evm.model.ctg152.24 | Citrus Genome Database

Transcript Overview


Name	evm.model.ctg152.24
Unique Name	evm.model.ctg152.24-Xiangshui_v1
Type	mRNA
Organism	Citrus limon (Lemon)
Sequence length	1562

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus limon cv. Xiangshui genome v1.0	2024-02-01
InterProScan Analysis for Citrus limon cv. Xiangshui v1.0 proteins	2024-02-08
Blastp of Citrus limon cv. Xiangshui v1.0 proteins vs UniProt TrEMBL	2024-02-08
Blastp of Citrus limon cv. Xiangshui v1.0 proteins vs UniProt Swissprot	2024-02-08
Blastp of Citrus limon cv. Xiangshui v1.0 proteins vs Araport11	2024-02-08

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
clxmpjR452	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
clxmpjR454	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
ccclxL188	Citrus clementina genome v1.0 (JGI)	Citrus clementina
ccclxL196	Citrus clementina genome v1.0 (JGI)	Citrus clementina
cauclxL268	Citrus australis genome v1.0 (UQ)	Citrus australis
cauclxL269	Citrus australis genome v1.0 (UQ)	Citrus australis
cauclxL273	Citrus australis genome v1.0 (UQ)	Citrus australis
cleclxL130	Citrus limon cv. Eureka genome v1.0	Citrus limon
cleclxL138	Citrus limon cv. Eureka genome v1.0	Citrus limon
cleclxL173	Citrus limon cv. Eureka genome v1.0	Citrus limon
cleclxL180	Citrus limon cv. Eureka genome v1.0	Citrus limon
ccrclxL286	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrclxL293	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrclxL634	Citrus australasica CRC3672 genome v1	Citrus australasica
ccrclxL641	Citrus australasica CRC3672 genome v1	Citrus australasica
clxcsR620	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
clxcsR621	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
clxcmR441	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
clxcmR447	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
clxcmjR441	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
clxcmjR454	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
clxdvaR272	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
clxdvaR280	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
clxdvbR271	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
clxdvbR279	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
clxswoR364	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
clxfhsR412	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
clxfhsR420	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
clxswoR370	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis

Orthologs


Gene/Transcript	Assembly	Species
gene-KPL70_018686-mRNA1	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
Cau_v1.alternate_g17632.t1	Citrus australasica CRC3672 genome v1	Citrus australasica
gene-KPL71_018864-mRNA1	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
JLX104760.1	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
Ciclev10013790m	Citrus clementina genome v1.0 (JGI)	Citrus clementina
Cg6g017120.1	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
Fh6g21230.1	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
g12621.t1	Citrus australis genome v1.0 (UQ)	Citrus australis
g12540.t1	Citrus australis genome v1.0 (UQ)	Citrus australis

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
NM_gene44334.t1	Citrus limon cv. Eureka genome v1.0	Citrus limon
NM_gene41110.t1	Citrus limon cv. Eureka genome v1.0	Citrus limon

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
evm.TU.ctg152.24	evm.TU.ctg152.24-Xiangshui_v1	Citrus limon	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
evm.model.ctg152.24.exon1	evm.model.ctg152.24.exon1-Xiangshui_v1	Citrus limon	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
evm.model.ctg152.24.utr3p1	evm.model.ctg152.24.utr3p1-Xiangshui_v1	Citrus limon	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
cds.evm.model.ctg152.24.CDS_1	cds.evm.model.ctg152.24.CDS_1-Xiangshui_v1	Citrus limon	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
evm.model.ctg152.24.utr5p1	evm.model.ctg152.24.utr5p1-Xiangshui_v1	Citrus limon	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
evm.model.ctg152.24-Xiangshui_v1	evm.model.ctg152.24-Xiangshui_v1	Citrus limon	polypeptide
evm.model.ctg152.24-Xiangshui_v1	evm.model.ctg152.24-Xiangshui_v1-protein	Citrus limon	polypeptide

Homology

[Close]

BLAST of evm.model.ctg152.24 vs. ExPASy TrEMBL
Match: V4UVH7|V4UVH7_CITCL (TFIIS central domain-containing protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10013790mg PE=4 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 1.849e-82
Identity = 121/129 (93.80%), Postives = 125/129 (96.90%), Query Frame = 0

Query:    1 MSQFKCCGYYRYKIRKNLLEGLPKVAGEVEESMKERVRACDPVEVAEWVELLMLKKLGPFNYGTKEVKLKYRSICFNVRDSNNPDLRRKILLGEVKPEKLVTMIPEEVARHKLRHEIGQMRERRLAKIR 129
            MSQFKCCGYYRYKIRKN LEGLPKVAGEVEESMKERVRACDPVEVA WVELLMLKKLGPFNYGTKEVKLKYRSICFNVRDSNNPDLRRKILLGEV+PEKLV MIP+ +ARHKLRHEIGQ+RERRLAKIR
Sbjct:    1 MSQFKCCGYYRYKIRKNFLEGLPKVAGEVEESMKERVRACDPVEVAAWVELLMLKKLGPFNYGTKEVKLKYRSICFNVRDSNNPDLRRKILLGEVEPEKLVRMIPKVMARHKLRHEIGQIRERRLAKIR 129

