evm.model.ctg153.4
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of evm.model.ctg153.4 vs. ExPASy TrEMBL
Match: V4SSM9|V4SSM9_CITCL (50S ribosomal protein 5, chloroplastic OS=Citrus clementina OX=85681 GN=CICLE_v10013047mg PE=4 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 3.811e-94 Identity = 142/146 (97.26%), Postives = 143/146 (97.95%), Query Frame = 0 Query: 1 MALLVSYNPLMSLPSPSSSSALSVTACPVSRLHFKAIESHPKSSNGVWSCTPLVASKRGAVIVKASSDIDRTAPTDGGEPPSDSTKEVVPVDKLPLESKTQERLEQKMRMKLAKKIRLRRKRLVRKRRMRKKGRWPPSKMKKLKNV 146 MALLVSYNPLMSLP PSSSSAL+V ACPVSRLHFKAIESHPKSSNGVWSCTPLVASKRGAVIVKASSDID TAPTDGGEPPSDSTKEVVPVDKLPLESKTQERLEQKMRMKLAKKIRLRRKRLVRKRRMRKKGRWPPSKMKKLKNV Sbjct: 1 MALLVSYNPLMSLP-PSSSSALAVAACPVSRLHFKAIESHPKSSNGVWSCTPLVASKRGAVIVKASSDIDGTAPTDGGEPPSDSTKEVVPVDKLPLESKTQERLEQKMRMKLAKKIRLRRKRLVRKRRMRKKGRWPPSKMKKLKNV 145
BLAST of evm.model.ctg153.4 vs. ExPASy TrEMBL
Match: A0A067EU38|A0A067EU38_CITSI (50S ribosomal protein 5, chloroplastic OS=Citrus sinensis OX=2711 GN=CISIN_1g032202mg PE=4 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 3.811e-94 Identity = 142/146 (97.26%), Postives = 143/146 (97.95%), Query Frame = 0 Query: 1 MALLVSYNPLMSLPSPSSSSALSVTACPVSRLHFKAIESHPKSSNGVWSCTPLVASKRGAVIVKASSDIDRTAPTDGGEPPSDSTKEVVPVDKLPLESKTQERLEQKMRMKLAKKIRLRRKRLVRKRRMRKKGRWPPSKMKKLKNV 146 MALLVSYNPLMSLP PSSSSAL+V ACPVSRLHFKAIESHPKSSNGVWSCTPLVASKRGAVIVKASSDID TAPTDGGEPPSDSTKEVVPVDKLPLESKTQERLEQKMRMKLAKKIRLRRKRLVRKRRMRKKGRWPPSKMKKLKNV Sbjct: 1 MALLVSYNPLMSLP-PSSSSALAVAACPVSRLHFKAIESHPKSSNGVWSCTPLVASKRGAVIVKASSDIDGTAPTDGGEPPSDSTKEVVPVDKLPLESKTQERLEQKMRMKLAKKIRLRRKRLVRKRRMRKKGRWPPSKMKKLKNV 145
BLAST of evm.model.ctg153.4 vs. ExPASy TrEMBL
Match: A0A2H5N0M6|A0A2H5N0M6_CITUN (50S ribosomal protein 5, chloroplastic OS=Citrus unshiu OX=55188 GN=CUMW_007370 PE=4 SV=1) HSP 1 Score: 210.305 bits (534), Expect = 2.558e-67 Identity = 139/146 (95.21%), Postives = 141/146 (96.58%), Query Frame = 0 Query: 1 MALLVSYNPLMSLPSPSSSSALSVTACPVSRLHFKAIESHPKSSNGVWSCTPLVASKRGAVIVKASSDIDRTAPTDGGEPPSDSTKEVVPVDKLPLESKTQERLEQKMRMKLAKKIRLRRKRLVRKRRMRKKGRWPPSKMKKLKNV 146 MALLVSYNPLMSLP SSSSAL+V ACPVSRLHFKAIESHPKSSNGVWSCTPLVASKRGAVIVKASSDID TAPTDGGEPPSDSTKEVVP+DKLPLESKTQE LEQKMRMKLAKKIRLRRKRLVRKRRMRKKGRWPPSKMKKLKNV Sbjct: 1 MALLVSYNPLMSLPP-SSSSALAVAACPVSRLHFKAIESHPKSSNGVWSCTPLVASKRGAVIVKASSDIDGTAPTDGGEPPSDSTKEVVPIDKLPLESKTQEILEQKMRMKLAKKIRLRRKRLVRKRRMRKKGRWPPSKMKKLKNV 145
BLAST of evm.model.ctg153.4 vs. ExPASy TrEMBL
