eg_v1.0.alternate_g1238.t1 | Citrus Genome Database

Transcript Overview


Name	eg_v1.0.alternate_g1238.t1
Unique Name	eg_v1.0.alternate_g1238.t1-ucr_v1
Type	mRNA
Organism	Citrus glauca (Australian desert lime)
Sequence length	369

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus glauca CRC3463 genome v1	2023-05-24
InterProScan Analysis for Citrus glauca CRC3463 v1.0 v1.0 proteins	2024-01-20
Blastp of Citrus glauca CRC3463 v1.0 proteins vs UniProt TrEMBL	2024-01-20
Blastp of Citrus glauca CRC3463 v1.0 proteins vs UniProt Swissprot	2024-01-20
Blastp of Citrus glauca CRC3463 v1.0 proteins vs Araport11	2024-01-20

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
eglminR0002	Citrus inodora CRC3784 genome v1.0	Citrus inodora
eglminR0007	Citrus inodora CRC3784 genome v1.0	Citrus inodora
eglminR0070	Citrus inodora CRC3784 genome v1.0	Citrus inodora
eglminR0080	Citrus inodora CRC3784 genome v1.0	Citrus inodora
eglminR0085	Citrus inodora CRC3784 genome v1.0	Citrus inodora
eglminR0145	Citrus inodora CRC3784 genome v1.0	Citrus inodora
cceglL0000	Citrus clementina genome v1.0 (JGI)	Citrus clementina
caueglL0004	Citrus australis genome v1.0 (UQ)	Citrus australis
caueglL0495	Citrus australis genome v1.0 (UQ)	Citrus australis
ccreglL0000	Citrus australasica CRC3672 genome v1	Citrus australasica
cleeglL0001	Citrus limon cv. Eureka genome v1.0	Citrus limon
ccreglL0047	Citrus australasica CRC3672 genome v1	Citrus australasica
cmeglL0586	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
egleglL0012	Citrus glauca CRC3463 genome v1	Citrus glauca
egleglR0033	Citrus glauca CRC3463 genome v1	Citrus glauca
eglfhR0001	Fortunella hindsii genome v1.0	Fortunella hindsii
eglfhR0002	Fortunella hindsii genome v1.0	Fortunella hindsii
egleglR0078	Citrus glauca CRC3463 genome v1	Citrus glauca
eglfhR0085	Fortunella hindsii genome v1.0	Fortunella hindsii
cmjeglL0597	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
cmjeglL0604	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
cleeglL2278	Citrus limon cv. Eureka genome v1.0	Citrus limon
cleeglL2416	Citrus limon cv. Eureka genome v1.0	Citrus limon
ccreglL2679	Citrus australasica CRC3672 genome v1	Citrus australasica
ccreglL2725	Citrus australasica CRC3672 genome v1	Citrus australasica
eglzkR0002	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
eglzkR0029	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
dvaeglL0004	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
dvbeglL0010	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
cseglL1438	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
cseglL1439	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis

Orthologs


Gene/Transcript	Assembly	Species
Cau_v1.alternate_g907.t1	Citrus australasica CRC3672 genome v1	Citrus australasica
sjg166700.1	Fortunella hindsii genome v1.0	Fortunella hindsii
mi_v1.0.primary_g1010.t1	Citrus inodora CRC3784 genome v1.0	Citrus inodora
mi_v1.0.alternate_g996.t1	Citrus inodora CRC3784 genome v1.0	Citrus inodora
Cau_v1.primary_g880.t1	Citrus australasica CRC3672 genome v1	Citrus australasica
sjg319950.1	Fortunella hindsii genome v1.0	Fortunella hindsii

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
eg_v1.0.alternate_g1231.t1	Citrus glauca CRC3463 genome v1	Citrus glauca