[Close]

BLAST of evm.model.ctg152.24 vs. ExPASy TrEMBL
Match: A0A067E8L6|A0A067E8L6_CITSI (TFIIS central domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g035854mg PE=4 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.107e-36
Identity = 74/147 (50.34%), Postives = 98/147 (66.67%), Query Frame = 0

Query:    2 SQFKCCGYYRYKIRKNLLEGLPKVAGEVEE-SMKERVRACDPVEVAEWVELLMLKKLGPFNYGTKEVKLKYRSICFNVRDSNNPDLRRKILLGEVKPEKLVTMIPEEVARHKLRHEIGQMRERRLAKIRDKDDDDEEEEKS--ECDD 145
            ++ KC    R  IR+ L+E L KV GEVEE   KE+VRACDPVEVA  VE ++ K +GP + GTK   ++YR+I FNV+D  NPD RRK+LLGEVKPE LVTM+ EE+A  + + +  Q+RE   AKI D     +++  +  ECDD
Sbjct:   45 AEIKCSDVTRTLIRERLVEALSKVGGEVEEIEKKEQVRACDPVEVAVAVESMLFKNMGP-SRGTK-AAVQYRAILFNVKDPKNPDFRRKLLLGEVKPETLVTMLSEEMASDERQRQTNQIREAAFAKIPDHSATADQKSAATLECDD 189

[Close]

BLAST of evm.model.ctg152.24 vs. ExPASy TrEMBL
Match: V4UTU2|V4UTU2_CITCL (TFIIS central domain-containing protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10013550mg PE=4 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.359e-36
Identity = 75/146 (51.37%), Postives = 95/146 (65.07%), Query Frame = 0

Query:    3 QFKCCGYYRYKIRKNLLEGLPKVAGEVEE-SMKERVRACDPVEVAEWVELLMLKKLGPFNYGTKEVKLKYRSICFNVRDSNNPDLRRKILLGEVKPEKLVTMIPEEVARHKLRHEIGQMRERRLAKIRDKDD--DDEEEEKSECDD 145
            + KC    R  IR+ L+E L KV GEVEE   KE+VRACDPVEVA  VE ++ K +GP + GTK   ++YR+I FNV+D  NPD RRK+LLGEVKPE LVTM+ EE+A  + + +  Q+RE   AKI D     D +     ECDD
Sbjct:    1 EIKCSDVTRTLIRERLVEALSKVGGEVEEMEKKEQVRACDPVEVAVAVESMLFKNMGP-SRGTK-AAVQYRAILFNVKDPKNPDFRRKLLLGEVKPETLVTMLSEEMAGDERQRQTNQIREAAFAKIPDHSATVDQKSAATLECDD 144

[Close]

BLAST of evm.model.ctg152.24 vs. ExPASy TrEMBL
Match: V4SVL2|V4SVL2_CITCL (TFIIS central domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10013888mg PE=4 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.586e-35
Identity = 75/147 (51.02%), Postives = 96/147 (65.31%), Query Frame = 0

Query:    2 SQFKCCGYYRYKIRKNLLEGLPKVAGEVEE-SMKERVRACDPVEVAEWVELLMLKKLGPFNYGTKEVKLKYRSICFNVRDSNNPDLRRKILLGEVKPEKLVTMIPEEVARHKLRHEIGQMRERRLAKIRDKDD--DDEEEEKSECDD 145
            ++ KC    R  IR+ L+E L KV GEVEE   KE+VRACDPVEVA  VE ++ K +GP + GTK   ++YR+I FNV+D  NPD RRK+LLGEVKPE LVTM+ EE+A  + + +  Q+RE   AKI D     D +     ECDD
Sbjct:  113 AEIKCSDVTRTLIRERLVEALSKVGGEVEEMEKKEQVRACDPVEVAVAVESMLFKNMGP-SRGTK-AAVQYRAILFNVKDPKNPDFRRKLLLGEVKPETLVTMLSEEMASDERQRQTNQIREAAFAKIPDHSATVDQKSAATLECDD 257

[Close]

BLAST of evm.model.ctg152.24 vs. ExPASy TrEMBL
Match: V4T0L9|V4T0L9_CITCL (TFIIS central domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10013562mg PE=4 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.524e-34
Identity = 74/144 (51.39%), Postives = 96/144 (66.67%), Query Frame = 0

Query:    2 SQFKCCGYYRYKIRKNLLEGLPKVAGEVEESMKE-RVRACDPVEVAEWVELLMLKKLGPFNYGTKEVKLKYRSICFNVRDSNNPDLRRKILLGEVKPEKLVTMIPEEVARHKLRHEIGQMRERRLAKIRDKDDDDEEEEKSECD 144
            ++ KC    R  +R+ LLE   KVAGEVE+  K+ +V ACDPV VA  VE ++ K +GP + G K   ++YR+I FNV+D  NPD RRK+LLGEVKPE LVTM+PEE+A    + +  Q+RE  LAKI D    DE+E  SECD
Sbjct:   62 AEIKCSDATRALVRERLLEAFTKVAGEVEDMEKKVQVSACDPVGVAVSVESVLYKNMGP-SKGAKAA-VRYRAILFNVKDPKNPDFRRKLLLGEVKPETLVTMLPEEMASDDRQTQNKQIREDALAKIPDHSAVDEKE--SECD 201

