6X5|A0A5D2K6X5_GOSTO (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D07G125600v1 PE=4 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 6.553e-107
Identity = 153/176 (86.93%), Postives = 166/176 (94.32%), Query Frame = 0

Query:    1 MDVDSQPTMEETILVGDDLMMGPPSPLIPSEIASHVLEGVDLCDGILRNLFLCLQVNDIEPFCQEEIALYRECSEKRDKELRQRLQDSERKLGLSMPLDQAKERGTQLESEVTSLERRLILASGIEGIEGFRQRWSLHGRLTDIKQRLESLKDGIDKRKKDEPVKASSTAKKWFFW 176
            MDVDSQPTMEETILVGDDLMMGPPSP+IP EIASHVLEGV+LCDGILRNLFLCLQ+NDIEPFCQ+E+ALYR+C+EKRDKELRQRLQDSERKLGLSMP DQAKER +QLESEVTSLERRLILASGIEGIEGFRQRWSLHGRLTD K+RLESLK G++KRK+DEP K +ST K  FFW
Sbjct:    1 MDVDSQPTMEETILVGDDLMMGPPSPVIPQEIASHVLEGVELCDGILRNLFLCLQINDIEPFCQDELALYRQCAEKRDKELRQRLQDSERKLGLSMPFDQAKERASQLESEVTSLERRLILASGIEGIEGFRQRWSLHGRLTDTKKRLESLKLGMEKRKEDEPSK-TSTRKSGFFW 175

[Close]

BLAST of XGF201540.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:2024873-2026330 FORWARD LENGTH=184)

HSP 1 Score: 277.33 bits (708), Expect = 2.632e-96
Identity = 138/186 (74.19%), Postives = 156/186 (83.87%), Query Frame = 0

Query:    1 MDVDSQPTMEETILVGDDLMMGPPSPLIPSEIASHVLEGVDLCDGILRNLFLCLQVNDIEPFCQEEIALYRECSEKRDKELRQRLQDSERKLGLSMPLDQAKERGTQLESEVTSLERRLILASGIEGIEGFRQRWSLHGRLTDIKQRLESLKDGIDKRKK---------DEPVKASSTAKKWFFW* 177
            MDVDSQP MEETILVGDDLM GPPSP+IP EIASHVLEGVDLCDGILRNLFLCLQ+NDIEPFCQ+E+ALYR+C+EKRDK LR RLQ+SE KLGLSMP++ AKER TQLE+E TS ER LILASG EGIEGFR+RWSLHGR+TD K+RLESLK G++ R K         D+  K S+  K+WFFW*
Sbjct:    1 MDVDSQPMMEETILVGDDLMTGPPSPVIPPEIASHVLEGVDLCDGILRNLFLCLQINDIEPFCQDELALYRQCAEKRDKILRVRLQESEHKLGLSMPIELAKERITQLEAEATSFERHLILASGAEGIEGFRRRWSLHGRMTDTKKRLESLKQGMENRNKVEHEHNQHHDQSPKPSA-PKRWFFW* 185

[Close]

BLAST of XGF201540.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:2024873-2026330 FORWARD LENGTH=134)

HSP 1 Score: 174.866 bits (442), Expect = 1.651e-56
Identity = 88/132 (66.67%), Postives = 103/132 (78.03%), Query Frame = 0

Query:   54 LQVNDIEPFCQEEIALYRECSEKRDKELRQRLQDSERKLGLSMPLDQAKERGTQLESEVTSLERRLILASGIEGIEGFRQRWSLHGRLTDIKQRLESLKDGIDKRKKDEPVKAS--------STAKKWFFW* 177
            LQ+NDIEPFCQ+E+ALYR+C+EKRDK LR RLQ+SE KLGLSMP++ AKER TQLE+E TS ER LILASG EGIEGFR+RWSLHGR+TD K+RLESLK G++ R K E             S  K+WFFW*
Sbjct:    4 LQINDIEPFCQDELALYRQCAEKRDKILRVRLQESEHKLGLSMPIELAKERITQLEAEATSFERHLILASGAEGIEGFRRRWSLHGRMTDTKKRLESLKQGMENRNKVEHEHNQHHDQSPKPSAPKRWFFW* 135

