eg_v1.0.alternate_g1231.t1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of eg_v1.0.alternate_g1231.t1 vs. ExPASy TrEMBL
Match: V4UF35|V4UF35_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009919mg PE=3 SV=1) HSP 1 Score: 251.136 bits (640), Expect = 2.535e-84 Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0 Query: 1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFWKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV 122
MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAF KELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV
Sbjct: 1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV 122
BLAST of eg_v1.0.alternate_g1231.t1 vs. ExPASy TrEMBL
Match: A0A067EVX0|A0A067EVX0_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g033306mg PE=3 SV=1) HSP 1 Score: 251.136 bits (640), Expect = 2.535e-84 Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0 Query: 1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFWKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV 122
MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAF KELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV
Sbjct: 1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV 122
BLAST of eg_v1.0.alternate_g1231.t1 vs. ExPASy TrEMBL
Match: A0A6A6LU67|A0A6A6LU67_HEVBR (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_026571 PE=3 SV=1) HSP 1 Score: 240.736 bits (613), Expect = 3.722e-80 Identity = 114/121 (94.21%), Postives = 119/121 (98.35%), Query Frame = 0 Query: 1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFWKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYY 121
MASKLQQLQSKACQASKF+S+HGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIP R E+FWKELDY+KNLWKNRQ+LKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYY
Sbjct: 1 MASKLQQLQSKACQASKFLSKHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPNRYESFWKELDYMKNLWKNRQELKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYY 121
BLAST of eg_v1.0.alternate_g1231.t1 vs. ExPASy TrEMBL
Match: A0A7J8MTL5|A0A7J8MTL5_9ROSI (Uncharacterized protein (Fragment) OS=Gossypium lobatum OX=34289 GN=Golob_005584 PE=3 SV=1) HSP 1 Score: 240.35 bits (612), Expect = 3.210e-79 Identity = 114/121 (94.21%), Postives = 118/121 (97.52%), Query Frame = 0 Query: 1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFWKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYY 121
MASKLQQLQSKACQASKFV+++GTAYYKQLLEQNKQYIQEPPTVEKCN LSKQLFYTRLASIP R EAFWKELDYVKNLWKNRQ+LKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYY
Sbjct: 53 MASKLQQLQSKACQASKFVAKNGTAYYKQLLEQNKQYIQEPPTVEKCNELSKQLFYTRLASIPGRNEAFWKELDYVKNLWKNRQELKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYY 173
BLAST of eg_v1.0.alternate_g1231.t1 vs. ExPASy TrEMBL
Match: A0A6M2EST4|A0A6M2EST4_9ROSI (Uncharacterized protein OS=Populus davidiana OX=266767 PE=3 SV=1) HSP 1 Score: 238.039 bits (606), Expect = 3.942e-79 Identity = 112/122 (91.80%), Postives = 119/122 (97.54%), Query Frame = 0 Query: 1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFWKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV 122
MASKL QLQSKACQASKFVS+HG+AYYKQLLEQNKQYIQ+PP+VEKCNLLSKQLFYTRLASIP R EAFWKELDYVK+LWK+RQ+LKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV
Sbjct: 1 MASKLTQLQSKACQASKFVSKHGSAYYKQLLEQNKQYIQDPPSVEKCNLLSKQLFYTRLASIPVRSEAFWKELDYVKHLWKHRQELKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV 122
BLAST of eg_v1.0.alternate_g1231.t1 vs. ExPASy TrEMBL
Match: A9PAP2|A9PAP2_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G055700 PE=2 SV=1) HSP 1 Score: 238.039 bits (606), Expect = 3.942e-79 Identity = 112/122 (91.80%), Postives = 119/122 (97.54%), Query Frame = 0 Query: 1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFWKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV 122
MASKL QLQSKACQASKFVS+HG+AYYKQLLEQNKQYIQ+PP+VEKCNLLSKQLFYTRLASIP R EAFWKELDYVK+LWK+RQ+LKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV
Sbjct: 1 MASKLTQLQSKACQASKFVSKHGSAYYKQLLEQNKQYIQDPPSVEKCNLLSKQLFYTRLASIPVRSEAFWKELDYVKHLWKHRQELKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV 122
