evm.model.ctg152.4
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of evm.model.ctg152.4 vs. ExPASy TrEMBL
Match: A0A067EQE4|A0A067EQE4_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029505mg PE=4 SV=1) HSP 1 Score: 285.804 bits (730), Expect = 1.594e-96 Identity = 143/146 (97.95%), Postives = 144/146 (98.63%), Query Frame = 0 Query: 1 MALSLLFSSPLSSSSSSIFSTPYSSPMAFTASPIPRLHMKSMGHHHLKSCKSFCYISKKRGEMIVKVSSDAEVVDSDEPLSESDDEEYFPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 146 MALSLLFSSPLSSSSSSIFSTPYSSPMAFTASPIPRLHMKSMGHHHLKSCKSFC ISKKRGE+IVKVSSDAEVVDSDEP SESDDEEYFPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV Sbjct: 47 MALSLLFSSPLSSSSSSIFSTPYSSPMAFTASPIPRLHMKSMGHHHLKSCKSFCDISKKRGELIVKVSSDAEVVDSDEPQSESDDEEYFPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 192
BLAST of evm.model.ctg152.4 vs. ExPASy TrEMBL
Match: V4T2J2|V4T2J2_CITCL (50S ribosomal protein 5 alpha, chloroplastic OS=Citrus clementina OX=85681 GN=CICLE_v10013042mg PE=4 SV=1) HSP 1 Score: 280.796 bits (717), Expect = 3.644e-95 Identity = 142/146 (97.26%), Postives = 143/146 (97.95%), Query Frame = 0 Query: 1 MALSLLFSSPLSSSSSSIFSTPYSSPMAFTASPIPRLHMKSMGHHHLKSCKSFCYISKKRGEMIVKVSSDAEVVDSDEPLSESDDEEYFPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 146 MALSLLFSSPLSSSSSSIFSTPYSSPMAFTASPIPRLHMKSMGHHHLKSCKSFC ISKKRGE+IVKVSSDAEVVDSDEP SESDDEEYFPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPP KMNKLKNV Sbjct: 1 MALSLLFSSPLSSSSSSIFSTPYSSPMAFTASPIPRLHMKSMGHHHLKSCKSFCDISKKRGELIVKVSSDAEVVDSDEPQSESDDEEYFPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPLKMNKLKNV 146
BLAST of evm.model.ctg152.4 vs. ExPASy TrEMBL
Match: A0A2H5N1K2|A0A2H5N1K2_CITUN (50S ribosomal protein 5 alpha, chloroplastic OS=Citrus unshiu OX=55188 GN=CUMW_007360 PE=4 SV=1) HSP 1 Score: 278.87 bits (712), Expect = 1.694e-94 Identity = 141/146 (96.58%), Postives = 143/146 (97.95%), Query Frame = 0 Query: 1 MALSLLFSSPLSSSSSSIFSTPYSSPMAFTASPIPRLHMKSMGHHHLKSCKSFCYISKKRGEMIVKVSSDAEVVDSDEPLSESDDEEYFPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 146 MALSLLFSSPLSSSSSSIFSTPYSSPMAFTASPIPRLHMKSMGHHH KSCKSFC ISKKRGE+IVKVSSDAEVVD+DEP SESDDEEYFPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV Sbjct: 1 MALSLLFSSPLSSSSSSIFSTPYSSPMAFTASPIPRLHMKSMGHHHPKSCKSFCDISKKRGELIVKVSSDAEVVDNDEPQSESDDEEYFPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 146
BLAST of evm.model.ctg152.4 vs. ExPASy TrEMBL
Match: A0A2K1ZVZ7|A0A2K1ZVZ7_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G030700 PE=4 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 5.483e-29 Identity = 64/103 (62.14%), Postives = 77/103 (74.76%), Query Frame = 0 Query: 48 KSCKSFCYISK-KRGEMIVKVSSDAEVV--DSDEPLSESDDEEY-FPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 146 KS C+ + +G M VK SD++ DS +P+SESDDEE L+K+PLDSKLQLKLEHKM+MK+ KKIRLR KKL RKR MRK G+WPPSK+NKLKNV Sbjct: 39 KSFDGICFSTPVGKGLMTVKALSDSKGTSPDSGQPVSESDDEEEDVVLDKIPLDSKLQLKLEHKMKMKLGKKIRLRSKKLDRKRGMRKRGQWPPSKVNKLKNV 141
BLAST of evm.model.ctg152.4 vs. ExPASy TrEMBL