[Close]

BLAST of XGF201540.3 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:2024877-2026330 FORWARD LENGTH=108)

HSP 1 Score: 130.183 bits (326), Expect = 2.929e-39
Identity = 69/108 (63.89%), Postives = 79/108 (73.15%), Query Frame = 0

Query:   78 DKELRQRLQDSERKLGLSMPLDQAKERGTQLESEVTSLERRLILASGIEGIEGFRQRWSLHGRLTDIKQRLESLKDGIDKRKKDEPVKAS--------STAKKWFFW* 177
            DK LR RLQ+SE KLGLSMP++ AKER TQLE+E TS ER LILASG EGIEGFR+RWSLHGR+TD K+RLESLK G++ R K E             S  K+WFFW*
Sbjct:    2 DKILRVRLQESEHKLGLSMPIELAKERITQLEAEATSFERHLILASGAEGIEGFRRRWSLHGRMTDTKKRLESLKQGMENRNKVEHEHNQHHDQSPKPSAPKRWFFW* 109

The following BLAST results are available for this feature:

BLAST of XGF201540.3 vs. ExPASy TrEMBL
BLAST of XGF201540.3 vs. ExPASy TrEMBL
BLAST of XGF201540.3 vs. Araport11

BLAST of XGF201540.3 vs. ExPASy TrEMBL
Analysis Date: 2024-01-31 (Blastp of Citrus maxima cv. XGF v1.0 proteins vs UniProt TrEMBL)
Total hits: 10

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A2H5Q591\|A0A2H5Q591_CITUN	1.007e-122	98.86	Uncharacterized protein OS=Citrus unshiu OX=55188 ...	[more]
A0A067EBS3\|A0A067EBS3_CITSI	1.258e-120	97.16	Uncharacterized protein OS=Citrus sinensis OX=2711...	[more]
V4SAP1\|V4SAP1_CITCL	1.295e-115	94.89	Uncharacterized protein OS=Citrus clementina OX=85...	[more]
A0A2G9HU98\|A0A2G9HU98_9LAMI	1.123e-107	84.66	Uncharacterized protein OS=Handroanthus impetigino...	[more]
A0A8T1NJN2\|A0A8T1NJN2_CARIL	2.725e-107	86.36	Uncharacterized protein OS=Carya illinoinensis OX=...	[more]
A0A9J5WQ29\|A0A9J5WQ29_SOLCO	5.693e-107	84.66	Uncharacterized protein OS=Solanum commersonii OX=...	[more]
A0A6P8E2U6\|A0A6P8E2U6_PUNGR	5.767e-107	84.18	Uncharacterized protein LOC116210128 OS=Punica gra...	[more]
A0A5D2U993\|A0A5D2U993_GOSMU	6.553e-107	86.93	Uncharacterized protein OS=Gossypium mustelinum OX...	[more]
A0A5D2BVU4\|A0A5D2BVU4_GOSDA	6.553e-107	86.93	Uncharacterized protein OS=Gossypium darwinii OX=3...	[more]
A0A5D2K6X5\|A0A5D2K6X5_GOSTO	6.553e-107	86.93	Uncharacterized protein OS=Gossypium tomentosum OX...	[more]

BLAST of XGF201540.3 vs. ExPASy TrEMBL
Analysis Date: 2024-01-31 (Blastp of Citrus maxima cv. XGF v1.0 proteins vs UniProt Swissprot)
Total hits: 0

Position :

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Match Name	E-value	Identity	Description

BLAST of XGF201540.3 vs. Araport11
Analysis Date: 2024-01-31 (Blastp of Citrus maxima cv. XGF v1.0 proteins vs Araport11)
Total hits: 3

Position :

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Match Name	E-value	Identity	Description
\|	2.632e-96	74.19	Symbols: no symbol available \| no full name availa...	[more]
\|	1.651e-56	66.67	Symbols: no symbol available \| no full name availa...	[more]
\|	2.929e-39	63.89	Symbols: no symbol available \| no full name availa...	[more]