Match: A0A5B7BJM5|A0A5B7BJM5_DAVIN (50S ribosomal protein 5 OS=Davidia involucrata OX=16924 GN=Din_037442 PE=4 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 2.609e-42 Identity = 94/146 (64.38%), Postives = 109/146 (74.66%), Query Frame = 0 Query: 1 MALLVSYNPLMSLPSPSSSSALSVTACPVSRLHFKAIESHPKSSNGVWSCTPLVASKRGAVIVKASSDIDRTAPTDGGEPPSDSTKEVVPVDKLPLESKTQERLEQKMRMKLAKKIRLRRKRLVRKRRMRKKGRWPPSKMKKLKNV 146 MALL+ PL S S SS SAL++T P SRLH +I PKSSN + TP + +RGAVIV+ASS +D T DGGEP S+S +E VP+ LPLESK Q +LEQKMRMKLAKKIRLRRK+LVRKR +RKKGRWPPSKMKK KNV Sbjct: 6 MALLLVSTPLFSASSSSSVSALAITVNPFSRLHKASIGLRPKSSNALQIHTPFILKERGAVIVRASSSMDGTG-LDGGEPSSESEEENVPIGNLPLESKLQLKLEQKMRMKLAKKIRLRRKKLVRKRHLRKKGRWPPSKMKKNKNV 150
BLAST of evm.model.ctg153.4 vs. ExPASy TrEMBL
Match: A0A0A0L3F4|A0A0A0L3F4_CUCSA (50S ribosomal protein 5, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_4G419580 PE=4 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 2.087e-39 Identity = 84/151 (55.63%), Postives = 99/151 (65.56%), Query Frame = 0 Query: 2 ALLVSYNPLMSL----PSPSSSSALSVTACPVSRLHFKAIESHPKSSNGVWSCTPLVASKRGAVIVKASSDIDRTAPTDGG--EPPSDSTKEVVPVDKLPLESKTQERLEQKMRMKLAKKIRLRRKRLVRKRRMRKKGRWPPSKMKKLKNV 146 + L+S NPL + SPS S +A P S L K I PK NGV +++VKA+S+ D T TD +P +++ KE VPVDKLPLESK QERLEQK RMKLAKKIRLRRKRLV+KR +RKKGRWPPSKMKKLKNV Sbjct: 3 SFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 153
BLAST of evm.model.ctg153.4 vs. ExPASy TrEMBL
Match: A0A6J1HSA0|A0A6J1HSA0_CUCMA (50S ribosomal protein 5, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466122 PE=4 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 4.502e-39 Identity = 88/151 (58.28%), Postives = 99/151 (65.56%), Query Frame = 0 Query: 1 MALLVSYNPL-MSLPS---PSSSSALSV-TACPVSRLHFKAIESHPKSSNGVWSCTPLVASKRGAVIVKASSDIDRTAPTDGGEPPSDSTKEVVPVDKLPLESKTQERLEQKMRMKLAKKIRLRRKRLVRKRRMRKKGRWPPSKMKKLKNV 146 MALL+ NP+ SLPS P S S + +A S L K PK NGV P + R ++IVKA+S+ID T TD EP VPVDKLPLESK QER EQK RMKLAKKIRLRRKRLV+KR +RKKGRWPPSKMKKLKNV Sbjct: 1 MALLLCSNPVSTSLPSSLFPLSPSCFPMNSAAQCSMLFMKPNVFQPKHFNGVGLRNPSLIENRSSLIVKAASEIDATVETDSSEP----QPPAVPVDKLPLESKLQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 147
BLAST of evm.model.ctg153.4 vs. ExPASy TrEMBL
