eg_v1.0.primary_g6498.t1
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of eg_v1.0.primary_g6498.t1 vs. ExPASy TrEMBL
Match: V4W4K0|V4W4K0_CITCL (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017035mg PE=4 SV=1) HSP 1 Score: 214.157 bits (544), Expect = 1.529e-69 Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 Query: 1 MWRMLRPRKSPRVADETMLNGAHPLPMFVHGMNRRSRRDALNLAFSIIYTVVRVPVEVFSCFSQPHVNGAADGSWVSGEFTQISEMNHLMVSDSLRYAILM 101
MWRMLRPRKSPRVADETMLNGAHPLPMFVHGMNRRSRRDALNLAFSIIYTVVRVPVEVFSCFSQPHVNGAADGSWVSGEFTQISEMNHLMVSDSLRYAILM
Sbjct: 57 MWRMLRPRKSPRVADETMLNGAHPLPMFVHGMNRRSRRDALNLAFSIIYTVVRVPVEVFSCFSQPHVNGAADGSWVSGEFTQISEMNHLMVSDSLRYAILM 157
BLAST of eg_v1.0.primary_g6498.t1 vs. ExPASy TrEMBL
Match: A0A2H5PM47|A0A2H5PM47_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_147350 PE=4 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 3.867e-69 Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 Query: 1 MWRMLRPRKSPRVADETMLNGAHPLPMFVHGMNRRSRRDALNLAFSIIYTVVRVPVEVFSCFSQPHVNGAADGSWVSGEFTQISEMNHLMVSDSLRYAILM 101
MWRMLRPRKSPRVADETMLNGAHPLPMFVHGMNRRSRRDALNLAFSIIYTVVRVPVEVFSCFSQPHVNGAADGSWVSGEFTQISEMNHLMVSDSLRYAILM
Sbjct: 1 MWRMLRPRKSPRVADETMLNGAHPLPMFVHGMNRRSRRDALNLAFSIIYTVVRVPVEVFSCFSQPHVNGAADGSWVSGEFTQISEMNHLMVSDSLRYAILM 101
BLAST of eg_v1.0.primary_g6498.t1 vs. ExPASy TrEMBL
Match: A0A067EX36|A0A067EX36_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034207mg PE=4 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 3.867e-69 Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 Query: 1 MWRMLRPRKSPRVADETMLNGAHPLPMFVHGMNRRSRRDALNLAFSIIYTVVRVPVEVFSCFSQPHVNGAADGSWVSGEFTQISEMNHLMVSDSLRYAILM 101
MWRMLRPRKSPRVADETMLNGAHPLPMFVHGMNRRSRRDALNLAFSIIYTVVRVPVEVFSCFSQPHVNGAADGSWVSGEFTQISEMNHLMVSDSLRYAILM
Sbjct: 1 MWRMLRPRKSPRVADETMLNGAHPLPMFVHGMNRRSRRDALNLAFSIIYTVVRVPVEVFSCFSQPHVNGAADGSWVSGEFTQISEMNHLMVSDSLRYAILM 101
BLAST of eg_v1.0.primary_g6498.t1 vs. ExPASy TrEMBL
Match: A0A2N9INL2|A0A2N9INL2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54304 PE=4 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.286e-31 Identity = 60/109 (55.05%), Postives = 70/109 (64.22%), Query Frame = 0 Query: 1 MWRMLRP--------RKSPRVADETMLNGAHPLPMFVHGMNRRSRRDALNLAFSIIYTVVRVPVEVFSCFSQPHVNGAADGSWVSGEFTQISEMNHLMVSDSLRYAILM 101
MWR+L +KSPRVADE M + + ++ + RR FS IY VVR P+ + SCFS PHVNG ADG WVSGEF QISEMNHLMVSDS+RYAILM
Sbjct: 1 MWRILAAVGRNLQNIKKSPRVADENMFGAGNGAELPIYARDNMERRQRGWNGFSFIYNVVRAPISILSCFSHPHVNG-ADGLWVSGEFAQISEMNHLMVSDSMRYAILM 108
BLAST of eg_v1.0.primary_g6498.t1 vs. ExPASy TrEMBL
Match: F6HII7|F6HII7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0059g02120 PE=4 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.294e-31 Identity = 64/111 (57.66%), Postives = 74/111 (66.67%), Query Frame = 0 Query: 1 MWRMLRP--------RKSPRVADETMLNGAH--PLPMFVHGMNRRSRRDALNLAFSIIYTVVRVPVEVFSCFSQPHVNGAADGSWVSGEFTQISEMNHLMVSDSLRYAILM 101
MW ML RKSPRVADE M G + LP+F M RR+R FS +Y++VRVP+ + SCFS PHVNGA DG WVSG+F ISEMNHLMVSDS+RYAILM
Sbjct: 1 MWHMLAAMRRNFQNIRKSPRVADENMFGGGNQAELPIFGRDMERRARGWD---GFSAVYSIVRVPLSLLSCFSHPHVNGA-DGVWVSGDFAHISEMNHLMVSDSMRYAILM 107
BLAST of eg_v1.0.primary_g6498.t1 vs. ExPASy TrEMBL
