eg_v1.0.primary_g1258.t1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of eg_v1.0.primary_g1258.t1 vs. ExPASy TrEMBL
Match: A0A067EZI5|A0A067EZI5_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g040614mg PE=4 SV=1) HSP 1 Score: 262.307 bits (669), Expect = 8.415e-84 Identity = 125/127 (98.43%), Postives = 126/127 (99.21%), Query Frame = 0 Query: 1 MEAALLAVIARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVCRSAP 127
MEAALLA+IARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIV RSAP
Sbjct: 1 MEAALLAIIARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAP 127
BLAST of eg_v1.0.primary_g1258.t1 vs. ExPASy TrEMBL
Match: A0A2H5PDM3|A0A2H5PDM3_CITUN (Uncharacterized protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_126860 PE=4 SV=1) HSP 1 Score: 262.307 bits (669), Expect = 9.158e-84 Identity = 125/127 (98.43%), Postives = 126/127 (99.21%), Query Frame = 0 Query: 1 MEAALLAVIARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVCRSAP 127
MEAALLA+IARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIV RSAP
Sbjct: 11 MEAALLAIIARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAP 137
BLAST of eg_v1.0.primary_g1258.t1 vs. ExPASy TrEMBL
Match: A0A2H5PDL4|A0A2H5PDL4_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_126860 PE=4 SV=1) HSP 1 Score: 262.692 bits (670), Expect = 1.295e-83 Identity = 125/127 (98.43%), Postives = 126/127 (99.21%), Query Frame = 0 Query: 1 MEAALLAVIARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVCRSAP 127
MEAALLA+IARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIV RSAP
Sbjct: 29 MEAALLAIIARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAP 155
BLAST of eg_v1.0.primary_g1258.t1 vs. ExPASy TrEMBL
Match: V4WDV6|V4WDV6_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10008074mg PE=4 SV=1) HSP 1 Score: 262.692 bits (670), Expect = 1.295e-83 Identity = 125/127 (98.43%), Postives = 126/127 (99.21%), Query Frame = 0 Query: 1 MEAALLAVIARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVCRSAP 127
MEAALLA+IARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIV RSAP
Sbjct: 29 MEAALLAIIARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAVPGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVYRSAP 155
BLAST of eg_v1.0.primary_g1258.t1 vs. ExPASy TrEMBL
Match: A0A1S3UZ06|A0A1S3UZ06_VIGRR (protein EFFECTOR OF TRANSCRIPTION 2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106769867 PE=4 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 1.803e-43 Identity = 76/141 (53.90%), Postives = 96/141 (68.09%), Query Frame = 0 Query: 8 VIARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAVPGAG--------------VIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGR-------YFEDIFRRGYSIVCRSAP 127
V +R++RE C RT HDS FS WK L+GPSDWE+HS GKEG RY++HNLP ++ PG+YELGIAV G ++VVY+GQA++VR RLQ YGRTGAHL SGC +G FE++F +G+SIV R AP
Sbjct: 5 VNSRLKREQCNRTKHDSSFSHWKILIGPSDWEDHSKGKEGCPRYRIHNLPEESNPGVYELGIAVSNGGLGREISKLTPHSHRILVVYLGQADNVRTRLQRYGRTGAHLQSGCSNGSSSQEGRPLFEEVFSQGFSIVYRWAP 145
BLAST of eg_v1.0.primary_g1258.t1 vs. ExPASy TrEMBL
Match: A0A4D6LSH7|A0A4D6LSH7_VIGUN (GIY-YIG nuclease superfamily OS=Vigna unguiculata OX=3917 GN=DEO72_LG5g35 PE=4 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 2.505e-43 Identity = 76/141 (53.90%), Postives = 96/141 (68.09%), Query Frame = 0 Query: 8 VIARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAVPGAG--------------VIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGR-------YFEDIFRRGYSIVCRSAP 127
V R++RE C RT HDS FS WK L+GPSDWE+HS GKEG RY++HNLP ++ PG+YELGIAV G ++VVY+GQA++VR RLQ YGRTGAHL+SGC +G FE++F +G+SIV R AP
Sbjct: 5 VNTRLKREQCNRTKHDSSFSHWKILIGPSDWEDHSKGKEGCARYRIHNLPQESNPGVYELGIAVINGGLGREISKLAPHSHRIVVVYLGQADNVRTRLQRYGRTGAHLHSGCSNGSSPQKGRPLFEEVFSQGFSIVYRWAP 145