[Close]

BLAST of evm.model.ctg152.24 vs. ExPASy TrEMBL
Match: V4T0L4|V4T0L4_CITCL (TFIIS central domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10013633mg PE=4 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.161e-33
Identity = 74/144 (51.39%), Postives = 96/144 (66.67%), Query Frame = 0

Query:    2 SQFKCCGYYRYKIRKNLLEGLPKVAGEVEESMKE-RVRACDPVEVAEWVELLMLKKLGPFNYGTKEVKLKYRSICFNVRDSNNPDLRRKILLGEVKPEKLVTMIPEEVARHKLRHEIGQMRERRLAKIRDKDDDDEEEEKSECD 144
            ++ KC    R  +R+ LLE   KVAGEVE+  K+ +V ACDPV VA  VE ++ K +GP + G K   ++YR+I FNV+D  NPD RRK+LLGEVKPE LVTM+PEE+A    + +  Q+RE  LAKI D    DE+E  SECD
Sbjct:   63 AEIKCSDATRALVRERLLEAFTKVAGEVEDMEKKVQVSACDPVGVAVSVESVLYKNMGP-SKGAKAA-VRYRAILFNVKDPKNPDFRRKLLLGEVKPETLVTMLPEEMASDDRQTQNKQIREDALAKIPDHSAVDEKE--SECD 202

[Close]

BLAST of evm.model.ctg152.24 vs. ExPASy TrEMBL
Match: A0A059DDA4|A0A059DDA4_EUCGR (Transcription elongation factor (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A007741 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.891e-33
Identity = 66/121 (54.55%), Postives = 88/121 (72.73%), Query Frame = 0

Query:    5 KCCGYYRYKIRKNLLEGLPKVAGEVEESMKERVRACDPVEVAEWVELLMLKKLGPFNYGTKEVKLKYRSICFNVRDSNNPDLRRKILLGEVKPEKLVTMIPEEVARHKLRHEIGQMRERRL 125
            KC    R K+R+ L+E L KVA EV++ MK+ V ACDP+ VA  VE +M +K+G  N GT+  K KYRSI FN++D NNPDLRRK+LLGEVKPE+L+TM P+E+A  + + E  Q++ER L
Sbjct:   16 KCDDSLRDKVRELLVEALSKVASEVDDDMKDEVNACDPIRVAVIVESIMFEKMGRSN-GTQ--KFKYRSIMFNIKDPNNPDLRRKVLLGEVKPERLITMTPDEMASDQRQRENHQIKERAL 133

[Close]

BLAST of evm.model.ctg152.24 vs. ExPASy TrEMBL
Match: A0A067E4S8|A0A067E4S8_CITSI (TFIIS central domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g042978mg PE=4 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.425e-32
Identity = 73/144 (50.69%), Postives = 95/144 (65.97%), Query Frame = 0

Query:    2 SQFKCCGYYRYKIRKNLLEGLPKVAGEVEESMKE-RVRACDPVEVAEWVELLMLKKLGPFNYGTKEVKLKYRSICFNVRDSNNPDLRRKILLGEVKPEKLVTMIPEEVARHKLRHEIGQMRERRLAKIRDKDDDDEEEEKSECD 144
            ++ KC    R  +R+ LLE   KVAGEVE+  K+ +V ACDPV VA  VE ++ K +GP + G K   ++YR+I FNV+D  NPD RRK+LLGEVKPE LVTM+PEE+A    + +  Q+RE  LAKI D     E+E  SECD
Sbjct:   88 AEIKCSDATRALVRERLLEAFTKVAGEVEDMEKKVQVSACDPVGVAVSVESVLYKNMGP-SKGAKAA-VRYRAILFNVKDPKNPDFRRKLLLGEVKPETLVTMLPEEMASDDRQSQNKQIREDALAKIPDHSAVAEKE--SECD 227

[Close]

BLAST of evm.model.ctg152.24 vs. ExPASy TrEMBL
Match: A0A836Y687|A0A836Y687_9ROSI (Transcription elongation factor OS=Salix suchowensis OX=1278906 GN=IMY05_006G0091200 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.883e-31
Identity = 64/124 (51.61%), Postives = 85/124 (68.55%), Query Frame = 0

Query:    2 SQFKCCGYYRYKIRKNLLEGLPKVAGEVEESMKERVRACDPVEVAEWVELLMLKKLGPFNYGTKEVKLKYRSICFNVRDSNNPDLRRKILLGEVKPEKLVTMIPEEVARHKLRHEIGQMRERRL 125
            +  KC    R K+R+ L E L KVA E +E +++ V ACDP+ VA  VE +M +KLG  N   K   LKYRSI FN++D NNPDLRRK+LLGEV+PE+LVTM PEE+A  + + E  Q++E+ L
Sbjct:  176 TMVKCNDALRDKVRELLAEALSKVASEADEDIRDEVEACDPIRVAVSVESMMFEKLGRSNGAQK---LKYRSIMFNIKDQNNPDLRRKVLLGEVQPERLVTMSPEEMASEQRKRENNQIKEKVL 296