Match: A0A836YFX0|A0A836YFX0_9ROSI (Ribosomal protein PsCL18 OS=Salix suchowensis OX=1278906 GN=IMY05_001G0027500 PE=4 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 7.357e-38 Identity = 97/148 (65.54%), Postives = 113/148 (76.35%), Query Frame = 0 Query: 1 MALLVSYNPLMSLPS--PSSSSALSVTACPVSRLHFKAIESHPKSSNGVWSCTPLVASKRGAVIVKASSDIDRTAPTDGGEPPSDSTKEVVPVDKLPLESKTQERLEQKMRMKLAKKIRLRRKRLVRKRRMRKKGRWPPSKMKKLKNV 146 M+LL+ +NPL SL S P S + A PVSRLH KA E K+ NGV P+ ++ GAV+V+ASSDID TAPT+ EPP +S +EVV VDKLPLESK QER EQK++MKLA+KIRLRR RLVRKRRMRKKGRWPPSKMKKLKNV Sbjct: 1 MSLLL-FNPLTSLSSLPPFQSPTSAFIATPVSRLHVKAFELKFKTWNGVRLQNPIRGNRIGAVVVRASSDIDGTAPTETREPPVESKEEVVSVDKLPLESKLQEREEQKLKMKLARKIRLRRNRLVRKRRMRKKGRWPPSKMKKLKNV 147
BLAST of evm.model.ctg153.4 vs. ExPASy TrEMBL
Match: A0A836E343|A0A836E343_9ROSI (Ribosomal protein PsCL18 OS=Salix suchowensis OX=1278906 GN=IMY05_001G0025000 PE=4 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 8.953e-38 Identity = 98/148 (66.22%), Postives = 113/148 (76.35%), Query Frame = 0 Query: 1 MALLVSYNPLMSLPS--PSSSSALSVTACPVSRLHFKAIESHPKSSNGVWSCTPLVASKRGAVIVKASSDIDRTAPTDGGEPPSDSTKEVVPVDKLPLESKTQERLEQKMRMKLAKKIRLRRKRLVRKRRMRKKGRWPPSKMKKLKNV 146 M+LL+ +NPL S S P SS + A PVSRLH KA E K+ NGV P+ ++ GAV+V+ASSDID TAPT+ EPP +S +EVV VDKLPLESK QER EQKM+MKLA+KIRLRR RLVRKRRMRKKGRWPPSKMKKLKNV Sbjct: 1 MSLLL-FNPLTSRSSLPPFSSPTPAFIATPVSRLHVKAFELKFKTWNGVRFQNPIRGNRIGAVVVRASSDIDGTAPTETREPPVESKEEVVSVDKLPLESKLQEREEQKMKMKLARKIRLRRNRLVRKRRMRKKGRWPPSKMKKLKNV 147
BLAST of evm.model.ctg153.4 vs. ExPASy TrEMBL
Match: A0A6A4LI31|A0A6A4LI31_9ERIC (50S ribosomal protein 5, chloroplastic (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_12241 PE=4 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 9.200e-38 Identity = 77/124 (62.10%), Postives = 91/124 (73.39%), Query Frame = 0 Query: 24 VTACPVSRLHFKAIESHPKSSNGVWSCTPLVASKRGAVIVKASSDIDRTAPTDGGEPP-SDSTKEVVPVDKLPLESKTQERLEQKMRMKLAKKIRLRRKRLVRKRRMRKKGRWPPSKMKKLKNV 146 V+A P RL HPKS G+ + T + +RGA+IVKASS+ D T+P DG EPP S+ K +PV+ LPLESK Q LEQ++RMKLAKKIRLRRKRLV KRR+RKKGRWPPSKMKK KNV Sbjct: 27 VSAYPFYRLRKNFTSLHPKSVCGLQTKTSSIIKERGALIVKASSEADGTSP-DGVEPPPSEGEKTDIPVEDLPLESKQQLLLEQRLRMKLAKKIRLRRKRLVMKRRLRKKGRWPPSKMKKNKNV 149
BLAST of evm.model.ctg153.4 vs. ExPASy TrEMBL
Match: A0A5C7INT0|A0A5C7INT0_9ROSI (50S ribosomal protein 5, chloroplastic OS=Acer yangbiense OX=1000413 GN=EZV62_005061 PE=4 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 1.640e-37 Identity = 91/115 (79.13%), Postives = 100/115 (86.96%), Query Frame = 0 Query: 33 HFKAIESHPKSSNGVWSCTPLVASKRGAVIVKASSDI-DRTAPTDGGEPPSDSTKEVVPVDKLPLESKTQERLEQKMRMKLAKKIRLRRKRLVRKRRMRKKGRWPPSKMKKLKNV 146 HFKAI K GV + TPL A++RGAV+VKASSDI D TAPTDGGEPPS+S KEVV VDKLPLESK QER++QKMRMKLAKKIRLRRKRLVRKR++RKKGRWPPSKMKKLKNV Sbjct: 138 