BLAST of eg_v1.0.primary_g1258.t1 vs. ExPASy TrEMBL
Match: A0A2P5BNR7|A0A2P5BNR7_PARAD (Effector of transcription (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_222970 PE=4 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 3.234e-43 Identity = 80/146 (54.79%), Postives = 96/146 (65.75%), Query Frame = 0 Query: 7 AVIARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAVPGAG------------VIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGR-------------YFEDIFRRGYSIVCRSAP 127
V++R++REDC+RT HDS FSKW+ LVGPSDWE++S GKEGAERY+VHNLP D+GPG+YELGIAV G ++VVY+GQAE VR RLQ YGR+GAHL S +G FE I GY IV R AP
Sbjct: 8 VVVSRLKREDCQRTKHDSHFSKWEILVGPSDWEDYSLGKEGAERYRVHNLPRDSGPGVYELGIAVSRTGLGRDIGKLDPERLVVVYLGQAECVRTRLQRYGRSGAHLGSSYPTGFPADWKTALQKGPGLFEKILLSGYPIVFRWAP 153
BLAST of eg_v1.0.primary_g1258.t1 vs. ExPASy TrEMBL
Match: A0A5D2YEH6|A0A5D2YEH6_GOSMU (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A08G272800v1 PE=4 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 1.449e-42 Identity = 82/143 (57.34%), Postives = 94/143 (65.73%), Query Frame = 0 Query: 1 MEAALLA-VIARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAVPGA----------GVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRY-----FEDIFRRGYSIVCRSAP 127
M AA LA V+ R RED +RT HDSQFSKWK L+GP DWE+HS GKEG RY+V NLP GLYEL I P + V+VVY+G+A++VR+RLQ YGRTGAHL DSG FEDIF RGYSIV R AP
Sbjct: 26 MGAAKLADVVTRFNREDHKRTKHDSQFSKWKVLIGPHDWEDHSVGKEGVARYRVENLPKTASSGLYELAINKPSSRDHNGKLDSDKVLVVYLGEADNVRSRLQQYGRTGAHLGRN-DSGNNKVCGCFEDIFARGYSIVYRWAP 167
BLAST of eg_v1.0.primary_g1258.t1 vs. ExPASy TrEMBL
Match: A0A5D2YEM2|A0A5D2YEM2_GOSMU (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A08G272800v1 PE=4 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 2.961e-42 Identity = 82/143 (57.34%), Postives = 94/143 (65.73%), Query Frame = 0 Query: 1 MEAALLA-VIARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAVPGA----------GVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRY-----FEDIFRRGYSIVCRSAP 127
M AA LA V+ R RED +RT HDSQFSKWK L+GP DWE+HS GKEG RY+V NLP GLYEL I P + V+VVY+G+A++VR+RLQ YGRTGAHL DSG FEDIF RGYSIV R AP
Sbjct: 26 MGAAKLADVVTRFNREDHKRTKHDSQFSKWKVLIGPHDWEDHSVGKEGVARYRVENLPKTASSGLYELAINKPSSRDHNGKLDSDKVLVVYLGEADNVRSRLQQYGRTGAHLGRN-DSGNNKVCGCFEDIFARGYSIVYRWAP 167
BLAST of eg_v1.0.primary_g1258.t1 vs. ExPASy TrEMBL
Match: W9R5X1|W9R5X1_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_027255 PE=4 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 3.643e-42 Identity = 76/144 (52.78%), Postives = 98/144 (68.06%), Query Frame = 0 Query: 6 LAVIARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAVPGAG------------VIVVYVGQAESVRARLQAYGRTGAHLNSGC----------DSGRYFEDIFRRGYSIVCRSAP 127
+AV++R++REDC+RT HD +FSKW+ L+GPSDWE + GKEGAERY+VHNLP ++GPG+YELGIAV G ++VVY+GQA++VR RLQ YGRTGAHL + C FE+I RGY I+ R AP
Sbjct: 58 VAVMSRLKREDCKRTKHDREFSKWEILIGPSDWEEYLLGKEGAERYRVHNLPKNSGPGVYELGIAVSRTGLGREIGKLDPERIVVVYLGQADNVRTRLQHYGRTGAHLGNSCPPQCKTVIPQKGPGLFEEILSRGYPIIFRWAP 201
BLAST of eg_v1.0.primary_g1258.t1 vs. ExPASy Swiss-Prot
Match: ET2_ARATH (Protein EFFECTOR OF TRANSCRIPTION 2 OS=Arabidopsis thaliana OX=3702 GN=ET2 PE=1 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 9.075e-34 Identity = 67/138 (48.55%), Postives = 88/138 (63.77%), Query Frame = 0 Query: 13 QREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAVPGAG---------VIVVYVGQAESVRARLQAYGRTGAHLN-----SGCD---------SGRYFEDIFRRGYSIVCRSAP 127
+RED +RT HD+ FSKW+ L+G +DWE+ +GK+G RY+V NLP + PGLYELG+AV G V+ Y+GQAESVR+RLQ YGR+GAHL + C+ +G FEDIF +G SI+ R AP
Sbjct: 17 KREDYKRTKHDTVFSKWQVLIGSNDWEDFKNGKDGVGRYRVQNLPRKSCPGLYELGVAVIGQEQCRKLEPDIVLASYLGQAESVRSRLQRYGRSGAHLRNVNNLNDCETIESPVKAVTGGLFEDIFSKGGSILYRWAP 154
BLAST of eg_v1.0.primary_g1258.t1 vs. ExPASy Swiss-Prot