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
eg_v1.0.alternate_g1238	eg_v1.0.alternate_g1238-ucr_v1	Citrus glauca	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
eg_v1.0.alternate_g1238.t1.exon1	eg_v1.0.alternate_g1238.t1.exon.1-ucr_v1	Citrus glauca	exon
eg_v1.0.alternate_g1238.t1.exon2	eg_v1.0.alternate_g1238.t1.exon.2-ucr_v1	Citrus glauca	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
cds.eg_v1.0.alternate_g1238.t1	eg_v1.0.alternate_g1238.t1.cds.1-ucr_v1	Citrus glauca	CDS
cds.eg_v1.0.alternate_g1238.t1	eg_v1.0.alternate_g1238.t1.cds.2-ucr_v1	Citrus glauca	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
eg_v1.0.alternate_g1238.t1-ucr_v1	eg_v1.0.alternate_g1238.t1-ucr_v1	Citrus glauca	polypeptide
eg_v1.0.alternate_g1238.t1-ucr_v1	eg_v1.0.alternate_g1238.t1-ucr_v1-protein	Citrus glauca	polypeptide

Homology

[Close]

BLAST of eg_v1.0.alternate_g1238.t1 vs. ExPASy TrEMBL
Match: V4UF35|V4UF35_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009919mg PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.865e-35
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0

Query:    1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLAS 61
            MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLAS
Sbjct:    1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLAS 61

[Close]

BLAST of eg_v1.0.alternate_g1238.t1 vs. ExPASy TrEMBL
Match: A0A067EVX0|A0A067EVX0_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g033306mg PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.865e-35
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0

Query:    1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLAS 61
            MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLAS
Sbjct:    1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLAS 61

[Close]

BLAST of eg_v1.0.alternate_g1238.t1 vs. ExPASy TrEMBL
Match: V4TVS6|V4TVS6_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009919mg PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.670e-34
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0

Query:    1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLA 60
            MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLA
Sbjct:    1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLA 60

[Close]

BLAST of eg_v1.0.alternate_g1238.t1 vs. ExPASy TrEMBL
Match: A0A2H5PDJ8|A0A2H5PDJ8_CITUN (Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_126710 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.071e-34
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0

Query:    1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLAS 61
            MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLAS
Sbjct:    1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLAS 61

[Close]

BLAST of eg_v1.0.alternate_g1238.t1 vs. ExPASy TrEMBL
Match: A0A6A6LU67|A0A6A6LU67_HEVBR (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_026571 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.275e-34
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0

Query:    1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLAS 61
            MASKLQQLQSKACQASKF+S+HGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLAS
Sbjct:    1 MASKLQQLQSKACQASKFLSKHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLAS 61

[Close]

BLAST of eg_v1.0.alternate_g1238.t1 vs. ExPASy TrEMBL
Match: A0A1R3HAD8|A0A1R3HAD8_COCAP (Mitochondrial ATP synthase subunit G protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_20598 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.433e-33
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 0

Query:    1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLAS 61
            MASKLQQLQSKACQASKFVS+HGTAYYKQLLEQNKQYIQEPPTVEKCN LSKQLFYTRLAS
Sbjct:    1 MASKLQQLQSKACQASKFVSKHGTAYYKQLLEQNKQYIQEPPTVEKCNELSKQLFYTRLAS 61

[Close]

BLAST of eg_v1.0.alternate_g1238.t1 vs. ExPASy TrEMBL
Match: A0A6A6K8J3|A0A6A6K8J3_HEVBR (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_038896 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.710e-33
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0

Query:    1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLAS 61
            MASKLQQLQSKAC+ASKFVS+HGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLAS
Sbjct:    1 MASKLQQLQSKACEASKFVSKHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLAS 61

[Close]

BLAST of eg_v1.0.alternate_g1238.t1 vs. ExPASy TrEMBL
Match: A0A2C9W6L0|A0A2C9W6L0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G030700 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.619e-32
Identity = 58/61 (95.08%), Postives = 59/61 (96.72%), Query Frame = 0

Query:    1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLAS 61
            MASKLQQLQSKACQASKFV +HGTAYYKQLLEQNKQYIQEPPTVEKC LLSKQLFYTRLAS
Sbjct:    1 MASKLQQLQSKACQASKFVCKHGTAYYKQLLEQNKQYIQEPPTVEKCTLLSKQLFYTRLAS 61

[Close]

BLAST of eg_v1.0.alternate_g1238.t1 vs. ExPASy TrEMBL
Match: A0A1S2YE81|A0A1S2YE81_CICAR (uncharacterized protein LOC101497763 OS=Cicer arietinum OX=3827 GN=LOC101497763 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.950e-32
Identity = 55/61 (90.16%), Postives = 61/61 (100.00%), Query Frame = 0