BLAST of eg_v1.0.alternate_g1231.t1 vs. ExPASy TrEMBL
Match: A0A4U5M9U0|A0A4U5M9U0_POPAL (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000254660 PE=3 SV=1) HSP 1 Score: 238.039 bits (606), Expect = 3.942e-79 Identity = 112/122 (91.80%), Postives = 119/122 (97.54%), Query Frame = 0 Query: 1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFWKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV 122
MASKL QLQSKACQASKFVS+HG+AYYKQLLEQNKQYIQ+PP+VEKCNLLSKQLFYTRLASIP R EAFWKELDYVK+LWK+RQ+LKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV
Sbjct: 1 MASKLTQLQSKACQASKFVSKHGSAYYKQLLEQNKQYIQDPPSVEKCNLLSKQLFYTRLASIPVRSEAFWKELDYVKHLWKHRQELKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV 122
BLAST of eg_v1.0.alternate_g1231.t1 vs. ExPASy TrEMBL
Match: A0A6P5ZAS8|A0A6P5ZAS8_DURZI (uncharacterized protein LOC111299152 isoform X1 OS=Durio zibethinus OX=66656 GN=LOC111299152 PE=3 SV=1) HSP 1 Score: 238.039 bits (606), Expect = 3.985e-79 Identity = 113/122 (92.62%), Postives = 117/122 (95.90%), Query Frame = 0 Query: 1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFWKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV 122
MASKLQQLQSKACQASKFV+ HGTAYYKQLLEQNKQYIQEPPTV+KCN LSKQLFYTRL SIP R E+FWKELDYVKNLWKNRQ+LKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV
Sbjct: 1 MASKLQQLQSKACQASKFVATHGTAYYKQLLEQNKQYIQEPPTVQKCNELSKQLFYTRLTSIPGRSESFWKELDYVKNLWKNRQELKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV 122
BLAST of eg_v1.0.alternate_g1231.t1 vs. ExPASy TrEMBL
Match: A0A2C9W6L0|A0A2C9W6L0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G030700 PE=3 SV=1) HSP 1 Score: 238.039 bits (606), Expect = 4.210e-79 Identity = 114/121 (94.21%), Postives = 117/121 (96.69%), Query Frame = 0 Query: 1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFWKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYY 121
MASKLQQLQSKACQASKFV +HGTAYYKQLLEQNKQYIQEPPTVEKC LLSKQLFYTRLASIP R EAFWKELDYVKNLWKNRQ+LKVEDAGIAALFGLECFAW+CAGEIVGRGFTFTGYY
Sbjct: 1 MASKLQQLQSKACQASKFVCKHGTAYYKQLLEQNKQYIQEPPTVEKCTLLSKQLFYTRLASIPNRYEAFWKELDYVKNLWKNRQELKVEDAGIAALFGLECFAWYCAGEIVGRGFTFTGYY 121
BLAST of eg_v1.0.alternate_g1231.t1 vs. ExPASy TrEMBL
Match: A0A061GLW7|A0A061GLW7_THECC (Mitochondrial ATP synthase subunit G protein OS=Theobroma cacao OX=3641 GN=TCM_037705 PE=3 SV=1) HSP 1 Score: 238.039 bits (606), Expect = 4.698e-79 Identity = 113/122 (92.62%), Postives = 118/122 (96.72%), Query Frame = 0 Query: 1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFWKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV 122
MASKLQQLQSKACQASKFVS+HGTAYY+QLLEQNKQYIQEPPTVEKCN LSKQL YTRLASIP R E+FWKELDYVKNLWKNRQ+LKVEDAGIAALFGLECFAW+CAGEIVGRGFTFTGYYV
Sbjct: 1 MASKLQQLQSKACQASKFVSKHGTAYYRQLLEQNKQYIQEPPTVEKCNELSKQLLYTRLASIPGRYESFWKELDYVKNLWKNRQELKVEDAGIAALFGLECFAWYCAGEIVGRGFTFTGYYV 122
BLAST of eg_v1.0.alternate_g1231.t1 vs. Araport11
Match: AT4G26210.2 (| Mitochondrial ATP synthase subunit G protein | Chr4:13282370-13283118 FORWARD LENGTH=122 | 201606) HSP 1 Score: 216.083 bits (549), Expect = 6.022e-74 Identity = 100/121 (82.64%), Postives = 111/121 (91.74%), Query Frame = 0 Query: 1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFWKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYY 121
MASKL QL+SKAC+ASKFVS+HGT YYKQLL++NK YIQEP T+EKCN LSKQL YTRLASIP R E+FWKE+++VK LWKNR DLKVEDAGIAALFGLECFAW+CAGEIVGRGFTFTGYY
Sbjct: 1 MASKLLQLKSKACEASKFVSKHGTTYYKQLLDKNKMYIQEPATIEKCNELSKQLLYTRLASIPGRSESFWKEVNHVKGLWKNRADLKVEDAGIAALFGLECFAWYCAGEIVGRGFTFTGYY 121
BLAST of eg_v1.0.alternate_g1231.t1 vs. Araport11
Match: AT4G26210.1 (| Mitochondrial ATP synthase subunit G protein | Chr4:13282370-13283118 FORWARD LENGTH=122 | 201606) HSP 1 Score: 216.083 bits (549), Expect = 6.022e-74 Identity = 100/121 (82.64%), Postives = 111/121 (91.74%), Query Frame = 0 Query: 1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFWKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYY 121
