eg_v1.0.primary_g1233.t1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of eg_v1.0.primary_g1233.t1 vs. ExPASy TrEMBL
Match: A0A2H5QWJ5|A0A2H5QWJ5_CITUN (CCHC-type domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_268340 PE=4 SV=1) HSP 1 Score: 266.929 bits (681), Expect = 6.972e-84 Identity = 117/209 (55.98%), Postives = 161/209 (77.03%), Query Frame = 0 Query: 6 KLEKKDPPPLEDDRSTKKAKFKVEGDDEDNPPMLSFKDKLMETHDSMEEDLMGKEDDLVFDLEDVVIETEGHLPSILFSQKVHAQFVKPWRTSVVIKLLRRTIGYKVLCNHLESLWSGSQGFTVIDLENDFFLVKFKTEDDAQYALTQGPWSILGHCLTVQQWSPRFDCSTETIDLVVAWIRLLGMRLHYYHKRILRMLRQVIGKVIKL 214 EK +PPPL+DDRSTKKA+F +G D DNP LSFKDKLME+ ++ ED + ++ L F+ ED+++E ++PSI FS K+HAQ V+PW+ +VV+KLL ++IGY+ LCN L +LW+ + GF VIDLEN++FL++FK+ +D ++ LTQGPW+++GH L VQ WSP+FD S E D V+ WIRL GM LHYYHKRILRM+ QVIG V+++ Sbjct: 4 NFEKAEPPPLKDDRSTKKARFHSQGADGDNPVTLSFKDKLMESQRTVVEDAINEDGALDFEPEDIMVEHGINMPSISFSPKIHAQLVRPWQYAVVVKLLGKSIGYRALCNRLGALWNSTTGFNVIDLENNYFLIRFKSNEDMEFVLTQGPWTLMGHYLIVQPWSPQFDSSKEECDSVIVWIRLPGMALHYYHKRILRMIGQVIGNVVRV 212
BLAST of eg_v1.0.primary_g1233.t1 vs. ExPASy TrEMBL
Match: A0A2H5PEG5|A0A2H5PEG5_CITUN (CCHC-type domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_128990 PE=4 SV=1) HSP 1 Score: 244.973 bits (624), Expect = 3.304e-77 Identity = 115/216 (53.24%), Postives = 155/216 (71.76%), Query Frame = 0 Query: 5 SKLEKKDPPPLEDDRSTKKAKFKVEGDDEDNPPMLSFKDKLMETH------DSMEEDLMGKEDDLVFDLEDVVIETEGHLPSILFSQKVHAQFVKPWRTSVVIKLLRRTIGYKVLCNHLESLWSGSQGFTVIDLENDFFLVKFKTEDDAQYALTQGPWSILGHCLTVQQWSPRFDCSTETIDLVVAWIRLLGMRLHYYHKRILRMLRQVIGKVIKL 214 + L+K PPPLEDDRSTKK KF+ +G+D D+PP +F+DKLME+ S D +G +D + + +DV+IE +G +PSI FS KVH Q +KPW+T+VV+KLL R IGYK L + LE+LW GF+VIDL+N ++LV+F++++ A++ LTQGPW ILGH LTVQQW+P FDC WIRL GM LHYYHK+I+R+L + GKVIK+ Sbjct: 5 NSLDKPSPPPLEDDRSTKKTKFRQQGEDGDSPPAFTFRDKLMESQYGAGDETSGRSDFVGMDDFIEIEKDDVLIERDGAIPSIAFSPKVHEQLIKPWQTTVVVKLLGRMIGYKALVSRLETLWPNIGGFSVIDLDNGYYLVRFRSDNAAEFVLTQGPWVILGHYLTVQQWTPHFDC----------WIRLPGMPLHYYHKKIIRLLGHISGKVIKI 210
BLAST of eg_v1.0.primary_g1233.t1 vs. ExPASy TrEMBL