HFKAIGPRSKYPYGVQNYTPLTANRRGAVVVKASSDIVDGTAPTDGGEPPSESNKEVVAVDKLPLESKLQERMDQKMRMKLAKKIRLRRKRLVRKRKLRKKGRWPPSKMKKLKNV 252 HSP 2 Score: 94.3597 bits (233), Expect = 1.215e-20 Identity = 58/108 (53.70%), Postives = 71/108 (65.74%), Query Frame = 0 Query: 23 SVTACPVSRLHFKAIESHPKSSNGVWSCTPLVASKRGAVIVKASSDIDRTAPTDGGEPPSDSTKEV-VPVDKLPLESKTQERLEQKMRMKLAKKIRLRRKRLVRKRRM 129 ++TA P+SRLH K I+ KS W ++ +KR + VKA SD T DGGE S+S EV P DKLPL+SK Q +LEQKMRMK +KKIRLRRK+LV KRR Sbjct: 24 AITASPISRLHMKPIDPVLKS----WDRVGVITNKRCSRTVKAFSD---TGGPDGGESQSESDDEVDFPFDKLPLDSKLQLKLEQKMRMKSSKKIRLRRKKLVHKRRF 124
BLAST of evm.model.ctg153.4 vs. ExPASy Swiss-Prot
Match: PSRP5_PEA (Large ribosomal subunit protein cL37 OS=Pisum sativum OX=3888 GN=PSRP5 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 6.722e-26 Identity = 64/124 (51.61%), Postives = 78/124 (62.90%), Query Frame = 0 Query: 25 TACPVSRLHFKAIESHPKSSNGVWSCTPLVASKRGAVIVKASSDIDRTAPTDGGEPPSDSTKE--VVPVDKLPLESKTQERLEQKMRMKLAKKIRLRRKRLVRKRRMRKKGRWPPSKMKKLKNV 146 TA P+SR+ I G TP+V R I AS+ + G S+S KE VV VDKLPLESK +ER E+ ++MKLAKKIRL+RKRLV+KRR+RKKG WPPSKMKKL+ V Sbjct: 25 TANPISRVR---IGLPTNCLKGFRILTPIVQKPRKNSIFIASAAAGADSNVADGVEESESKKESDVVSVDKLPLESKLKEREERMLKMKLAKKIRLKRKRLVQKRRLRKKGNWPPSKMKKLEGV 145
BLAST of evm.model.ctg153.4 vs. ExPASy Swiss-Prot
Match: PSRP5_SPIOL (Large ribosomal subunit protein cL37 alpha OS=Spinacia oleracea OX=3562 GN=PSRP5 PE=1 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 9.647e-23 Identity = 59/129 (45.74%), Postives = 85/129 (65.89%), Query Frame = 0 Query: 18 SSSALSVTACPVSRLHFKAIESHPKSSNGVWSCTPLVASKRGAVIVKASSDIDRTAPTDGGEPPSDSTKEVVPVDKLPLESKTQERLEQKMRMKLAKKIRLRRKRLVRKRRMRKKGRWPPSKMKKLKNV 146 +S A+S ++ P+ +L ++ P + + P++A KRG V+ S+ + TA DG + + + V LPLESK Q +LEQK++MK+AKKIRLRR RL+RKR++RK+G WPPSKMKKLKNV Sbjct: 17 TSIAVSSSSFPI-KLQNVSVALLPSFGQRLVAHGPVIAQKRGTVVAMVSAAAEETAGEDGDQSKVEEAN--ISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLMRKRKLRKRGAWPPSKMKKLKNV 142
BLAST of evm.model.ctg153.4 vs. ExPASy Swiss-Prot
Match: PSRP5_ARATH (Large ribosomal subunit protein cL37 OS=Arabidopsis thaliana OX=3702 GN=PSRP5 PE=1 SV=1) HSP 1 Score: 50.447 bits (119), Expect = 2.083e-7 Identity = 67/125 (53.60%), Postives = 80/125 (64.00%), Query Frame = 0 Query: 26 ACPVSRLHFKAIESHPKSSNGVWSCTPLVASKRGAVIVKAS-SDIDRTAPTDGGEPPSDSTKEVVPVDKLPLESK---TQERLEQKMRMKLAKKIRLRRKRLVRKRRMRKKGRWPPSKMKKLKNV 146 A PV L A+ES + S +S S G ++VKA+ S +D P EP + VPVDKLPLESK + LE +++MKLAKKIRLRRKRLVRKR+MRKKGRWPPSKMKK KNV Sbjct: 30 ASPVLSLKPNAVESKNRVSLSAYSLN----SSHGRIVVKAAASGVDGAEPESKEEP--KTVVAAVPVDKLPLESKEAKEKLLLELRLKMKLAKKIRLRRKRLVRKRKMRKKGRWPPSKMKKNKNV 148