Query:    1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLAS 61
            MASKLQQLQSKACQASKF+++HGTAY+KQLLEQNKQYIQ+PPT+EKCNLLSKQLFYTRLAS
Sbjct:    1 MASKLQQLQSKACQASKFIAKHGTAYHKQLLEQNKQYIQDPPTIEKCNLLSKQLFYTRLAS 61

[Close]

BLAST of eg_v1.0.alternate_g1238.t1 vs. ExPASy TrEMBL
Match: A0A6M2EST4|A0A6M2EST4_9ROSI (Uncharacterized protein OS=Populus davidiana OX=266767 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.893e-32
Identity = 56/61 (91.80%), Postives = 60/61 (98.36%), Query Frame = 0

Query:    1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLAS 61
            MASKL QLQSKACQASKFVS+HG+AYYKQLLEQNKQYIQ+PP+VEKCNLLSKQLFYTRLAS
Sbjct:    1 MASKLTQLQSKACQASKFVSKHGSAYYKQLLEQNKQYIQDPPSVEKCNLLSKQLFYTRLAS 61

[Close]

BLAST of eg_v1.0.alternate_g1238.t1 vs. Araport11
Match: AT2G19680.2 (| Mitochondrial ATP synthase subunit G protein | Chr2:8501865-8502622 FORWARD LENGTH=122 | 201606)

HSP 1 Score: 103.99 bits (258), Expect = 8.616e-31
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 0

Query:    1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLAS 61
            MASKL QLQSKACQASKFV++HG +YYKQLLEQNKQYIQEP T+EKC+ LSKQL YTRLAS
Sbjct:    1 MASKLVQLQSKACQASKFVAKHGNSYYKQLLEQNKQYIQEPATIEKCSELSKQLLYTRLAS 61

[Close]

BLAST of eg_v1.0.alternate_g1238.t1 vs. Araport11
Match: AT2G19680.1 (| Mitochondrial ATP synthase subunit G protein | Chr2:8501865-8502622 FORWARD LENGTH=122 | 201606)

HSP 1 Score: 103.99 bits (258), Expect = 8.616e-31
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 0

Query:    1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLAS 61
            MASKL QLQSKACQASKFV++HG +YYKQLLEQNKQYIQEP T+EKC+ LSKQL YTRLAS
Sbjct:    1 MASKLVQLQSKACQASKFVAKHGNSYYKQLLEQNKQYIQEPATIEKCSELSKQLLYTRLAS 61

[Close]

BLAST of eg_v1.0.alternate_g1238.t1 vs. Araport11
Match: AT4G26210.2 (| Mitochondrial ATP synthase subunit G protein | Chr4:13282370-13283118 FORWARD LENGTH=122 | 201606)

HSP 1 Score: 103.219 bits (256), Expect = 2.233e-30
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0

Query:    1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLAS 61
            MASKL QL+SKAC+ASKFVS+HGT YYKQLL++NK YIQEP T+EKCN LSKQL YTRLAS
Sbjct:    1 MASKLLQLKSKACEASKFVSKHGTTYYKQLLDKNKMYIQEPATIEKCNELSKQLLYTRLAS 61

[Close]

BLAST of eg_v1.0.alternate_g1238.t1 vs. Araport11
Match: AT4G26210.1 (| Mitochondrial ATP synthase subunit G protein | Chr4:13282370-13283118 FORWARD LENGTH=122 | 201606)

HSP 1 Score: 103.219 bits (256), Expect = 2.233e-30
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0

Query:    1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLAS 61
            MASKL QL+SKAC+ASKFVS+HGT YYKQLL++NK YIQEP T+EKCN LSKQL YTRLAS
Sbjct:    1 MASKLLQLKSKACEASKFVSKHGTTYYKQLLDKNKMYIQEPATIEKCNELSKQLLYTRLAS 61

[Close]

BLAST of eg_v1.0.alternate_g1238.t1 vs. Araport11
Match: AT4G29480.1 (| Mitochondrial ATP synthase subunit G protein | Chr4:14486265-14487257 REVERSE LENGTH=122 | 201606)