Match: A0A067E5T2|A0A067E5T2_CITSI (CCHC-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g041945mg PE=4 SV=1) HSP 1 Score: 244.973 bits (624), Expect = 3.304e-77 Identity = 115/216 (53.24%), Postives = 155/216 (71.76%), Query Frame = 0 Query: 5 SKLEKKDPPPLEDDRSTKKAKFKVEGDDEDNPPMLSFKDKLMETH------DSMEEDLMGKEDDLVFDLEDVVIETEGHLPSILFSQKVHAQFVKPWRTSVVIKLLRRTIGYKVLCNHLESLWSGSQGFTVIDLENDFFLVKFKTEDDAQYALTQGPWSILGHCLTVQQWSPRFDCSTETIDLVVAWIRLLGMRLHYYHKRILRMLRQVIGKVIKL 214 + L+K PPPLEDDRSTKK KF+ +G+D D+PP +F+DKLME+ S D +G +D + + +DV+IE +G +PSI FS KVH Q +KPW+T+VV+KLL R IGYK L + LE+LW GF+VIDL+N ++LV+F++++ A++ LTQGPW ILGH LTVQQW+P FDC WIRL GM LHYYHK+I+R+L + GKVIK+ Sbjct: 5 NSLDKPSPPPLEDDRSTKKTKFRQQGEDGDSPPAFTFRDKLMESQYGAGDETSGRSDFVGMDDFIEIEKDDVLIERDGAIPSIAFSPKVHEQLIKPWQTTVVVKLLGRMIGYKALVSRLETLWPNIGGFSVIDLDNGYYLVRFRSDNAAEFVLTQGPWVILGHYLTVQQWTPHFDC----------WIRLPGMPLHYYHKKIIRLLGHISGKVIKI 210
BLAST of eg_v1.0.primary_g1233.t1 vs. ExPASy TrEMBL
Match: V4UR97|V4UR97_CITCL (CCHC-type domain-containing protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10013460mg PE=4 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 1.892e-70 Identity = 114/210 (54.29%), Postives = 142/210 (67.62%), Query Frame = 0 Query: 5 SKLEKKDPPPLEDDRSTKKAKFKVEGDDEDNPPMLSFKDKLMETHDSMEEDLMGKEDDLVFDLEDVVIETEGHLPSILFSQKVHAQFVKPWRTSVVIKLLRRTIGYKVLCNHLESLWSGSQGFTVIDLENDFFLVKFKTEDDAQYALTQGPWSILGHCLTVQQWSPRFDCSTETIDLVVAWIRLLGMRLHYYHKRILRMLRQVIGKVIKL 214 + L+K PPPLEDDRSTKK KF+ +G+D DNP MLSF+DKLME + + +++DVVIE EG LPSI FS+KVH Q +KPW+++VV+KLL R IGYK LC+ LE LW S ++VIDL+N +FLVKF+ EDDA Y WSP FD S E ID + AWIRL GM LHYY+K+I+RML VIGKVIK+ Sbjct: 6 NSLDKNSPPPLEDDRSTKKTKFRAQGEDGDNPSMLSFRDKLMEQQRGV----------IDAEVDDVVIEREGFLPSISFSRKVHEQLIKPWQSTVVVKLLGRMIGYKALCSQLEILWPNSGRYSVIDLDNGYFLVKFRKEDDADYL-----------------WSPHFDSSNEKIDKITAWIRLPGMPLHYYYKKIIRMLGHVIGKVIKI 188
BLAST of eg_v1.0.primary_g1233.t1 vs. ExPASy TrEMBL
Match: A0A067DI07|A0A067DI07_CITSI (CCHC-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g041269mg PE=4 SV=1) HSP 1 Score: 234.187 bits (596), Expect = 4.179e-70 Identity = 103/207 (49.76%), Postives = 141/207 (68.12%), Query Frame = 0 Query: 8 EKKDPPPLEDDRSTKKAKFKVEGDDEDNPPMLSFKDKLMETHDSMEEDLMGKEDDLVFDLEDVVIETEGHLPSILFSQKVHAQFVKPWRTSVVIKLLRRTIGYKVLCNHLESLWSGSQGFTVIDLENDFFLVKFKTEDDAQYALTQGPWSILGHCLTVQQWSPRFDCSTETIDLVVAWIRLLGMRLHYYHKRILRMLRQVIGKVIKL 214 EK PPPL +DR TKK KF+ EG D DNP LS++D ME + + G D+ V + EDV + + +P I FSQ+VH + KPW SVV+K L R +GY+V+ L+ LW GF++IDL ND++LV+F+ E D +YALT+GPW+I+GH L VQQW+P FD +T +D +VAWIRL M +H+YHK I+R L Q++G VIK+ Sbjct: 4 EKVSPPPLANDRFTKKTKFRAEGADGDNPTPLSYRDIAMEANGGSANVVFGMSDEWVLEEEDVCCKEDDSMPYIAFSQRVHDRLAKPWANSVVVKTLGRNLGYRVISERLKKLWGSKMGFSIIDLANDYYLVRFQNEGDVEYALTEGPWTIMGHYLFVQQWTPDFDATTNKVDRIVAWIRLSSMNIHFYHKTIIRRLGQIVGPVIKI 210