InterPro

Analysis Name: InterProScan Analysis for Citrus maxima cv. XGF v1.0 proteins
Date Performed: 2024-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36047	OS01G0191000 PROTEIN	coord: 1..176

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at utg288:415080..418843-
coding sequence from alignment at utg288:415080..418843-

mRNA sequence

>XGF201540.3-XGF_v1 ID=XGF201540.3-XGF_v1; Name=XGF201540.3; organism=Citrus maxima; type=mRNA; length=531bp
ATGGATGTTGATTCACAGCCAACTATGGAAGAAACTATACTTGTGGGTGA
TGATCTAATGATGGGGCCACCATCTCCTCTCATCCCATCAGAAATTGCTT
CTCATGTGCTTGAAGGTGTTGATTTATGTGATGGGATTTTGAGAAATCTA
TTCTTGTGCTTGCAAGTCAATGATATTGAACCATTCTGTCAGGAAGAGAT
TGCTTTGTATCGAGAATGTTCCGAAAAGAGGGACAAGGAACTGCGGCAAC
GGCTTCAAGATAGTGAGCGCAAGTTGGGATTATCAATGCCTTTAGATCAA
GCAAAGGAAAGAGGTACTCAACTTGAATCAGAAGTCACATCATTGGAGAG
GCGTTTGATTCTTGCTAGTGGAATTGAAGGAATTGAAGGATTTCGTCAGA
GATGGAGTTTACATGGTCGTCTTACTGATATAAAGCAAAGGCTGGAATCC
TTAAAGGACGGAATTGACAAAAGAAAAAAAGATGAACCAGTAAAAGCTTC
TTCAACTGCAAAAAAGTGGTTCTTTTGGTGA

protein sequence of XGF201540.3-XGF_v1

>XGF201540.3-XGF_v1 ID=XGF201540.3-XGF_v1; Name=XGF201540.3-XGF_v1; organism=Citrus maxima; type=polypeptide; length=177bp
MDVDSQPTMEETILVGDDLMMGPPSPLIPSEIASHVLEGVDLCDGILRNL
FLCLQVNDIEPFCQEEIALYRECSEKRDKELRQRLQDSERKLGLSMPLDQ
AKERGTQLESEVTSLERRLILASGIEGIEGFRQRWSLHGRLTDIKQRLES
LKDGIDKRKKDEPVKASSTAKKWFFW*