HSP 1 Score: 101.679 bits (252), Expect = 6.596e-30
Identity = 49/61 (80.33%), Postives = 56/61 (91.80%), Query Frame = 0

Query:    1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLAS 61
            MASKL Q+QSKAC+ASKFV++HGT+YY+QLLE+NKQYIQEP TVEKC  LSKQL YTRLAS
Sbjct:    1 MASKLIQVQSKACEASKFVAKHGTSYYRQLLEKNKQYIQEPATVEKCQELSKQLLYTRLAS 61

The following BLAST results are available for this feature:

BLAST of eg_v1.0.alternate_g1238.t1 vs. ExPASy TrEMBL
BLAST of eg_v1.0.alternate_g1238.t1 vs. ExPASy TrEMBL
BLAST of eg_v1.0.alternate_g1238.t1 vs. Araport11

BLAST of eg_v1.0.alternate_g1238.t1 vs. ExPASy TrEMBL
Analysis Date: 2024-01-20 (Blastp of Citrus glauca CRC3463 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10

Position :

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x 1


Match Name	E-value	Identity	Description
V4UF35\|V4UF35_CITCL	4.865e-35	100.00	Uncharacterized protein OS=Citrus clementina OX=85...	[more]
A0A067EVX0\|A0A067EVX0_CITSI	4.865e-35	100.00	Uncharacterized protein OS=Citrus sinensis OX=2711...	[more]
V4TVS6\|V4TVS6_CITCL	1.670e-34	100.00	Uncharacterized protein OS=Citrus clementina OX=85...	[more]
A0A2H5PDJ8\|A0A2H5PDJ8_CITUN	3.071e-34	100.00	Uncharacterized protein (Fragment) OS=Citrus unshi...	[more]
A0A6A6LU67\|A0A6A6LU67_HEVBR	9.275e-34	96.72	Uncharacterized protein OS=Hevea brasiliensis OX=3...	[more]
A0A1R3HAD8\|A0A1R3HAD8_COCAP	2.433e-33	96.72	Mitochondrial ATP synthase subunit G protein OS=Co...	[more]
A0A6A6K8J3\|A0A6A6K8J3_HEVBR	3.710e-33	96.72	Uncharacterized protein OS=Hevea brasiliensis OX=3...	[more]
A0A2C9W6L0\|A0A2C9W6L0_MANES	1.619e-32	95.08	Uncharacterized protein OS=Manihot esculenta OX=39...	[more]
A0A1S2YE81\|A0A1S2YE81_CICAR	1.950e-32	90.16	uncharacterized protein LOC101497763 OS=Cicer arie...	[more]
A0A6M2EST4\|A0A6M2EST4_9ROSI	2.893e-32	91.80	Uncharacterized protein OS=Populus davidiana OX=26...	[more]

BLAST of eg_v1.0.alternate_g1238.t1 vs. ExPASy TrEMBL
Analysis Date: 2024-01-20 (Blastp of Citrus glauca CRC3463 v1.0 proteins vs UniProt Swissprot)
Total hits: 0

Position :

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x 1


Match Name	E-value	Identity	Description

BLAST of eg_v1.0.alternate_g1238.t1 vs. Araport11
Analysis Date: 2024-01-20 (Blastp of Citrus glauca CRC3463 v1.0 proteins vs Araport11)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT2G19680.2	8.616e-31	83.61	\| Mitochondrial ATP synthase subunit G protein \| C...	[more]
AT2G19680.1	8.616e-31	83.61	\| Mitochondrial ATP synthase subunit G protein \| C...	[more]
AT4G26210.2	2.233e-30	80.33	\| Mitochondrial ATP synthase subunit G protein \| C...	[more]
AT4G26210.1	2.233e-30	80.33	\| Mitochondrial ATP synthase subunit G protein \| C...	[more]
AT4G29480.1	6.596e-30	80.33	\| Mitochondrial ATP synthase subunit G protein \| C...	[more]

InterPro

Analysis Name: InterProScan Analysis for Citrus glauca CRC3463 v1.0 v1.0 proteins
Date Performed: 2024-01-20