Match: ET3_ARATH (Protein EFFECTOR OF TRANSCRIPTION 3 OS=Arabidopsis thaliana OX=3702 GN=ET3 PE=4 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.241e-26 Identity = 57/131 (43.51%), Postives = 74/131 (56.49%), Query Frame = 0 Query: 7 AVIARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAV----------PGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVCRSAP 127
AV +RED + T HD FSKW+ L+ +DW++ ++ KE RY+ +LP GLYELG+ V P V+ VYVGQ V++RLQ YGR G HL SG +EDIF GYS+ R AP
Sbjct: 50 AVPTMFKREDYKLTIHDIAFSKWRNLIRHNDWKDFNNRKERVRRYRHEDLPPQRCTGLYELGVGVIGQDQGQNFDPDNNVLGVYVGQCVDVKSRLQDYGRRGGHLPSGL-----YEDIFSEGYSVFYRWAP 175
BLAST of eg_v1.0.primary_g1258.t1 vs. Araport11
Match: AT5G56780.1 (| effector of transcription2 | Chr5:22964384-22966241 REVERSE LENGTH=483 | 201606) HSP 1 Score: 125.561 bits (314), Expect = 9.284e-35 Identity = 67/138 (48.55%), Postives = 88/138 (63.77%), Query Frame = 0 Query: 13 QREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAVPGAG---------VIVVYVGQAESVRARLQAYGRTGAHLN-----SGCD---------SGRYFEDIFRRGYSIVCRSAP 127
+RED +RT HD+ FSKW+ L+G +DWE+ +GK+G RY+V NLP + PGLYELG+AV G V+ Y+GQAESVR+RLQ YGR+GAHL + C+ +G FEDIF +G SI+ R AP
Sbjct: 17 KREDYKRTKHDTVFSKWQVLIGSNDWEDFKNGKDGVGRYRVQNLPRKSCPGLYELGVAVIGQEQCRKLEPDIVLASYLGQAESVRSRLQRYGRSGAHLRNVNNLNDCETIESPVKAVTGGLFEDIFSKGGSILYRWAP 154
BLAST of eg_v1.0.primary_g1258.t1 vs. Araport11
Match: AT5G56770.1 (| transcription repressor-like protein | Chr5:22962994-22963989 REVERSE LENGTH=254 | 201606) HSP 1 Score: 102.449 bits (254), Expect = 1.269e-27 Identity = 57/131 (43.51%), Postives = 74/131 (56.49%), Query Frame = 0 Query: 7 AVIARIQREDCERTNHDSQFSKWKELVGPSDWENHSHGKEGAERYKVHNLPNDTGPGLYELGIAV----------PGAGVIVVYVGQAESVRARLQAYGRTGAHLNSGCDSGRYFEDIFRRGYSIVCRSAP 127
AV +RED + T HD FSKW+ L+ +DW++ ++ KE RY+ +LP GLYELG+ V P V+ VYVGQ V++RLQ YGR G HL SG +EDIF GYS+ R AP
Sbjct: 50 AVPTMFKREDYKLTIHDIAFSKWRNLIRHNDWKDFNNRKERVRRYRHEDLPPQRCTGLYELGVGVIGQDQGQNFDPDNNVLGVYVGQCVDVKSRLQDYGRRGGHLPSGL-----YEDIFSEGYSVFYRWAP 175 The following BLAST results are available for this feature:
BLAST of eg_v1.0.primary_g1258.t1 vs. ExPASy TrEMBL
Analysis Date: 2024-01-20 (Blastp of Citrus glauca CRC3463 v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of eg_v1.0.primary_g1258.t1 vs. ExPASy Swiss-Prot
Analysis Date: 2024-01-20 (Blastp of Citrus glauca CRC3463 v1.0 proteins vs UniProt Swissprot) Total hits: 2 Position : 0 Zoom : x 1
BLAST of eg_v1.0.primary_g1258.t1 vs. Araport11
Analysis Date: 2024-01-20 (Blastp of Citrus glauca CRC3463 v1.0 proteins vs Araport11) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus glauca CRC3463 v1.0 v1.0 proteins
Date Performed: 2024-01-20 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >eg_v1.0.primary_g1258.t1-ucr_v1 ID=eg_v1.0.primary_g1258.t1-ucr_v1; Name=eg_v1.0.primary_g1258.t1; organism=Citrus glauca; type=mRNA; length=1428bpback to top protein sequence of eg_v1.0.primary_g1258.t1-ucr_v1 >eg_v1.0.primary_g1258.t1-ucr_v1 ID=eg_v1.0.primary_g1258.t1-ucr_v1; Name=eg_v1.0.primary_g1258.t1-ucr_v1; organism=Citrus glauca; type=polypeptide; length=127bpback to top mRNA from alignment at Pri_Scaffold_1:12218098..12220138- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2041bp; location=Sequence derived from: Pri_Scaffold_1:12218098..12220138- (Citrus glaucaback to top Coding sequence (CDS) from alignment at Pri_Scaffold_1:12218098..12220138- >eg_v1.0.primary_g1258.t1-ucr_v1 ID=eg_v1.0.primary_g1258.t1-ucr_v1; Name=eg_v1.0.primary_g1258.t1; organism=Citrus glauca; type=CDS; length=384bp; location=Sequence derived from: Pri_Scaffold_1:12218098..12220138- (Citrus glaucaback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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