mRNA from alignment at utg288:415080..418843-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=3764bp; location=Sequence derived from: utg288:415080..418843- (Citrus maxima
AAAAAAAGAACACATTTAGGGGTGGTGCAACCGCAGCAATTTTAACGATG
TCTATAGCCTGTTCGATGAAATGCCTCAAAAAAAGTGTCTTTCTGTTTGG
TCAATCAAAACGCATTGTAGTTACTTGCTTCGCGTTTTTGTAGTGATGCT
TGTTTTGAATTGATGTCATGAACTTGGATGATTCCAGTTCATTCGTACTT
ATTCTACTACTTTCTTTGTTGCAGATTAAAGCTTTTGACTCAGTCACCGG
TAAAGAGTTTTATTAAGCAGAAGCAGTCATGGATGGTATGTGGAAACTGC
TACATTTCTTTTATAGTTATCAATGAAAAAATTGTAATTTTCTTGTTCAA
TGAATTTGGCTTCAATTATAGTTTTCAAGATCTTATGAGTTTATGCCTTG
AAGTTTATGCCTCGGTCTATATTCCCTTATGTCCATCCTTATGTACATTG
CATGTGAAAGCAACGTTTTGAGGCTATACTTTAATTTTATTCATGATTTT
GTGGTTGCCTTTTGTGAACTTCAGTTGATTCACAGCCAACTATGGAAGAA
ACTATACTTGTGGGTGATGATCTAATGATGGGGCCACCATCTCCTCTCAT
CCCATCAGAAATTGCTTCTCATGTGCTTGAAGGTGTTGATTTATGTGATG
GGATTTTGAGAAATCTATTCTTGTGTAAGTCCCTCTTTTTTTTTTTTTTT
TTGTCTGTAGATTTTACTCTTATCAAATTTAGCTTTCAAATTGTATTGTG
TTTATTAGTGTTGGGAGAGAGTCATTCTTGTAGTGGTTCAAGCCATACTA
CTGTTTACAAAATTCAAATTGGAAAAAACCAAGTTCCTTTTCTATTAGGC
CCCAAAAAAACTGTATCGATAATTACCAGATTCTTGTAAGTTTTATGCAG
AAGGTGAACAATTTACATGAGTTTTCAATGACTGCAAACTAATATGCCTG
ATTTGGGTGTGTGTGATGATGGAATATAGTTAAAGATTGAACAATCAGTC
ACATAGCCATTGAATGCTGTGAAGTGTATGAGATGTACAGCTAACACCTC
AGGGGTTCAACATTCAGGTTCCATATAAATTAATTTAAAGTACACTTTTG
AAAGTGAGACTTTTTTTTATGTTGCAGGCTTGCAAGTCAATGATATTGAA
CCATTCTGTCAGGAAGAGATTGCTTTGTATCGAGAATGTTCCGAAAAGAG
GGTTAGATATTTAGATTTTTTGTGTTTCTTTCCTTCAATTGCTTAAATTT
ATTTGACGTGTATGTCAGTATTTGCTATTGAAGTATCAATATCTTCTGCT
CAAATGAGTTGCAGGACAAGGAACTGCGGCAACGGCTTCAAGATAGTGAG
CGCAAGTTGGGATTATCAATGCCTTTAGATCAAGCAAAGGAAAGAGGTAC
TCAACTTGAATCAGAAGTCACATCATTGGAGAGGTCATTTCTTGACTCAT
TTAATTGTCCTTAATGGTGGTCTAATTACGGTTCACCTCTGGAAATGACT
CCTATCATTTCCTCTAATCACTTGTAGGCGTTTGATTCTTGCTAGTGGAA
TTGAAGGAATTGAAGGATTTCGTCAGAGATGGAGTTTACATGGTCGTCTT
ACTGATATAAAGTAATGTTCATATAAATCATAGCTGCTATTTCTTCTTGA
TGGCTCTTCTAATTGTTGAACAATTGATAATGCTTAGGTTCTCACCATTC
ATAGACTAACCTACTCAACCATGTACGAATTGCATTTTTTTTCTTTTACA
CAGGCAAAGGCTGGAATCCTTAAAGGACGGAATTGACAAAAGAAAAAAAG
ATGAACCAGTAAAAGCTTCTTCAACTGCAAAAAAGTGGTTCTTTTGGTGA
ATATAGTTACTGCATTATATGGCTTCATTTTTGGTTAAAATTAAAAATAA
CTCCAGCAGCTGCCTGGAAGAAGATGATATACCAAGCATTCAATATTACT
GGATATAGCCAGTTGGAATTGATGCCTCTGTTTTGCATGTAGTTTCAATC
TTTTGTTCTTAAATTGTAACAATATCCCTGGCATTTTACCATGTGGTTGG
TATCCATAGCAAAAGTACACTTAAAAATTTTCATAAATGCTTAGTAGGTT
ATGTAGACAATTGTACTTTACAAATTCGATTACAAAGACCAATTGGGAGG
GTACATCCGGCTAAGATTTTTGTGTTGTCAAAGCTTAGGTGCATGATGCA
AATGGGGTGTATTTAAGGTATTTATACACAATGATGCAATTTAATTAAAA
ATTATTGATCATGAAAGAAAAAATGAGAGCTATATACACAGTATAGAATA
ATATATTATATATTGGCCACTACTGGATTTTTTGAACCAAAAATGTGATT
GTTGAAATAGCATAAAATCCCAGGCAGTAGGCTATTCTTATCTTCTACAG
CCACTGAAGGTGAAAGGGTGTAATGGGACCTAGTAATCTTGATCGATCAC
CAAATTCCCCTGGGTAACATTCAACTGTGATTTTTTCTTTAACCACCTCC
CTGAATTTGCCCCCTTCTCTGAATGCTTGTCATCATTCTCCATCTAAATC
TGTTTGGTGTTACGTTCTTACCGTTATGTACAGTGCTGGAGCTCAAGACA
GCAGGGTTGAAATTAGTCAGGAAAGTGTAACATTGTCAGATTTATGAATG
TGAAGAGCCACAGGTCAACCGCTACTGAACTTCTAAAATCCATGAGGTAC
ATTCCTGGAGGAGTTGAAACCCCTGTCGATTAGCTATGTTTAAGAAAATC
TGCATTTTGCTGCAGAAATCAGACGCGTCTTCCTTGCACCTAAATGAACC
AGCACATGCACATTGTTCAGCTAAATGAGCAGCTTTCACCTGGTTGCACC
TAATGCATACCAGATCCTGTAGATGGTAGAGCCGCTCTCTCTGACGAACA
ATTTGAAGAAGAGCATTCTCCATCACCTCACGGTCATAAGGCTGGCCACA
CTGTGGCATGGCACAATGCCAATCCTGAGCCAGTAAAGCCATGTCACGGC
ACAAGTCCAAGTCTCGACAGTCATTGCAGTAGCTGGCAAAAAAAAAAACT
GGGAATCAAAATAAGTTTGCCAAAGAACAGTTAAACCTAATATTTGGATC
AAAGAACTCAAATTCAAGTGAAGAAAATATTAGTTTCACTAGCTTGTATT
GTAAATGATGGTAAGAATACCTAGGAATCAGCATTCCATAGTAGCTAAAA
GAATCAGCCTTGGTAAGACATTCTGTAATTGTTTCCCAAGGTAGTCTAAA
TCCAACTAGTATCTCTGTTACTAAGAAGCTTCAAGATTCTTCCTCTCCAT
ACATCTAAATTTGGGGGCGTTTTGGGTCAACCAAGTGAAATTCTCAGTTG
CATTTTACTTGTTTTCAAATGATAGTCTCATAGACCCAACACTTTCACGT
AGGATAGCTGATCAGTATACAATTCTGTAAATCTTTTTTCTGATCTTCTA
GGGCATCTTTTAAGTGGACTTCTTATTTACCTTTTTGTATATCTCTTCTC
TTTAGCATAAATTTCTTTATTTCATGTCCAAAAATGAATATTCAAACCAT
TGGATCTAACAAATACCTATTCTACCTAAACAATTGCTATTAACCAACAA
CATTCCTCTCAAAGCCTATACTCATGCAATTGCCACTAGCCCTAGTGTTG
GTCTATTTAAGAAATATAAGTTCTAATAAGAATTATTGTAAGTATCAAAT
ACTTATGCTCTGTCAAAATATAGGATATCGGTTGCCAAAACCTGCAAATG
ACGTTCGGTAAGAT