[Close]

BLAST of evm.model.ctg152.24 vs. ExPASy TrEMBL
Match: A0A5N5MB68|A0A5N5MB68_9ROSI (Transcription elongation factor OS=Salix brachista OX=2182728 GN=DKX38_009560 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.040e-31
Identity = 64/124 (51.61%), Postives = 85/124 (68.55%), Query Frame = 0

Query:    2 SQFKCCGYYRYKIRKNLLEGLPKVAGEVEESMKERVRACDPVEVAEWVELLMLKKLGPFNYGTKEVKLKYRSICFNVRDSNNPDLRRKILLGEVKPEKLVTMIPEEVARHKLRHEIGQMRERRL 125
            +  KC    R K+R+ L E L KVA E +E +++ V ACDP+ VA  VE +M +KLG  N   K   LKYRSI FN++D NNPDLRRK+LLGEV+PE+LVTM PEE+A  + + E  Q++E+ L
Sbjct:  176 TMVKCNDALRDKVRELLAEALSKVASEADEDIRDEVEACDPIRVAVSVESMMFEKLGRSNGAQK---LKYRSIMFNIKDQNNPDLRRKVLLGEVQPERLVTMSPEEMASEQRKRENNQIKEKVL 296

[Close]

BLAST of evm.model.ctg152.24 vs. ExPASy Swiss-Prot
Match: RDO2_ARATH (Transcription elongation factor TFIIS OS=Arabidopsis thaliana OX=3702 GN=TFIIS PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.869e-30
Identity = 62/125 (49.60%), Postives = 83/125 (66.40%), Query Frame = 0

Query:    1 MSQFKCCGYYRYKIRKNLLEGLPKVAGEVEESMKERVRACDPVEVAEWVELLMLKKLGPFNYGTKEVKLKYRSICFNVRDSNNPDLRRKILLGEVKPEKLVTMIPEEVARHKLRHEIGQMRERRL 125
             +  KC    R KIR+ L+E L +VAGE ++  +E V A DP+ VA  VE LM +KLG     T   KLKYRSI FN+RDSNNPDLRR++L GE+ PEKL+T+  E++A  K + E  Q++E+ L
Sbjct:  201 TAMLKCNDPVRDKIRELLVEALCRVAGEADDYERESVNASDPLRVAVSVESLMFEKLG---RSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPEKLITLSAEDMASDKRKQENNQIKEKAL 322

[Close]

BLAST of evm.model.ctg152.24 vs. Araport11
Match: | (Symbols: TFIIS, RDO2 | transcript elongation factor IIS, REDUCED DORMANCY 2 | chr2:16134802-16136319 FORWARD LENGTH=378)

HSP 1 Score: 114.005 bits (284), Expect = 1.015e-30
Identity = 62/125 (49.60%), Postives = 83/125 (66.40%), Query Frame = 0

Query:    1 MSQFKCCGYYRYKIRKNLLEGLPKVAGEVEESMKERVRACDPVEVAEWVELLMLKKLGPFNYGTKEVKLKYRSICFNVRDSNNPDLRRKILLGEVKPEKLVTMIPEEVARHKLRHEIGQMRERRL 125
             +  KC    R KIR+ L+E L +VAGE ++  +E V A DP+ VA  VE LM +KLG     T   KLKYRSI FN+RDSNNPDLRR++L GE+ PEKL+T+  E++A  K + E  Q++E+ L
Sbjct:  201 TAMLKCNDPVRDKIRELLVEALCRVAGEADDYERESVNASDPLRVAVSVESLMFEKLG---RSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPEKLITLSAEDMASDKRKQENNQIKEKAL 322

[Close]

BLAST of evm.model.ctg152.24 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr2:17787454-17788197 REVERSE LENGTH=247)

HSP 1 Score: 97.0561 bits (240), Expect = 2.931e-25
Identity = 58/113 (51.33%), Postives = 75/113 (66.37%), Query Frame = 0

Query:   11 RYKIRKNLLEGLPKVAGE-VEESMKERVRACDPVEVAEWVELLMLKKLGPFNYGTKEVKLKYRSICFNVRDSNNPDLRRKILLGEVKPEKLVTMIPEEVARHKLRHEIGQMRE 122
            R K+R+ L   L KVA E V+  MK RV ACDP  VA  VE  M +KLG F  G    K KYRSI FN+ DSNNPDLRRK+L+GE+  E+LVTM  +E+   K++ E+ +++E
Sbjct:  117 RDKVREILQTSLVKVASEIVDTEMKTRVTACDPSVVAVSVESAMFEKLGCF-MGPH--KAKYRSILFNMGDSNNPDLRRKVLIGEINGERLVTMERQEMGSEKIQKEVQRIKE 226

[Close]

BLAST of evm.model.ctg152.24 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:10299945-10301228 FORWARD LENGTH=266)

HSP 1 Score: 88.9669 bits (219), Expect = 4.349e-22
Identity = 55/100 (55.00%), Postives = 66/100 (66.00%), Query Frame = 0