Match: A0A438EFA0|A0A438EFA0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_081757 PE=4 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.294e-31 Identity = 64/111 (57.66%), Postives = 74/111 (66.67%), Query Frame = 0 Query: 1 MWRMLRP--------RKSPRVADETMLNGAH--PLPMFVHGMNRRSRRDALNLAFSIIYTVVRVPVEVFSCFSQPHVNGAADGSWVSGEFTQISEMNHLMVSDSLRYAILM 101
MW ML RKSPRVADE M G + LP+F M RR+R FS +Y++VRVP+ + SCFS PHVNGA DG WVSG+F ISEMNHLMVSDS+RYAILM
Sbjct: 1 MWHMLAAMRRNFQNIRKSPRVADENMFGGGNQAELPIFGRDMERRARGWD---GFSAVYSIVRVPLSLLSCFSHPHVNGA-DGVWVSGDFAHISEMNHLMVSDSMRYAILM 107
BLAST of eg_v1.0.primary_g6498.t1 vs. ExPASy TrEMBL
Match: A0A7N2MAD3|A0A7N2MAD3_QUELO (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.594e-31 Identity = 60/109 (55.05%), Postives = 72/109 (66.06%), Query Frame = 0 Query: 1 MWRMLRP--------RKSPRVADETMLNGAHPLPMFVHGMNRRSRRDALNLAFSIIYTVVRVPVEVFSCFSQPHVNGAADGSWVSGEFTQISEMNHLMVSDSLRYAILM 101
MWR+L +KSPRVADE M + + ++ +R R+ N FS IY+VVR P+ + SC S PHVNGA DG WVSGEF QISEMNHLMVSDS+RYAILM
Sbjct: 1 MWRILAAVGRNLKNIKKSPRVADENMFAAGNGAELPIYAPDRERRQRGWN-GFSFIYSVVRAPISILSCLSHPHVNGA-DGVWVSGEFAQISEMNHLMVSDSMRYAILM 107
BLAST of eg_v1.0.primary_g6498.t1 vs. ExPASy TrEMBL
Match: A0A2I4HJL4|A0A2I4HJL4_JUGRE (uncharacterized protein LOC109012639 OS=Juglans regia OX=51240 GN=LOC109012639 PE=4 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.486e-30 Identity = 62/113 (54.87%), Postives = 74/113 (65.49%), Query Frame = 0 Query: 1 MWRMLRP--------RKSPRVADETMLNGAH----PLPMFVHGMNRRSRRDALNLAFSIIYTVVRVPVEVFSCFSQPHVNGAADGSWVSGEFTQISEMNHLMVSDSLRYAILM 101
MWRML +KSPRVADE+M G + LP++ RR FS+IY+VVRVP+ + SCFS PHVNG DG WVSGEF Q+SEMNHLMV+DS+RYAILM
Sbjct: 1 MWRMLAAVRRNLQNIKKSPRVADESMFAGGNGGRDQLPIY-------GRRQNGWNGFSLIYSVVRVPISILSCFSHPHVNGT-DGVWVSGEFAQLSEMNHLMVNDSMRYAILM 105
BLAST of eg_v1.0.primary_g6498.t1 vs. ExPASy TrEMBL
Match: A0A5B7BSP1|A0A5B7BSP1_DAVIN (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_001975 PE=4 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.491e-30 Identity = 62/109 (56.88%), Postives = 70/109 (64.22%), Query Frame = 0 Query: 1 MWRML--------RPRKSPRVADETMLNGAHPLPMFVHGMNRRSRRDALNLAFSIIYTVVRVPVEVFSCFSQPHVNGAADGSWVSGEFTQISEMNHLMVSDSLRYAILM 101
MWRML RKSPRVADE M + + + N RR N FS+IY++ R P + SCFS PHVNGA DG W SGEFTQISEMNHLMVSDS+RYAILM
Sbjct: 1 MWRMLAVMRRNLQNMRKSPRVADENMFVDGNGAELPISARNIDGRRPGWN-GFSVIYSISRAPFSLLSCFSHPHVNGA-DGVWASGEFTQISEMNHLMVSDSMRYAILM 107
BLAST of eg_v1.0.primary_g6498.t1 vs. ExPASy TrEMBL
Match: A0A7J0DF88|A0A7J0DF88_9ERIC (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0030080 PE=4 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 5.026e-30 Identity = 66/114 (57.89%), Postives = 75/114 (65.79%), Query Frame = 0 Query: 1 MWRML--------RPRKSPRVADETML---NGAH--PLPMFVHGMNRRSRRDALNLAFSIIYTVVRVPVEVFSCFSQPHVNGAADGSWVSGEFTQISEMNHLMVSDSLRYAILM 101
MWRML RKSPRVADE M NG LPMF G+ RR R N FS+IY+VVR P+ + SC SQPH++GA DG WVS E +ISEMNHLMV+DSLRYAILM
Sbjct: 1 MWRMLMVMRRNLQNMRKSPRVADENMFGDRNGGELAELPMFGSGIKRR--RSGWN-RFSVIYSVVRAPISLLSCLSQPHISGA-DGVWVSSELGRISEMNHLMVNDSLRYAILM 110
BLAST of eg_v1.0.primary_g6498.t1 vs. Araport11