MASKL QL+SKAC+ASKFVS+HGT YYKQLL++NK YIQEP T+EKCN LSKQL YTRLASIP R E+FWKE+++VK LWKNR DLKVEDAGIAALFGLECFAW+CAGEIVGRGFTFTGYY
Sbjct: 1 MASKLLQLKSKACEASKFVSKHGTTYYKQLLDKNKMYIQEPATIEKCNELSKQLLYTRLASIPGRSESFWKEVNHVKGLWKNRADLKVEDAGIAALFGLECFAWYCAGEIVGRGFTFTGYY 121
BLAST of eg_v1.0.alternate_g1231.t1 vs. Araport11
Match: AT4G29480.1 (| Mitochondrial ATP synthase subunit G protein | Chr4:14486265-14487257 REVERSE LENGTH=122 | 201606) HSP 1 Score: 213.772 bits (543), Expect = 4.246e-73 Identity = 100/121 (82.64%), Postives = 109/121 (90.08%), Query Frame = 0 Query: 1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFWKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYY 121
MASKL Q+QSKAC+ASKFV++HGT+YY+QLLE+NKQYIQEP TVEKC LSKQL YTRLASIP R E FWKE+DY KNLWKNR LKVEDAGIAALFGLECFAW+CAGEI GRGFTFTGYY
Sbjct: 1 MASKLIQVQSKACEASKFVAKHGTSYYRQLLEKNKQYIQEPATVEKCQELSKQLLYTRLASIPGRYETFWKEVDYAKNLWKNRSGLKVEDAGIAALFGLECFAWYCAGEIAGRGFTFTGYY 121
BLAST of eg_v1.0.alternate_g1231.t1 vs. Araport11
Match: AT2G19680.2 (| Mitochondrial ATP synthase subunit G protein | Chr2:8501865-8502622 FORWARD LENGTH=122 | 201606) HSP 1 Score: 213.001 bits (541), Expect = 8.571e-73 Identity = 102/121 (84.30%), Postives = 109/121 (90.08%), Query Frame = 0 Query: 1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFWKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYY 121
MASKL QLQSKACQASKFV++HG +YYKQLLEQNKQYIQEP T+EKC+ LSKQL YTRLASIP R E F KE+DY KNL KNR +LKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYY
Sbjct: 1 MASKLVQLQSKACQASKFVAKHGNSYYKQLLEQNKQYIQEPATIEKCSELSKQLLYTRLASIPGRYETFRKEVDYAKNLLKNRANLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYY 121
BLAST of eg_v1.0.alternate_g1231.t1 vs. Araport11
Match: AT2G19680.1 (| Mitochondrial ATP synthase subunit G protein | Chr2:8501865-8502622 FORWARD LENGTH=122 | 201606) HSP 1 Score: 213.001 bits (541), Expect = 8.571e-73 Identity = 102/121 (84.30%), Postives = 109/121 (90.08%), Query Frame = 0 Query: 1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFWKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYY 121
MASKL QLQSKACQASKFV++HG +YYKQLLEQNKQYIQEP T+EKC+ LSKQL YTRLASIP R E F KE+DY KNL KNR +LKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYY
Sbjct: 1 MASKLVQLQSKACQASKFVAKHGNSYYKQLLEQNKQYIQEPATIEKCSELSKQLLYTRLASIPGRYETFRKEVDYAKNLLKNRANLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYY 121 The following BLAST results are available for this feature:
BLAST of eg_v1.0.alternate_g1231.t1 vs. ExPASy TrEMBL
Analysis Date: 2024-01-20 (Blastp of Citrus glauca CRC3463 v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of eg_v1.0.alternate_g1231.t1 vs. ExPASy TrEMBL
Analysis Date: 2024-01-20 (Blastp of Citrus glauca CRC3463 v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of eg_v1.0.alternate_g1231.t1 vs. Araport11
Analysis Date: 2024-01-20 (Blastp of Citrus glauca CRC3463 v1.0 proteins vs Araport11) Total hits: 5 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus glauca CRC3463 v1.0 v1.0 proteins
Date Performed: 2024-01-20 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >eg_v1.0.alternate_g1231.t1-ucr_v1 ID=eg_v1.0.alternate_g1231.t1-ucr_v1; Name=eg_v1.0.alternate_g1231.t1; organism=Citrus glauca; type=mRNA; length=369bpback to top protein sequence of eg_v1.0.alternate_g1231.t1-ucr_v1 >eg_v1.0.alternate_g1231.t1-ucr_v1 ID=eg_v1.0.alternate_g1231.t1-ucr_v1; Name=eg_v1.0.alternate_g1231.t1-ucr_v1; organism=Citrus glauca; type=polypeptide; length=122bpback to top mRNA from alignment at Alt_Scaffold_1:11502966..11505167- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2202bp; location=Sequence derived from: Alt_Scaffold_1:11502966..11505167- (Citrus glaucaback to top Coding sequence (CDS) from alignment at Alt_Scaffold_1:11502966..11505167- >eg_v1.0.alternate_g1231.t1-ucr_v1 ID=eg_v1.0.alternate_g1231.t1-ucr_v1; Name=eg_v1.0.alternate_g1231.t1; organism=Citrus glauca; type=CDS; length=369bp; location=Sequence derived from: Alt_Scaffold_1:11502966..11505167- (Citrus glaucaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|