Query:   11 RYKIRKNLLEGLPKVAGEVEES-MKERVRACDPVEVAEWVELLMLKKLGPFNYGTKEVKLKYRSICFNVRDSNNPDLRRKILLGEVKPEKLVTMIPEEVA 109
            R K+R+ L   L KVA EV ++ MK RV ACDP  VA  VE  M + LG F  G +  K KYRSI FN+ DSNNPDLRRK+LLGE+  E+LV M  EE+ 
Sbjct:  118 RDKVREILQTSLAKVASEVVDTEMKTRVTACDPWVVAVSVETAMFENLGCF-MGPQ--KAKYRSILFNMGDSNNPDLRRKVLLGEISGERLVKMEKEEMG 214

[Close]

BLAST of evm.model.ctg152.24 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:16924102-16924851 REVERSE LENGTH=233)

HSP 1 Score: 68.5514 bits (166), Expect = 1.366e-14
Identity = 47/115 (40.87%), Postives = 64/115 (55.65%), Query Frame = 0

Query:   11 RYKIRKNLLEGLPKVAGEVEES-MKERV-RACDPVEVAEWVELLMLKKLGPFNYGTKEVKLKYRSICFNVRDSNNPDLRRKILLGEVKPEKLVTMIPEEVARHKLRHEIGQMRER 123
            R K+ + L   L KVA EV ++ MK RV   CDP  VA  VE  M                   SI FN+ DSNNPDLRRK+L+GE+  E+LV M  +E+   K++ E+ +++ER
Sbjct:  117 RDKVHEILQSSLAKVATEVVDTEMKRRVMTVCDPWVVAVSVESAM-------------------SILFNMGDSNNPDLRRKVLIGEISGERLVKMEKDEMGSEKIQKEVQRIKER 212

[Close]

BLAST of evm.model.ctg152.24 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:8885550-8889484 FORWARD LENGTH=1007)

HSP 1 Score: 57.7658 bits (138), Expect = 2.382e-10
Identity = 36/97 (37.11%), Postives = 56/97 (57.73%), Query Frame = 0

Query:   41 DPVEVAEWVELLMLKKLGPFNYGTKEVKLKYRSICFNVRDSNNPDLRRKILLGEVKPEKLVTMIPEEVARHKLRHEIGQMRERRLAK---IRDKDDD 134
            DP  +A  +EL + K  G  N   K+ K K RS+ FN++D NNP+LR  ++ G++ PE+L  M  EE+A  +L  +  Q +   +A+   +RD D D
Sbjct:  359 DPELLASKIELELFKLFGGVN---KKYKEKGRSLLFNLKDKNNPELRESVMSGKISPERLCNMTAEELASKELS-QWRQAKAEEMAEMVVLRDTDID 451

[Close]

BLAST of evm.model.ctg152.24 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:8885550-8889484 FORWARD LENGTH=997)

HSP 1 Score: 57.7658 bits (138), Expect = 2.858e-10
Identity = 36/97 (37.11%), Postives = 56/97 (57.73%), Query Frame = 0

Query:   41 DPVEVAEWVELLMLKKLGPFNYGTKEVKLKYRSICFNVRDSNNPDLRRKILLGEVKPEKLVTMIPEEVARHKLRHEIGQMRERRLAK---IRDKDDD 134
            DP  +A  +EL + K  G  N   K+ K K RS+ FN++D NNP+LR  ++ G++ PE+L  M  EE+A  +L  +  Q +   +A+   +RD D D
Sbjct:  359 DPELLASKIELELFKLFGGVN---KKYKEKGRSLLFNLKDKNNPELRESVMSGKISPERLCNMTAEELASKELS-QWRQAKAEEMAEMVVLRDTDID 451

[Close]

BLAST of evm.model.ctg152.24 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:8885550-8888157 FORWARD LENGTH=782)

HSP 1 Score: 57.7658 bits (138), Expect = 3.008e-10
Identity = 36/97 (37.11%), Postives = 56/97 (57.73%), Query Frame = 0

Query:   41 DPVEVAEWVELLMLKKLGPFNYGTKEVKLKYRSICFNVRDSNNPDLRRKILLGEVKPEKLVTMIPEEVARHKLRHEIGQMRERRLAK---IRDKDDD 134
            DP  +A  +EL + K  G  N   K+ K K RS+ FN++D NNP+LR  ++ G++ PE+L  M  EE+A  +L  +  Q +   +A+   +RD D D
Sbjct:  359 DPELLASKIELELFKLFGGVN---KKYKEKGRSLLFNLKDKNNPELRESVMSGKISPERLCNMTAEELASKELS-QWRQAKAEEMAEMVVLRDTDID 451

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BLAST of evm.model.ctg152.24 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:8885550-8888157 FORWARD LENGTH=735)

HSP 1 Score: 56.6102 bits (135), Expect = 6.025e-10
Identity = 36/97 (37.11%), Postives = 56/97 (57.73%), Query Frame = 0

Query:   41 DPVEVAEWVELLMLKKLGPFNYGTKEVKLKYRSICFNVRDSNNPDLRRKILLGEVKPEKLVTMIPEEVARHKLRHEIGQMRERRLAK---IRDKDDD 134
            DP  +A  +EL + K  G  N   K+ K K RS+ FN++D NNP+LR  ++ G++ PE+L  M  EE+A  +L  +  Q +   +A+   +RD D D
Sbjct:  359 DPELLASKIELELFKLFGGVN---KKYKEKGRSLLFNLKDKNNPELRESVMSGKISPERLCNMTAEELASKELS-QWRQAKAEEMAEMVVLRDTDID 451