Match: AT5G35732.1 (| hypothetical protein | Chr5:13897961-13898263 FORWARD LENGTH=100 | 201606) HSP 1 Score: 85.1149 bits (209), Expect = 6.566e-23 Identity = 49/98 (50.00%), Postives = 61/98 (62.24%), Query Frame = 0 Query: 8 RKSPRVADETML----NGAHPLPMFVHGMNRRSRRDALNLAFSIIYTVVRVPVEVFSCFSQPHVNGAADGSWVSGEFTQISEMNHLMVSDSLRYAILM 101
RKSPRVAD+T L +GA P G+ RRD N ++R P + SCF+ P V+G DG WVSG++ ISE+NHLMVSDS+RYAILM
Sbjct: 16 RKSPRVADDTELPSSTSGAGP------GVVANGRRDGFN------SVIMRFPFSIISCFAVPRVSGT-DGLWVSGDYGSISEVNHLMVSDSMRYAILM 100
BLAST of eg_v1.0.primary_g6498.t1 vs. Araport11
Match: AT2G04795.1 (| hypothetical protein | Chr2:1683027-1683314 FORWARD LENGTH=95 | 201606) HSP 1 Score: 68.1662 bits (165), Expect = 2.602e-16 Identity = 37/94 (39.36%), Postives = 52/94 (55.32%), Query Frame = 0 Query: 8 RKSPRVADETMLNGAHPLPMFVHGMNRRSRRDALNLAFSIIYTVVRVPVEVFSCFSQPHVNGAADGSWVSGEFTQISEMNHLMVSDSLRYAILM 101
RKSPRVADE+ L + +++ P+ + SCFS P V+ ADG WVSG++ ++SE+NHLMV D +RYA+LM
Sbjct: 16 RKSPRVADESALPST-------------TVNGDHGGGNGSNGGIMKFPLSIMSCFSVPRVS-RADGVWVSGDYGRVSEVNHLMVCDGMRYALLM 95
BLAST of eg_v1.0.primary_g6498.t1 vs. Araport11
Match: AT5G35732.2 (| hypothetical protein | Chr5:13897961-13898927 FORWARD LENGTH=101 | 201606) HSP 1 Score: 66.6254 bits (161), Expect = 1.177e-15 Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 0 Query: 8 RKSPRVADETML----NGAHPLPMFVHGMNRRSRRDALNLAFSIIYTVVRVPVEVFSCFSQPHVNGAADGSWVSGEFTQISEMNHLMV 91
RKSPRVAD+T L +GA P G+ RRD N ++R P + SCF+ P V+G DG WVSG++ ISE+NHLMV
Sbjct: 16 RKSPRVADDTELPSSTSGAGP------GVVANGRRDGFN------SVIMRFPFSIISCFAVPRVSGT-DGLWVSGDYGSISEVNHLMV 90 The following BLAST results are available for this feature:
BLAST of eg_v1.0.primary_g6498.t1 vs. ExPASy TrEMBL
Analysis Date: 2024-01-20 (Blastp of Citrus glauca CRC3463 v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of eg_v1.0.primary_g6498.t1 vs. ExPASy TrEMBL
Analysis Date: 2024-01-20 (Blastp of Citrus glauca CRC3463 v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of eg_v1.0.primary_g6498.t1 vs. Araport11
Analysis Date: 2024-01-20 (Blastp of Citrus glauca CRC3463 v1.0 proteins vs Araport11) Total hits: 3 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus glauca CRC3463 v1.0 v1.0 proteins
Date Performed: 2024-01-20 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >eg_v1.0.primary_g6498.t1-ucr_v1 ID=eg_v1.0.primary_g6498.t1-ucr_v1; Name=eg_v1.0.primary_g6498.t1; organism=Citrus glauca; type=mRNA; length=306bpback to top protein sequence of eg_v1.0.primary_g6498.t1-ucr_v1 >eg_v1.0.primary_g6498.t1-ucr_v1 ID=eg_v1.0.primary_g6498.t1-ucr_v1; Name=eg_v1.0.primary_g6498.t1-ucr_v1; organism=Citrus glauca; type=polypeptide; length=101bpback to top mRNA from alignment at Pri_Scaffold_2:26883397..26883702+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=306bp; location=Sequence derived from: Pri_Scaffold_2:26883397..26883702+ (Citrus glaucaback to top Coding sequence (CDS) from alignment at Pri_Scaffold_2:26883397..26883702+ >eg_v1.0.primary_g6498.t1-ucr_v1 ID=eg_v1.0.primary_g6498.t1-ucr_v1; Name=eg_v1.0.primary_g6498.t1; organism=Citrus glauca; type=CDS; length=306bp; location=Sequence derived from: Pri_Scaffold_2:26883397..26883702+ (Citrus glaucaback to top |