BLAST of eg_v1.0.primary_g1233.t1 vs. ExPASy TrEMBL
Match: A0A067DH06|A0A067DH06_CITSI (CCHC-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g044376mg PE=4 SV=1) HSP 1 Score: 233.417 bits (594), Expect = 7.426e-70 Identity = 103/206 (50.00%), Postives = 140/206 (67.96%), Query Frame = 0 Query: 9 KKDPPPLEDDRSTKKAKFKVEGDDEDNPPMLSFKDKLMETHDSMEEDLMGKEDDLVFDLEDVVIETEGHLPSILFSQKVHAQFVKPWRTSVVIKLLRRTIGYKVLCNHLESLWSGSQGFTVIDLENDFFLVKFKTEDDAQYALTQGPWSILGHCLTVQQWSPRFDCSTETIDLVVAWIRLLGMRLHYYHKRILRMLRQVIGKVIKL 214 K PPPL DR TKK KF+ EG D DNP LS++D ME + G D+ + EDV + + +P I FSQ+VH + KPW SVV+K L R +GY+V+ L+ LWS + GF++IDL ND++LV+F+ E D +YALT+GPW+I+GH L VQQW+P FD +T +D +VAWIRL GM +H+YHK I+R L Q++G VIK+ Sbjct: 5 KASPPPLASDRFTKKTKFRAEGADGDNPKPLSYRDIAMEANGGSANMGFGMRDEWELEEEDVCCKEDESMPYIAFSQRVHDRLAKPWANSVVVKTLGRNLGYRVISERLKRLWSSTMGFSIIDLANDYYLVRFQNEGDVEYALTEGPWTIMGHYLFVQQWTPEFDATTNRVDRIVAWIRLSGMNIHFYHKTIIRRLGQIVGPVIKI 210
BLAST of eg_v1.0.primary_g1233.t1 vs. ExPASy TrEMBL
Match: A0A2H5QN88|A0A2H5QN88_CITUN (DUF4283 domain-containing protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_245850 PE=4 SV=1) HSP 1 Score: 214.157 bits (544), Expect = 5.594e-67 Identity = 105/189 (55.56%), Postives = 131/189 (69.31%), Query Frame = 0 Query: 7 LEKKDPPPLEDDRSTKKAKFKVEGDDEDNPPMLSFKDKLMETHDSM------EEDLMGKEDDLVFDLEDVVIETEGHLPSILFSQKVHAQFVKPWRTSVVIKLLRRTIGYKVLCNHLESLWSGSQGFTVIDLENDFFLVKFKTEDDAQYALTQGPWSILGHCLTVQQWSPRFDCSTETIDLVVAWIRLL 189 L+K PPP+EDDRSTKK KF+ +G+D DNP MLSF+DKLME + E+ MG+E+D+ + EDVVI+ EG LPSI FSQKVH Q +KPW+++VV+K L R IGYK LC+ LE LW G++VIDL+N +FLVKF+ E GPW + GH L VQ WSP FD S E ID + AWIRLL Sbjct: 8 LDKNSPPPIEDDRSTKKTKFRAQGEDIDNPSMLSFRDKLMEQQRGVIDAEVSREEFMGRENDIEIEKEDVVIDREGFLPSISFSQKVHEQLIKPWQSTVVVKFLGRMIGYKALCSLLEILWPNIGGYSVIDLDNGYFLVKFRKE---------GPWLVSGHFLIVQLWSPHFDSSNEKIDKITAWIRLL 187
BLAST of eg_v1.0.primary_g1233.t1 vs. ExPASy TrEMBL
Match: A0A067D4V7|A0A067D4V7_CITSI (CCHC-type domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g047084mg PE=4 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 6.550e-66 Identity = 110/223 (49.33%), Postives = 150/223 (67.26%), Query Frame = 0 Query: 1 MESISKLEKKDPPPLEDDRSTKKAKFKVEGDDEDNPPMLSFKDKLM--ETHDSMEEDLMGKEDDLVFDLEDVVIETEGHLPSILFSQKVHAQFVKPWRTSVVIKLLRRTIGYKVLCNHLESLWSGSQGFTVIDLENDFFLVKFKTEDDAQYALTQGPWSILGHCLTVQQWSPRFDCSTETIDLVVAWIRLLGMRLHYYHKRILRMLRQVIGKVIKLITTPSLR 