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006808	ATP synthase, F0 complex, subunit G, mitochondrial	PFAM	PF04718	ATP-synt_G	coord: 15..60 e-value: 1.9E-7 score: 31.8
IPR006808	ATP synthase, F0 complex, subunit G, mitochondrial	PANTHER	PTHR12386	ATP SYNTHASE SUBUNIT	coord: 1..61

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Alt_Scaffold_1:11765258..11767457+
coding sequence from alignment at Alt_Scaffold_1:11765258..11767457+

mRNA sequence

>eg_v1.0.alternate_g1238.t1-ucr_v1 ID=eg_v1.0.alternate_g1238.t1-ucr_v1; Name=eg_v1.0.alternate_g1238.t1; organism=Citrus glauca; type=mRNA; length=369bp
ATGGCGTCAAAGTTACAGCAGTTGCAATCCAAGGCATGCCAGGCGTCAAA
GTTTGTATCGCAGCATGGAACTGCCTACTACAAGCAGTTGTTGGAGCAGA
ACAAGCAATACATTCAGGAGCCACCCACTGTGGAGAAATGCAACTTGTTG
TCGAAACAATTGTTTTACACTCGTCTTGCTAGTATTCCCACAAGGCGTGA
GGCATTCTGGAAGGAACTCGACTATGTCAAGAATTTATGGAAGAACAGGC
AAGATCTGAAGGTTGAGGATGCTGGCATTGCTGCATTGTTTGGTCTTGAG
TGCTTTGCCTGGTTTTGTGCTGGTGAGATTGTGGGAAGGGGATTCACGTT
CACTGGGTACTATGTCTGA

protein sequence of eg_v1.0.alternate_g1238.t1-ucr_v1

>eg_v1.0.alternate_g1238.t1-ucr_v1 ID=eg_v1.0.alternate_g1238.t1-ucr_v1; Name=eg_v1.0.alternate_g1238.t1-ucr_v1; organism=Citrus glauca; type=polypeptide; length=61bp
MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLL
SKQLFYTRLAS