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Query:   41 DPVEVAEWVELLMLKKLGPFNYGTKEVKLKYRSICFNVRDSNNPDLRRKILLGEVKPEKLVTMIPEEVARHKLRHEIGQMRERRLAK---IRDKDDD 134
            DP  +A  +EL + K  G  N   K+ K K RS+ FN++D NNP+LR  ++ G++ PE+L  M  EE+A  +L  +  Q +   +A+   +RD D D
Sbjct:  359 DPELLASKIELELFKLFGGVN---KKYKEKGRSLLFNLKDKNNPELRESVMSGKISPERLCNMTAEELASKELS-QWRQAKAEEMAEMVVLRDTDID 451

[Close]

Query:   41 DPVEVAEWVELLMLKKLGPFNYGTKEVKLKYRSICFNVRDSNNPDLRRKILLGEVKPEKLVTMIPEEVARHKLRHEIGQMRERRLAK---IRDKDDD 134
            DP  +A  +EL + K  G  N   K+ K K RS+ FN++D NNP+LR  ++ G++ PE+L  M  EE+A  +L  +  Q +   +A+   +RD D D
Sbjct:  359 DPELLASKIELELFKLFGGVN---KKYKEKGRSLLFNLKDKNNPELRESVMSGKISPERLCNMTAEELASKELS-QWRQAKAEEMAEMVVLRDTDID 451

The following BLAST results are available for this feature:

BLAST of evm.model.ctg152.24 vs. ExPASy TrEMBL
BLAST of evm.model.ctg152.24 vs. ExPASy Swiss-Prot
BLAST of evm.model.ctg152.24 vs. Araport11

BLAST of evm.model.ctg152.24 vs. ExPASy TrEMBL
Analysis Date: 2024-02-08 (Blastp of Citrus limon cv. Xiangshui v1.0 proteins vs UniProt TrEMBL)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
V4UVH7\|V4UVH7_CITCL	1.849e-82	93.80	TFIIS central domain-containing protein (Fragment)...	[more]
A0A067E8L6\|A0A067E8L6_CITSI	1.107e-36	50.34	TFIIS central domain-containing protein OS=Citrus ...	[more]
V4UTU2\|V4UTU2_CITCL	2.359e-36	51.37	TFIIS central domain-containing protein (Fragment)...	[more]
V4SVL2\|V4SVL2_CITCL	1.586e-35	51.02	TFIIS central domain-containing protein OS=Citrus ...	[more]
V4T0L9\|V4T0L9_CITCL	8.524e-34	51.39	TFIIS central domain-containing protein OS=Citrus ...	[more]
V4T0L4\|V4T0L4_CITCL	1.161e-33	51.39	TFIIS central domain-containing protein OS=Citrus ...	[more]
A0A059DDA4\|A0A059DDA4_EUCGR	6.891e-33	54.55	Transcription elongation factor (Fragment) OS=Euca...	[more]
A0A067E4S8\|A0A067E4S8_CITSI	1.425e-32	50.69	TFIIS central domain-containing protein (Fragment)...	[more]
A0A836Y687\|A0A836Y687_9ROSI	2.883e-31	51.61	Transcription elongation factor OS=Salix suchowens...	[more]
A0A5N5MB68\|A0A5N5MB68_9ROSI	3.040e-31	51.61	Transcription elongation factor OS=Salix brachista...	[more]

BLAST of evm.model.ctg152.24 vs. ExPASy Swiss-Prot
Analysis Date: 2024-02-08 (Blastp of Citrus limon cv. Xiangshui v1.0 proteins vs UniProt Swissprot)
Total hits: 1

Position :

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Match Name	E-value	Identity	Description
RDO2_ARATH	9.869e-30	49.60	Transcription elongation factor TFIIS OS=Arabidops...	[more]

BLAST of evm.model.ctg152.24 vs. Araport11
Analysis Date: 2024-02-08 (Blastp of Citrus limon cv. Xiangshui v1.0 proteins vs Araport11)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
\|	1.015e-30	49.60	Symbols: TFIIS, RDO2 \| transcript elongation facto...	[more]
\|	2.931e-25	51.33	Symbols: no symbol available \| no full name availa...	[more]
\|	4.349e-22	55.00	Symbols: no symbol available \| no full name availa...	[more]
\|	1.366e-14	40.87	Symbols: no symbol available \| no full name availa...	[more]
\|	2.382e-10	37.11	Symbols: no symbol available \| no full name availa...	[more]
\|	2.858e-10	37.11	Symbols: no symbol available \| no full name availa...	[more]
\|	3.008e-10	37.11	Symbols: no symbol available \| no full name availa...	[more]
\|	6.025e-10	37.11	Symbols: no symbol available \| no full name availa...	[more]
\|	6.025e-10	37.11	Symbols: no symbol available \| no full name availa...	[more]
\|	6.025e-10	37.11	Symbols: no symbol available \| no full name availa...	[more]

InterPro

Analysis Name: InterProScan Analysis for Citrus limon cv. Xiangshui v1.0 proteins
Date Performed: 2024-02-08