221 + + L K PPPL DRSTKKA+F+ D D+P LSFKD L+ E + S E+ M +E DL + DV I +G +P+I FS+++ + +KPW+ SVV+KLL R IGYKVLCN L+ +W F+VIDLEN++FL++ K+ +DA YALT+GPW I GH LTVQ W+P+FD +T +D + WIRL GM H Y KRILR + Q++G VIK+ +LR Sbjct: 117 LRQLRNLLKTIPPPLAADRSTKKARFRSHEVDADSPSPLSFKDALVHPEQYRSSEDAEMEEEWDL--EPGDVTIGDDGTMPTIKFSKRIQDKLIKPWQNSVVVKLLGRNIGYKVLCNRLKVMWHQIHDFSVIDLENNYFLIRLKSPEDAVYALTEGPWVIFGHYLTVQPWTPQFDSTTTDLDSAIVWIRLPGMAFHLYDKRILRKIGQLVGNVIKIDYHTALR 337
BLAST of eg_v1.0.primary_g1233.t1 vs. ExPASy TrEMBL
Match: A0A067D3Y3|A0A067D3Y3_CITSI (DUF4283 domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g048335mg PE=4 SV=1) HSP 1 Score: 209.149 bits (531), Expect = 5.783e-65 Identity = 101/189 (53.44%), Postives = 130/189 (68.78%), Query Frame = 0 Query: 7 LEKKDPPPLEDDRSTKKAKFKVEGDDEDNPPMLSFKDKLMETHDSM------EEDLMGKEDDLVFDLEDVVIETEGHLPSILFSQKVHAQFVKPWRTSVVIKLLRRTIGYKVLCNHLESLWSGSQGFTVIDLENDFFLVKFKTEDDAQYALTQGPWSILGHCLTVQQWSPRFDCSTETIDLVVAWIRLL 189 L+K PPP+EDDR TKK KF+ +G+D DNP MLSF+DKLM+ + E+ MG+E+D+ + EDVVI+ EG LPSI FSQKVH Q +KPW+++VV+K L R IGYK LC+ LE LW G+++IDL+N +FLVKF+ E GPW + GH L VQ WSP FD S E ID ++AWIR L Sbjct: 8 LDKNSPPPIEDDRLTKKTKFRAQGEDIDNPSMLSFRDKLMKQQRGVIDAEVGREEFMGRENDIEIEKEDVVIDREGFLPSISFSQKVHEQLIKPWQSTVVVKFLGRMIGYKALCSLLEILWPNIGGYSIIDLDNGYFLVKFRKE---------GPWLVSGHFLIVQLWSPHFDSSNEKIDKIIAWIRFL 187
BLAST of eg_v1.0.primary_g1233.t1 vs. ExPASy TrEMBL
Match: A0A067FSH1|A0A067FSH1_CITSI (CCHC-type domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g046866mg PE=4 SV=1) HSP 1 Score: 220.32 bits (560), Expect = 8.015e-65 Identity = 98/201 (48.76%), Postives = 135/201 (67.16%), Query Frame = 0 Query: 14 PLEDDRSTKKAKFKVEGDDEDNPPMLSFKDKLMETHDSMEEDLMGKEDDLVFDLEDVVIETEGHLPSILFSQKVHAQFVKPWRTSVVIKLLRRTIGYKVLCNHLESLWSGSQGFTVIDLENDFFLVKFKTEDDAQYALTQGPWSILGHCLTVQQWSPRFDCSTETIDLVVAWIRLLGMRLHYYHKRILRMLRQVIGKVIKL 214 P DRSTKKAKFK +G D DNP LSF+D LM+ + + G++DD + +DV E +P I FS KVH + V+PW SVV+K L R +GY+VL + L +WS + GF +IDL ND+FL++F + D +YALT+GPW+++GH L+VQ+WSP FD I+ +VAWIRL M + +YHK I+R L +IG VIK+ Sbjct: 13 PPAADRSTKKAKFKAQGADGDNPSPLSFRDMLMDMQEQSDSGKFGRKDDWELEEDDVTYREEESMPFIAFSSKVHERLVEPWENSVVVKTLGRNLGYRVLSSRLNMIWSSTTGFEIIDLANDYFLIRFNNKKDVEYALTEGPWTVMGHYLSVQKWSPDFDVVNNKINHIVAWIRLSQMNIQFYHKSIIRRLGHIIGPVIKI 213
BLAST of eg_v1.0.primary_g1233.t1 vs. Araport11