mRNA from alignment at Alt_Scaffold_1:11765258..11767457+

Legend: mRNAexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=2200bp; location=Sequence derived from: Alt_Scaffold_1:11765258..11767457+ (Citrus glauca
ATGGCGTCAAAGTTACAGCAGTTGCAATCCAAGGCATGCCAGGCGTCAAA
GTTTGTATCGCAGCATGGAACTGCCTACTACAAGCAGTTGTTGGAGCAGA
ACAAGCAATACATTCAGGAGCCACCCACTGTGGAGAAATGCAACTTGTTG
TCGAAACAATTGTTTTACACTCGTCTTGCTAGGTTATTTTCTTTAACCTT
TTCTTATCTTTATATTTCACTTCCGTTTTTATTTCGGTTTGGCAGGAGTT
CTAATGATCATTAAATGGATATGAATGTCTTGACACCATGCTGCTTAGTA
TAAGCGCTTCTGAATTTCTAAAGTCAAAGTATCGACTCTGTTTAATATCT
CTAGTGAAATGTGCCGTGTTTTGTTGAAACTACTTTACTTAATTCATTAG
TAATGTATGTTTGTTATAGGTACAATTCCTAATTGATTTATACTTATCAT
AGGTGCTTTTAAACCTTTAGTTTCTTATAAAATTTGTTCAAGATATATGT
GCATTATTTTGCTCGACTTTTTCCACTCAATCCTTTGCTTATGACTTGCT
ATTGTGGCAACCCATGCATATCATAAATTTGGGTTGCTGTGACATCCTCA
CTATACATTGTTTATCCCCTTTTAAATCCTTGGTTTTTGGCATTTGATTG
TGTTACTGTTTTTACAACATATAAACTCCTACTACTGTTGTTTCTTTCTT
TAAGCACATGTTTGTTTGAGACATGTACATGAAATTATTTTGTCACAAGG
GCTGTTTGGATTTTTTTTTTTTCATTTTTCTTCAAGGTTGTGCTTGGTTC
TTTTTTCTTTTATTTCATTTTGCCTTTTTATTTGTTGTAGAAGTAATTCT
TTATTGCCTAAAACTTGATATGTAAAATCACTAAGTTCTTTTTCCTCTCT
TTTCATTTTCTTTTTTAAATTTTATGGAGTTAGCCACATCTTGCCTAAAG
TAAAGATGTCTTTGGTTTTCCTCATCTGCAGCATGATAAGTGTCTATCAA
AAACTTTCAAACAATGACAATTTTGAATTATTTGCTCTATGAGATGCTGA
ATCTTAATGATTTTAGTTTCTCTTTTGAGTTCTTATATTTATGAATCAGA
GGGAAAACCTAGGAGCACTAGCTACATAAAAGGAGTTATGATAGTTAACG
TGAGACCTAGCTTAACCAGCATTCATGCGGAATCTTGATTGTGATATCTC
TCCATCTATTAGAATAATTGGTAAACTACAATTATATGAAAATATATGAT
GGTTTAGAAAAGCCATGGAAAAAATATTTTCAGTGCCTGGGTATCATCCA
TTTTGAATTTTAAGATCTAATGCTTTGTGCGCTTTGTTTCTTAGTCCCCA
AGAGAATTCTTATCAATAAAACAGCTCCATCAACATCAAGATATAAAGGT
TGGGAAGGAGGGAGATTTATGATTTCTGAGGCTAGGATGATGGTTAATTT
GTGTTAATGTGGTTGAAATTGCTATATTTGTACCTTGTTAAACTTAAAGG
CATTCCATTGTCTGTAATTCCAGGTAGGATAAGCTGATGTATCTAATGGT
TCATTATTTTAACTGGCTAGTCTTAGTTCTGTTCTGGAGTCCCTCCCAAA
ATTGCACTTGCAGAAGGATGGTGAAAGACTCATGAAGTAATACATTTTAG
CTGATCAACTTTGGGGAAGCAAAATGAAGTAAAACATGCTTCCTATCAAA
TCCCTAACACACATGTTAAAACCAGAACAATAAGTTGCTTTTGTTTGTCT
TTTATAAGAACTGAATGATGTGAAGCATGTGAATGTGTTTGTACATATGG
CATCTTTTTGCTCTTCCTGTTGACTATTATGACAATGTTCCTGAAGAAAT
TTTTCACTCTGCTTATTAATATTTTCAATACTTCATAAGGCACTCATTTA
GGTGACAGTTGGCGTCCCAAGCACATATCTTGCTGATCCAATAGGCTGTA
ACTATGTATATGACTGCCTTTGGTTATGCATTTATGTGCCACCTAACTTC
TTTATTGCTTCAGTATTCCCACAAGGCGTGAGGCATTCTGGAAGGAACTC
GACTATGTCAAGAATTTATGGAAGAACAGGCAAGATCTGAAGGTTGAGGA
TGCTGGCATTGCTGCATTGTTTGGTCTTGAGTGCTTTGCCTGGTTTTGTG
CTGGTGAGATTGTGGGAAGGGGATTCACGTTCACTGGGTACTATGTCTGA

Coding sequence (CDS) from alignment at Alt_Scaffold_1:11765258..11767457+

>eg_v1.0.alternate_g1238.t1-ucr_v1 ID=eg_v1.0.alternate_g1238.t1-ucr_v1; Name=eg_v1.0.alternate_g1238.t1; organism=Citrus glauca; type=CDS; length=185bp; location=Sequence derived from: Alt_Scaffold_1:11765258..11767457+ (Citrus glauca
ATGGCGTCAAAGTTACAGCAGTTGCAATCCAAGGCATGCCAGGCGTCAAA
GTTTGTATCGCAGCATGGAACTGCCTACTACAAGCAGTTGTTGGAGCAGA
ACAAGCAATACATTCAGGAGCCACCCACTGTGGAGAAATGCAACTTGTTG
TCGAAACAATTGTTTTACACTCGTCTTGCTAGTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR006808	ATP_synth_F0_gsu_mt

Vocabulary: **Molecular Function**
Term	Definition
GO:0015078	proton transmembrane transporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0015986	proton motive force-driven ATP synthesis

Vocabulary: **Cellular Component**
Term	Definition
GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)