eg_v1.0.primary_g6492.t1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of eg_v1.0.primary_g6492.t1 vs. ExPASy TrEMBL
Match: V4TKG8|V4TKG8_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016829mg PE=4 SV=1) HSP 1 Score: 277.33 bits (708), Expect = 1.797e-92 Identity = 180/191 (94.24%), Postives = 183/191 (95.81%), Query Frame = 0 Query: 1 MATVEVVSAKTALSEE-----PVKAEETKTTEEPVKAEETKTAEEPVKTEETKTEEVVASASAAPVAPEPVAEVPPAAKEAEAAAVTEEAAVVTPEAEAPAEVKTKEVVAEDQPAAAEKTTAEKTEEVETTPTETPEPAAEKEAKEEEKKPEAEVEAAQEEVKDEEKPAVEKPAEAEKKADTDEAPAEKTE 186 MATVEVVSAKTALSEE PVKAEETKT EEPVKAEETKTA+EPVKTEETKTEEVVASASAAPVAPEPVAE PPAAKEAEA AVTEEAAVVTPEAEAPAEV+TKEVVAEDQPAAAEKTTAEKTEEVETTPTETPEPAAEKEAKEEEKKPEAEVEAA+EEVKDEEKPAVEKPAEAEKKADTDEAPAEKTE Sbjct: 1 MATVEVVSAKTALSEEIKAEEPVKAEETKTAEEPVKAEETKTADEPVKTEETKTEEVVASASAAPVAPEPVAEEPPAAKEAEAVAVTEEAAVVTPEAEAPAEVETKEVVAEDQPAAAEKTTAEKTEEVETTPTETPEPAAEKEAKEEEKKPEAEVEAAKEEVKDEEKPAVEKPAEAEKKADTDEAPAEKTE 191
BLAST of eg_v1.0.primary_g6492.t1 vs. ExPASy TrEMBL
Match: A0A067EX44|A0A067EX44_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029569mg PE=4 SV=1) HSP 1 Score: 275.018 bits (702), Expect = 1.072e-91 Identity = 179/191 (93.72%), Postives = 182/191 (95.29%), Query Frame = 0 Query: 1 MATVEVVSAKTALSEE-----PVKAEETKTTEEPVKAEETKTAEEPVKTEETKTEEVVASASAAPVAPEPVAEVPPAAKEAEAAAVTEEAAVVTPEAEAPAEVKTKEVVAEDQPAAAEKTTAEKTEEVETTPTETPEPAAEKEAKEEEKKPEAEVEAAQEEVKDEEKPAVEKPAEAEKKADTDEAPAEKTE 186 MATVEVVSAKTALSEE PVKAEETKTTEEPVKAEETKTA+EPVKTEETKTEEVVASASAAPVAPEPVAE PPAAKEAE AVTEEAAVVTPEAEAPAEV+TKEVVAEDQPAAAEKTTAEKTEEVETTPTETPEPAAEKEAKEEEKKPEAEVEAA+EEVKDEEKPAVEKPAEAEKKADTD APAEKTE Sbjct: 1 MATVEVVSAKTALSEEIKAEEPVKAEETKTTEEPVKAEETKTADEPVKTEETKTEEVVASASAAPVAPEPVAEEPPAAKEAEPVAVTEEAAVVTPEAEAPAEVETKEVVAEDQPAAAEKTTAEKTEEVETTPTETPEPAAEKEAKEEEKKPEAEVEAAKEEVKDEEKPAVEKPAEAEKKADTDGAPAEKTE 191
BLAST of eg_v1.0.primary_g6492.t1 vs. ExPASy TrEMBL
Match: A0A067ETN8|A0A067ETN8_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029569mg PE=4 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 2.840e-42 Identity = 171/186 (91.94%), Postives = 175/186 (94.09%), Query Frame = 0 Query: 1 MATVEVVSAKTALSEEPVKAEETKTTEEPVKAEETKTAEEPVKTEETKTEEVVASASAAPVAPEPVAEVPPAAKEAEAAAVTEEAAVVTPEAEAPAEVKTKEVVAEDQPAAAEKTTAEKTEEVETTPTETPEPAAEKEAKEEEKKPEAEVEAAQEEVKDEEKPAVEKPAEAEKKADTDEAPAEKTE 186 MATVEVVSAKTALSEE +KAEE PVKAEETKTA+EPVKTEETKTEEVVASASAAPVAPEPVAE PPAAKEAE AVTEEAAVVTPEAEAPAEV+TKEVVAEDQPAAAEKTTAEKTEEVETTPTETPEPAAEKEAKEEEKKPEAEVEAA+EEVKDEEKPAVEKPAEAEKKADTD APAEKTE Sbjct: 1 MATVEVVSAKTALSEE-IKAEE------PVKAEETKTADEPVKTEETKTEEVVASASAAPVAPEPVAEEPPAAKEAEPVAVTEEAAVVTPEAEAPAEVETKEVVAEDQPAAAEKTTAEKTEEVETTPTETPEPAAEKEAKEEEKKPEAEVEAAKEEVKDEEKPAVEKPAEAEKKADTDGAPAEKTE 179
BLAST of eg_v1.0.primary_g6492.t1 vs. ExPASy TrEMBL