BLAST of evm.model.ctg153.4 vs. Araport11
Match: | (Symbols: PSRP5 | plastid-specific 50S ribosomal protein 5 | chr3:21069558-21070257 REVERSE LENGTH=148) HSP 1 Score: 50.447 bits (119), Expect = 2.146e-8 Identity = 67/125 (53.60%), Postives = 80/125 (64.00%), Query Frame = 0 Query: 26 ACPVSRLHFKAIESHPKSSNGVWSCTPLVASKRGAVIVKAS-SDIDRTAPTDGGEPPSDSTKEVVPVDKLPLESK---TQERLEQKMRMKLAKKIRLRRKRLVRKRRMRKKGRWPPSKMKKLKNV 146 A PV L A+ES + S +S S G ++VKA+ S +D P EP + VPVDKLPLESK + LE +++MKLAKKIRLRRKRLVRKR+MRKKGRWPPSKMKK KNV Sbjct: 30 ASPVLSLKPNAVESKNRVSLSAYSLN----SSHGRIVVKAAASGVDGAEPESKEEP--KTVVAAVPVDKLPLESKEAKEKLLLELRLKMKLAKKIRLRRKRLVRKRKMRKKGRWPPSKMKKNKNV 148 The following BLAST results are available for this feature:
BLAST of evm.model.ctg153.4 vs. ExPASy TrEMBL
Analysis Date: 2024-02-08 (Blastp of Citrus limon cv. Xiangshui v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of evm.model.ctg153.4 vs. ExPASy Swiss-Prot
Analysis Date: 2024-02-08 (Blastp of Citrus limon cv. Xiangshui v1.0 proteins vs UniProt Swissprot) Total hits: 3 Position : 0 Zoom : x 1
BLAST of evm.model.ctg153.4 vs. Araport11
Analysis Date: 2024-02-08 (Blastp of Citrus limon cv. Xiangshui v1.0 proteins vs Araport11) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus limon cv. Xiangshui v1.0 proteins
Date Performed: 2024-02-08 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >evm.model.ctg153.4-Xiangshui_v1 ID=evm.model.ctg153.4-Xiangshui_v1; Name=evm.model.ctg153.4; organism=Citrus limon; type=mRNA; length=1029bpback to top protein sequence of evm.model.ctg153.4-Xiangshui_v1 >evm.model.ctg153.4-Xiangshui_v1 ID=evm.model.ctg153.4-Xiangshui_v1; Name=evm.model.ctg153.4-Xiangshui_v1; organism=Citrus limon; type=polypeptide; length=146bpback to top mRNA from alignment at Chr8:31065496..31067842+ Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2347bp; location=Sequence derived from: Chr8:31065496..31067842+ (Citrus limonback to top Coding sequence (CDS) from alignment at Chr8:31065496..31067842+ >evm.model.ctg153.4-Xiangshui_v1 ID=evm.model.ctg153.4-Xiangshui_v1; Name=evm.model.ctg153.4; organism=Citrus limon; type=CDS; length=441bp; location=Sequence derived from: Chr8:31065496..31067842+ (Citrus limonback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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