evm.model.ctg153.24.4
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of evm.model.ctg153.24.4 vs. ExPASy TrEMBL
Match: V4SXI1|V4SXI1_CITCL (BED-type domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10011114mg PE=4 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 8.213e-37 Identity = 69/71 (97.18%), Postives = 69/71 (97.18%), Query Frame = 0 Query: 3 QLFVLLRTEVSMAKELSYTWPNGCTHVPGGSLPSLSSGKSSDAEISTRPQQEINSNEAEEQNENQGKVMSL 73 QLFVLLRTEVSMAKELSYTWPNGCTHVPGGSLPSLSSGKSSDAEISTRPQQEIN NEAEEQNENQ KVMSL Sbjct: 123 QLFVLLRTEVSMAKELSYTWPNGCTHVPGGSLPSLSSGKSSDAEISTRPQQEININEAEEQNENQEKVMSL 193
BLAST of evm.model.ctg153.24.4 vs. ExPASy TrEMBL
Match: A0A2H5NU40|A0A2H5NU40_CITUN (BED-type domain-containing protein (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_076090 PE=4 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 4.710e-31 Identity = 65/91 (71.43%), Postives = 68/91 (74.73%), Query Frame = 0 Query: 3 QLFVLLRTEVSMAKELSYTWPNGCTHVPGGSLPSLSSGKSSDAEISTRPQQ--------------------EINSNEAEEQNENQGKVMSL 73 QLFVLLRTEV+MAKELSYTWPNGCTHVPGGSLPSLSSGKSSDAEISTRPQQ EIN NEA+EQNENQ +VM L Sbjct: 120 QLFVLLRTEVAMAKELSYTWPNGCTHVPGGSLPSLSSGKSSDAEISTRPQQEININEAEEQNENQEKVMSPEININEAKEQNENQERVMYL 210 The following BLAST results are available for this feature:
BLAST of evm.model.ctg153.24.4 vs. ExPASy TrEMBL
Analysis Date: 2024-02-08 (Blastp of Citrus limon cv. Xiangshui v1.0 proteins vs UniProt TrEMBL) Total hits: 2 Position : 0 Zoom : x 1
BLAST of evm.model.ctg153.24.4 vs. ExPASy TrEMBL
Analysis Date: 2024-02-08 (Blastp of Citrus limon cv. Xiangshui v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of evm.model.ctg153.24.4 vs. ExPASy TrEMBL
Analysis Date: 2024-02-08 (Blastp of Citrus limon cv. Xiangshui v1.0 proteins vs Araport11) Total hits: 0 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >evm.model.ctg153.24.4-Xiangshui_v1 ID=evm.model.ctg153.24.4-Xiangshui_v1; Name=evm.model.ctg153.24.4; organism=Citrus limon; type=mRNA; length=715bpback to top protein sequence of evm.model.ctg153.24.4-Xiangshui_v1 >evm.model.ctg153.24.4-Xiangshui_v1 ID=evm.model.ctg153.24.4-Xiangshui_v1; Name=evm.model.ctg153.24.4-Xiangshui_v1; organism=Citrus limon; type=polypeptide; length=103bpback to top mRNA from alignment at Chr8:31200779..31201947+ Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=1169bp; location=Sequence derived from: Chr8:31200779..31201947+ (Citrus limonback to top Coding sequence (CDS) from alignment at Chr8:31200779..31201947+ >evm.model.ctg153.24.4-Xiangshui_v1 ID=evm.model.ctg153.24.4-Xiangshui_v1; Name=evm.model.ctg153.24.4; organism=Citrus limon; type=CDS; length=312bp; location=Sequence derived from: Chr8:31200779..31201947+ (Citrus limonback to top |