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003618	Transcription elongation factor S-II, central domain	PFAM	PF07500	TFIIS_M	coord: 11..126 e-value: 2.3E-17 score: 74.8
IPR003618	Transcription elongation factor S-II, central domain	PROSITE	PS51321	TFIIS_CENTRAL	coord: 10..136 score: 17.800133
IPR036575	Transcription elongation factor S-II, central domain superfamily	GENE3D	1.10.472.30		coord: 3..110 e-value: 7.5E-19 score: 70.0
IPR036575	Transcription elongation factor S-II, central domain superfamily	SUPERFAMILY	46942	Elongation factor TFIIS domain 2	coord: 6..109
None	No IPR available	PANTHER	PTHR11477	TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN	coord: 10..131

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr8:31007833..31009394-
coding sequence from alignment at Chr8:31007833..31009394-

mRNA sequence

>evm.model.ctg152.24-Xiangshui_v1 ID=evm.model.ctg152.24-Xiangshui_v1; Name=evm.model.ctg152.24; organism=Citrus limon; type=mRNA; length=1562bp
ATACATAACTATCAAATCGGACACCATCTCAAATCCAAAAAACATTACAC
TTTACAGTAAAATATTAAAATGAGTTCTTAAAAGTGCTTTTGTGGGTATT
CTTTTGTACAATGACAAAATAGCGATATATTTTTTTTGATGCATCGTTAT
GTTCTTTTGTTTCTGCAACTTACTTTAATCCAGTGGATAGTCAATTAACT
TGTGTGCATCCATTAGAAGCTTTTATTTCAAATGAAAGTAATTAGGGCTA
GAGAGAATATCAATTTGGAACCAAAATCTTGAGTTCAACTTCTAAGGATT
GGTATTATTATTATTATAGGGTTTTAGAGCAAAAAGGAGAGAGCAGTTAA
AGATCTTCTTGTCGGCTTCACTTTCCTCTCTAAGAGTAACGGTTTTGCAT
GGTTGGTTTTGGAAACTGTCTCTAATTCTTGTAGGCCAAACAAACACAAA
AATCAGATTATTAATGCAGTTTCCAAGATACTCTTGCCCACATTATTCTG
TTTTTCATATAAATACTTGCCTAAATTAATCATTCTGATTTCGATTGCTA
ATTTCTTCATTCAACCCAGCCAAGAAACTGATAATCCATCTGATATATTC
TCACCCAAATATATATATATTTTTTCTGTTGGTTGTCAAGAAACCAAAGG
AAGTGTACTAGTACTACTAATGTCATTTCTTGTTATTAAAACTTGCGGTG
ATGAATCAATTTAAAGTACCAAAATATTAAGAGAGAAATTACAGAGTGAA
GATGAGATATTAATTCCAGCCAAAAATTCTAAGGCCGGTTTTCCGAAGAT
AAAGATCGAAGAAGAGGAGCAGGCTGATTTTACTGATAGCTTCAGGAGAC
CACTTGGAGTTCAGCCTCCTAATGTTTGTAAATGAGAGCTTAGTAAATGT
CCCAGTTCAAATGTTGTGGTTATTATCGATACAAGATTCGTAAAAATCTT
CTAGAAGGGTTGCCTAAAGTTGCTGGCGAGGTTGAAGAATCGATGAAGGA
ACGAGTAAGAGCTTGTGACCCAGTTGAAGTTGCTGAATGGGTTGAATTAT
TGATGTTAAAGAAGCTGGGTCCTTTCAATTATGGGACCAAGGAAGTCAAG
CTCAAGTACAGATCCATATGTTTCAATGTAAGGGATTCAAACAATCCTGA
TTTGAGAAGAAAGATTCTTCTTGGAGAGGTGAAGCCTGAGAAACTTGTCA
CGATGATTCCTGAAGAGGTGGCAAGACATAAATTAAGGCATGAAATCGGA
CAAATGAGAGAGAGACGCTTAGCCAAGATTCGGGACAAGGATGATGATGA
TGAGGAGGAGGAGAAATCTGAATGTGATGATGCTCGATGATTTAATTCAG
TCATTATAATGTTTTCAAATGTACATACGCTGAGATGATATTGTTTACTT
ACTTGACTTATTTATAACATTACACATTGTGTCACATTACACGCTAGGTA
TTCCCAGGTGTGTGTGAGTATGTGTTGCTTTGATTTTTCTATTTGCTTTT
TAGCATATGTTTGGTCAATTTTGAATTATTTCATATCTTTTTAGTTGGAC
ATTAAACAATAT

protein sequence of evm.model.ctg152.24-Xiangshui_v1

>evm.model.ctg152.24-Xiangshui_v1 ID=evm.model.ctg152.24-Xiangshui_v1; Name=evm.model.ctg152.24-Xiangshui_v1; organism=Citrus limon; type=polypeptide; length=147bp
MSQFKCCGYYRYKIRKNLLEGLPKVAGEVEESMKERVRACDPVEVAEWVE
LLMLKKLGPFNYGTKEVKLKYRSICFNVRDSNNPDLRRKILLGEVKPEKL
VTMIPEEVARHKLRHEIGQMRERRLAKIRDKDDDDEEEEKSECDDAR