Coding sequence (CDS) from alignment at utg288:415080..418843-

>XGF201540.3-XGF_v1 ID=XGF201540.3-XGF_v1; Name=XGF201540.3; organism=Citrus maxima; type=CDS; length=531bp; location=Sequence derived from: utg288:415080..418843- (Citrus maxima
ATGGATGTTGATTCACAGCCAACTATGGAAGAAACTATACTTGTGGGTGA
TGATCTAATGATGGGGCCACCATCTCCTCTCATCCCATCAGAAATTGCTT
CTCATGTGCTTGAAGGTGTTGATTTATGTGATGGGATTTTGAGAAATCTA
TTCTTGTGCTTGCAAGTCAATGATATTGAACCATTCTGTCAGGAAGAGAT
TGCTTTGTATCGAGAATGTTCCGAAAAGAGGGACAAGGAACTGCGGCAAC
GGCTTCAAGATAGTGAGCGCAAGTTGGGATTATCAATGCCTTTAGATCAA
GCAAAGGAAAGAGGTACTCAACTTGAATCAGAAGTCACATCATTGGAGAG
GCGTTTGATTCTTGCTAGTGGAATTGAAGGAATTGAAGGATTTCGTCAGA
GATGGAGTTTACATGGTCGTCTTACTGATATAAAGCAAAGGCTGGAATCC
TTAAAGGACGGAATTGACAAAAGAAAAAAAGATGAACCAGTAAAAGCTTC
TTCAACTGCAAAAAAGTGGTTCTTTTGGTGA