Match: AT2G01050.1 (| zinc ion binding / nucleic acid binding protein | Chr2:68337-69884 REVERSE LENGTH=515 | 201606) HSP 1 Score: 94.7449 bits (234), Expect = 3.005e-22 Identity = 47/136 (34.56%), Postives = 75/136 (55.15%), Query Frame = 0 Query: 79 PSILFSQKVHAQFVKPWRTSVVIKLLRRTIGYKVLCNHLESLWSGSQGFTVIDLENDFFLVKFKTEDDAQYALTQGPWSILGHCLTVQQWSPRFDCSTETIDLVVAWIRLLGMRLHYYHKRILRMLRQVIGKVIKL 214 P I ++V W+ +++K+L I VL L LW S TV+DL FF+++F+ E++ ALT GPW +LG+ L VQ WS RFD + I W+RL + +YYH+ +L + + +G+ +K+ Sbjct: 61 PVITIGEEVLEAMNGLWKKCMIVKVLGSQIPISVLNRKLRELWKPSGVMTVMDLPRQFFMIRFELEEEYMAALTGGPWRVLGNYLLVQDWSSRFDPLRDDIVTTPVWVRLSNIPYNYYHRCLLMEIARGLGRPLKV 196 The following BLAST results are available for this feature:
BLAST of eg_v1.0.primary_g1233.t1 vs. ExPASy TrEMBL
Analysis Date: 2024-01-20 (Blastp of Citrus glauca CRC3463 v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of eg_v1.0.primary_g1233.t1 vs. ExPASy TrEMBL
Analysis Date: 2024-01-20 (Blastp of Citrus glauca CRC3463 v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of eg_v1.0.primary_g1233.t1 vs. Araport11
Analysis Date: 2024-01-20 (Blastp of Citrus glauca CRC3463 v1.0 proteins vs Araport11) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus glauca CRC3463 v1.0 v1.0 proteins
Date Performed: 2024-01-20 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >eg_v1.0.primary_g1233.t1-ucr_v1 ID=eg_v1.0.primary_g1233.t1-ucr_v1; Name=eg_v1.0.primary_g1233.t1; organism=Citrus glauca; type=mRNA; length=687bpback to top protein sequence of eg_v1.0.primary_g1233.t1-ucr_v1 >eg_v1.0.primary_g1233.t1-ucr_v1 ID=eg_v1.0.primary_g1233.t1-ucr_v1; Name=eg_v1.0.primary_g1233.t1-ucr_v1; organism=Citrus glauca; type=polypeptide; length=228bpback to top mRNA from alignment at Pri_Scaffold_1:11717190..11717876- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=687bp; location=Sequence derived from: Pri_Scaffold_1:11717190..11717876- (Citrus glaucaback to top Coding sequence (CDS) from alignment at Pri_Scaffold_1:11717190..11717876- >eg_v1.0.primary_g1233.t1-ucr_v1 ID=eg_v1.0.primary_g1233.t1-ucr_v1; Name=eg_v1.0.primary_g1233.t1; organism=Citrus glauca; type=CDS; length=687bp; location=Sequence derived from: Pri_Scaffold_1:11717190..11717876- (Citrus glaucaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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