mRNA from alignment at Chr8:31007833..31009394-

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=1562bp; location=Sequence derived from: Chr8:31007833..31009394- (Citrus limon
ATACATAACTATCAAATCGGACACCATCTCAAATCCAAAAAACATTACAC
TTTACAGTAAAATATTAAAATGAGTTCTTAAAAGTGCTTTTGTGGGTATT
CTTTTGTACAATGACAAAATAGCGATATATTTTTTTTGATGCATCGTTAT
GTTCTTTTGTTTCTGCAACTTACTTTAATCCAGTGGATAGTCAATTAACT
TGTGTGCATCCATTAGAAGCTTTTATTTCAAATGAAAGTAATTAGGGCTA
GAGAGAATATCAATTTGGAACCAAAATCTTGAGTTCAACTTCTAAGGATT
GGTATTATTATTATTATAGGGTTTTAGAGCAAAAAGGAGAGAGCAGTTAA
AGATCTTCTTGTCGGCTTCACTTTCCTCTCTAAGAGTAACGGTTTTGCAT
GGTTGGTTTTGGAAACTGTCTCTAATTCTTGTAGGCCAAACAAACACAAA
AATCAGATTATTAATGCAGTTTCCAAGATACTCTTGCCCACATTATTCTG
TTTTTCATATAAATACTTGCCTAAATTAATCATTCTGATTTCGATTGCTA
ATTTCTTCATTCAACCCAGCCAAGAAACTGATAATCCATCTGATATATTC
TCACCCAAATATATATATATTTTTTCTGTTGGTTGTCAAGAAACCAAAGG
AAGTGTACTAGTACTACTAATGTCATTTCTTGTTATTAAAACTTGCGGTG
ATGAATCAATTTAAAGTACCAAAATATTAAGAGAGAAATTACAGAGTGAA
GATGAGATATTAATTCCAGCCAAAAATTCTAAGGCCGGTTTTCCGAAGAT
AAAGATCGAAGAAGAGGAGCAGGCTGATTTTACTGATAGCTTCAGGAGAC
CACTTGGAGTTCAGCCTCCTAATGTTTGTAAATGAGAGCTTAGTAAATGT
CCCAGTTCAAATGTTGTGGTTATTATCGATACAAGATTCGTAAAAATCTT
CTAGAAGGGTTGCCTAAAGTTGCTGGCGAGGTTGAAGAATCGATGAAGGA
ACGAGTAAGAGCTTGTGACCCAGTTGAAGTTGCTGAATGGGTTGAATTAT
TGATGTTAAAGAAGCTGGGTCCTTTCAATTATGGGACCAAGGAAGTCAAG
CTCAAGTACAGATCCATATGTTTCAATGTAAGGGATTCAAACAATCCTGA
TTTGAGAAGAAAGATTCTTCTTGGAGAGGTGAAGCCTGAGAAACTTGTCA
CGATGATTCCTGAAGAGGTGGCAAGACATAAATTAAGGCATGAAATCGGA
CAAATGAGAGAGAGACGCTTAGCCAAGATTCGGGACAAGGATGATGATGA
TGAGGAGGAGGAGAAATCTGAATGTGATGATGCTCGATGATTTAATTCAG
TCATTATAATGTTTTCAAATGTACATACGCTGAGATGATATTGTTTACTT
ACTTGACTTATTTATAACATTACACATTGTGTCACATTACACGCTAGGTA
TTCCCAGGTGTGTGTGAGTATGTGTTGCTTTGATTTTTCTATTTGCTTTT
TAGCATATGTTTGGTCAATTTTGAATTATTTCATATCTTTTTAGTTGGAC
ATTAAACAATAT

Coding sequence (CDS) from alignment at Chr8:31007833..31009394-

>evm.model.ctg152.24-Xiangshui_v1 ID=evm.model.ctg152.24-Xiangshui_v1; Name=evm.model.ctg152.24; organism=Citrus limon; type=CDS; length=444bp; location=Sequence derived from: Chr8:31007833..31009394- (Citrus limon
ATGTCCCAGTTCAAATGTTGTGGTTATTATCGATACAAGATTCGTAAAAA
TCTTCTAGAAGGGTTGCCTAAAGTTGCTGGCGAGGTTGAAGAATCGATGA
AGGAACGAGTAAGAGCTTGTGACCCAGTTGAAGTTGCTGAATGGGTTGAA
TTATTGATGTTAAAGAAGCTGGGTCCTTTCAATTATGGGACCAAGGAAGT
CAAGCTCAAGTACAGATCCATATGTTTCAATGTAAGGGATTCAAACAATC
CTGATTTGAGAAGAAAGATTCTTCTTGGAGAGGTGAAGCCTGAGAAACTT
GTCACGATGATTCCTGAAGAGGTGGCAAGACATAAATTAAGGCATGAAAT
CGGACAAATGAGAGAGAGACGCTTAGCCAAGATTCGGGACAAGGATGATG
ATGATGAGGAGGAGGAGAAATCTGAATGTGATGATGCTCGATGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003618	TFIIS_cen_dom
IPR036575	TFIIS_cen_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	DNA-templated transcription