Match: A0A8X7ZHU2|A0A8X7ZHU2_POPTO (Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_024650 PE=4 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.182e-28 Identity = 70/123 (56.91%), Postives = 82/123 (66.67%), Query Frame = 0 Query: 39 MKSMGHHHLKSC--------KSFCYIS----KKRGEMIVKVSSDAEVV--DSDEPLSESDDEEY-FPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 146 +KSM + +C KSF I +G M VK SD++ DS +P+SESDDEE L+K+PLDSKLQLKLEHKM+MK KKIRLRRKKL RKR MRK G+WPPSK NKLKNV Sbjct: 52 LKSMDWYWFSACRLPIGVLSKSFDGICLSTPVGKGLMTVKALSDSKGTGPDSWQPVSESDDEEEDVVLDKIPLDSKLQLKLEHKMKMKFGKKIRLRRKKLDRKRGMRKRGKWPPSKANKLKNV 174
BLAST of evm.model.ctg152.4 vs. ExPASy TrEMBL
Match: A0A8T2YPC6|A0A8T2YPC6_POPDE (50S ribosomal protein 5 OS=Populus deltoides OX=3696 GN=H0E87_013557 PE=4 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 2.136e-28 Identity = 61/90 (67.78%), Postives = 72/90 (80.00%), Query Frame = 0 Query: 60 RGEMIVKVSSDAEVV--DSDEPLSESDDEEY-FPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 146 +G M VK SD++ DS +P+SESDDEE L+K+PLDSKLQLKLEHKM+MK+ KKIRLR KKL RKR MRK G+WPPSK+NKLKNV Sbjct: 52 KGLMTVKALSDSKGTSPDSGQPVSESDDEEEDVVLDKIPLDSKLQLKLEHKMKMKLGKKIRLRSKKLDRKRGMRKRGQWPPSKVNKLKNV 141
BLAST of evm.model.ctg152.4 vs. ExPASy TrEMBL
Match: A0A8T2YNK4|A0A8T2YNK4_POPDE (50S ribosomal protein 5 OS=Populus deltoides OX=3696 GN=H0E87_013557 PE=4 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 3.047e-28 Identity = 61/90 (67.78%), Postives = 72/90 (80.00%), Query Frame = 0 Query: 60 RGEMIVKVSSDAEVV--DSDEPLSESDDEEY-FPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 146 +G M VK SD++ DS +P+SESDDEE L+K+PLDSKLQLKLEHKM+MK+ KKIRLR KKL RKR MRK G+WPPSK+NKLKNV Sbjct: 31 KGLMTVKALSDSKGTSPDSGQPVSESDDEEEDVVLDKIPLDSKLQLKLEHKMKMKLGKKIRLRSKKLDRKRGMRKRGQWPPSKVNKLKNV 120
BLAST of evm.model.ctg152.4 vs. ExPASy TrEMBL
Match: A0A6M2ESK1|A0A6M2ESK1_9ROSI (Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 6.199e-28 Identity = 62/90 (68.89%), Postives = 71/90 (78.89%), Query Frame = 0 Query: 60 RGEMIVKVSSDAEVV--DSDEPLSESDDEEY-FPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 146 +G + VK SD++ DS +PLSESDDEE L+K+PLDSKLQLKLEHKM+MK KKIRLRRKKL RKR MRK G+WPPSK NKLKNV Sbjct: 52 KGLITVKALSDSKGTGPDSWQPLSESDDEEEDVVLDKIPLDSKLQLKLEHKMKMKFGKKIRLRRKKLDRKRGMRKRGKWPPSKANKLKNV 141
BLAST of evm.model.ctg152.4 vs. ExPASy TrEMBL
Match: A0A2K1ZVX1|A0A2K1ZVX1_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G028500 PE=4 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 7.539e-28 Identity = 61/90 (67.78%), Postives = 72/90 (80.00%), Query Frame = 0 Query: 60 RGEMIVKVSSDAEVV--DSDEPLSESDDEEY-FPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 146 +G M VK SD++ DS +P+SESDDEE L+K+PLDSKLQLKLEHKM+MK+ KKIRLR KKL RKR MRK G+WPPSK+NKLKNV Sbjct: 52 KGLMKVKALSDSKGTSPDSGQPVSESDDEEEDVVLDKIPLDSKLQLKLEHKMKMKLGKKIRLRSKKLDRKRGMRKRGQWPPSKVNKLKNV 141
BLAST of evm.model.ctg152.4 vs. ExPASy TrEMBL
Match: A0A8X7ZNG7|A0A8X7ZNG7_POPTO (Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_022463 PE=4 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 8.133e-28 Identity = 69/123 (56.10%), Postives = 82/123 (66.67%), Query Frame = 0 Query: 39 MKSMGHHHLKSC--------KSFCYIS----KKRGEMIVKVSSDAEVV--DSDEPLSESDDEEY-FPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 146 +KSM + +C KSF I +G M VK SD++ DS +P+SES+DEE L+K+PLDSKLQLKLEHKM+MK KKIRLRRKKL RKR MRK G+WPPSK NKLKNV Sbjct: 52 LKSMDWYWFSACRLPIGVLSKSFDGICLSTPVGKGLMTVKALSDSKGTGPDSWQPVSESNDEEEDVVLDKIPLDSKLQLKLEHKMKMKFGKKIRLRRKKLDRKRGMRKRGKWPPSKANKLKNV 174