Match: A0A2H5PLG7|A0A2H5PLG7_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_147410 PE=4 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 4.913e-38 Identity = 173/186 (93.01%), Postives = 177/186 (95.16%), Query Frame = 0 Query: 1 MATVEVVSAKTALSEEPVKAEETKTTEEPVKAEETKTAEEPVKTEETKTEEVVASASAAPVAPEPVAEVPPAAKEAEAAAVTEEAAVVTPEAEAPAEVKTKEVVAEDQPAAAEKTTAEKTEEVETTPTETPEPAAEKEAKEEEKKPEAEVEAAQEEVKDEEKPAVEKPAEAEKKADTDEAPAEKTE 186 MATVEVVSAKTALSEE +KAEE PVKAEETKTA+EPVKTEETKTEEVVASASAAPVAPEPVAE PPAAKEAEA AVTEEAAVVTPEAEAPAEV+TKEVVAEDQPAAAEKTTAEKTEEVETTPTETPEPAAEKEAKEEEKKPEAEVEAA+EEVKDEEKPAVEKPAEAEKKADTDEAPAEKTE Sbjct: 1 MATVEVVSAKTALSEE-IKAEE------PVKAEETKTADEPVKTEETKTEEVVASASAAPVAPEPVAEEPPAAKEAEAVAVTEEAAVVTPEAEAPAEVETKEVVAEDQPAAAEKTTAEKTEEVETTPTETPEPAAEKEAKEEEKKPEAEVEAAKEEVKDEEKPAVEKPAEAEKKADTDEAPAEKTE 179
BLAST of eg_v1.0.primary_g6492.t1 vs. ExPASy TrEMBL
Match: A0A067ETF7|A0A067ETF7_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029569mg PE=4 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.682e-30 Identity = 155/191 (81.15%), Postives = 157/191 (82.20%), Query Frame = 0 Query: 1 MATVEVVSAKTALSEE-----PVKAEETKTTEEPVKAEETKTAEEPVKTEETKTEEVVASASAAPVAPEPVAEVPPAAKEAEAAAVTEEAAVVTPEAEAPAEVKTKEVVAEDQPAAAEKTTAEKTEEVETTPTETPEPAAEKEAKEEEKKPEAEVEAAQEEVKDEEKPAVEKPAEAEKKADTDEAPAEKTE 186 MATVEVVSAKTALSEE PVKAEETKTTEEPVKAEETKTA+EPVKTEETKTEEVVASASAAPVAPEPVAE PPAAKE VVAEDQPAAAEKTTAEKTEEVETTPTETPEPAAEKEAKEEEKKPEAEVEAA+EEVKDEEKPAVEKPAEAEKKADTD APAEKTE Sbjct: 1 MATVEVVSAKTALSEEIKAEEPVKAEETKTTEEPVKAEETKTADEPVKTEETKTEEVVASASAAPVAPEPVAEEPPAAKE---------------------------VVAEDQPAAAEKTTAEKTEEVETTPTETPEPAAEKEAKEEEKKPEAEVEAAKEEVKDEEKPAVEKPAEAEKKADTDGAPAEKTE 164 The following BLAST results are available for this feature:
BLAST of eg_v1.0.primary_g6492.t1 vs. ExPASy TrEMBL
Analysis Date: 2024-01-20 (Blastp of Citrus glauca CRC3463 v1.0 proteins vs UniProt TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of eg_v1.0.primary_g6492.t1 vs. ExPASy TrEMBL
Analysis Date: 2024-01-20 (Blastp of Citrus glauca CRC3463 v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of eg_v1.0.primary_g6492.t1 vs. ExPASy TrEMBL
Analysis Date: 2024-01-20 (Blastp of Citrus glauca CRC3463 v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus glauca CRC3463 v1.0 v1.0 proteins
Date Performed: 2024-01-20 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >eg_v1.0.primary_g6492.t1-ucr_v1 ID=eg_v1.0.primary_g6492.t1-ucr_v1; Name=eg_v1.0.primary_g6492.t1; organism=Citrus glauca; type=mRNA; length=561bpback to top protein sequence of eg_v1.0.primary_g6492.t1-ucr_v1 >eg_v1.0.primary_g6492.t1-ucr_v1 ID=eg_v1.0.primary_g6492.t1-ucr_v1; Name=eg_v1.0.primary_g6492.t1-ucr_v1; organism=Citrus glauca; type=polypeptide; length=186bpback to top mRNA from alignment at Pri_Scaffold_2:26837475..26838130+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=656bp; location=Sequence derived from: Pri_Scaffold_2:26837475..26838130+ (Citrus glaucaback to top Coding sequence (CDS) from alignment at Pri_Scaffold_2:26837475..26838130+ >eg_v1.0.primary_g6492.t1-ucr_v1 ID=eg_v1.0.primary_g6492.t1-ucr_v1; Name=eg_v1.0.primary_g6492.t1; organism=Citrus glauca; type=CDS; length=561bp; location=Sequence derived from: Pri_Scaffold_2:26837475..26838130+ (Citrus glaucaback to top |