BLAST of evm.model.ctg152.4 vs. ExPASy Swiss-Prot
Match: PSRP5_SPIOL (Large ribosomal subunit protein cL37 alpha OS=Spinacia oleracea OX=3562 GN=PSRP5 PE=1 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 3.574e-20 Identity = 48/92 (52.17%), Postives = 67/92 (72.83%), Query Frame = 0 Query: 55 YISKKRGEMIVKVSSDAEVVDSDEPLSESDDEEYFPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 146 I++KRG ++ VS+ AE ++ +E ++ LPL+SKLQLKLE K++MK++KKIRLRR +L+RKR++RK G WPPSKM KLKNV Sbjct: 51 VIAQKRGTVVAMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLMRKRKLRKRGAWPPSKMKKLKNV 142
BLAST of evm.model.ctg152.4 vs. ExPASy Swiss-Prot
Match: PSRP5_PEA (Large ribosomal subunit protein cL37 OS=Pisum sativum OX=3888 GN=PSRP5 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.560e-18 Identity = 48/122 (39.34%), Postives = 76/122 (62.30%), Query Frame = 0 Query: 30 TASPIPRLHMKSMGHHHLKSCKSFCYISKKRGEMIVKVSS-----DAEVVDSDEPLSESDDEEYFPLEKLPLDSKLQLKLEHKMRMKISKKIRLRRKKLVRKRRMRKTGRWPPSKMNKLKNV 146 TA+PI R+ + + + LK + I +K + + ++S D+ V D E + + ++KLPL+SKL+ + E ++MK++KKIRL+RK+LV+KRR+RK G WPPSKM KL+ V Sbjct: 25 TANPISRVRI-GLPTNCLKGFRILTPIVQKPRKNSIFIASAAAGADSNVADGVEESESKKESDVVSVDKLPLESKLKEREERMLKMKLAKKIRLKRKRLVQKRRLRKKGNWPPSKMKKLEGV 145 The following BLAST results are available for this feature:
BLAST of evm.model.ctg152.4 vs. ExPASy TrEMBL
Analysis Date: 2024-02-08 (Blastp of Citrus limon cv. Xiangshui v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of evm.model.ctg152.4 vs. ExPASy Swiss-Prot
Analysis Date: 2024-02-08 (Blastp of Citrus limon cv. Xiangshui v1.0 proteins vs UniProt Swissprot) Total hits: 2 Position : 0 Zoom : x 1
BLAST of evm.model.ctg152.4 vs. ExPASy Swiss-Prot
Analysis Date: 2024-02-08 (Blastp of Citrus limon cv. Xiangshui v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus limon cv. Xiangshui v1.0 proteins
Date Performed: 2024-02-08 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >evm.model.ctg152.4-Xiangshui_v1 ID=evm.model.ctg152.4-Xiangshui_v1; Name=evm.model.ctg152.4; organism=Citrus limon; type=mRNA; length=1109bpback to top protein sequence of evm.model.ctg152.4-Xiangshui_v1 >evm.model.ctg152.4-Xiangshui_v1 ID=evm.model.ctg152.4-Xiangshui_v1; Name=evm.model.ctg152.4-Xiangshui_v1; organism=Citrus limon; type=polypeptide; length=146bpback to top mRNA from alignment at Chr8:30908407..30911511- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=3105bp; location=Sequence derived from: Chr8:30908407..30911511- (Citrus limonback to top Coding sequence (CDS) from alignment at Chr8:30908407..30911511- >evm.model.ctg152.4-Xiangshui_v1 ID=evm.model.ctg152.4-Xiangshui_v1; Name=evm.model.ctg152.4; organism=Citrus limon; type=CDS; length=441bp; location=Sequence derived from: Chr8:30908407..30911511- (Citrus limonback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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