evm.model.ctg65.32
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of evm.model.ctg65.32 vs. ExPASy TrEMBL
Match: V4UDV3|V4UDV3_CITCL (Protein BIC1 OS=Citrus clementina OX=85681 GN=CICLE_v10029406mg PE=4 SV=1) HSP 1 Score: 332.028 bits (850), Expect = 7.146e-115 Identity = 163/168 (97.02%), Postives = 165/168 (98.21%), Query Frame = 0 Query: 1 MKHPHFSSSSSLTKEEDQTNNMNDNVIKNSSPSSSVRRIHAEKNKANGTSDLCLHGSILESREMHAKDENNNEDLLHKDQGG--GGGGGGRERLKRYREEVAGRVLIPDTWGQEGLLKNWIDCSAFEALMVPNKIASARKALVADNRGSPRASNTTTSLQQLRIESRC 166
MKHPHFSSSSSLTKEEDQTNNMNDNVIKNSSPSSSVRRIHAEKNKANGTSDLCLHGSILESREMH KDEN+NEDLLHKDQGG GGGGGGRERLKR+REEVAGRVLIPDTWGQEGLLKNWIDCSAFEALMVPNKIASARKALVADNRGSPRASNTTTSLQQLRIESRC
Sbjct: 1 MKHPHFSSSSSLTKEEDQTNNMNDNVIKNSSPSSSVRRIHAEKNKANGTSDLCLHGSILESREMHVKDENSNEDLLHKDQGGGGGGGGGGRERLKRHREEVAGRVLIPDTWGQEGLLKNWIDCSAFEALMVPNKIASARKALVADNRGSPRASNTTTSLQQLRIESRC 168
BLAST of evm.model.ctg65.32 vs. ExPASy TrEMBL
Match: A0A067F3L1|A0A067F3L1_CITSI (Protein BIC1 OS=Citrus sinensis OX=2711 GN=CISIN_1g030990mg PE=4 SV=1) HSP 1 Score: 332.028 bits (850), Expect = 7.146e-115 Identity = 163/168 (97.02%), Postives = 165/168 (98.21%), Query Frame = 0 Query: 1 MKHPHFSSSSSLTKEEDQTNNMNDNVIKNSSPSSSVRRIHAEKNKANGTSDLCLHGSILESREMHAKDENNNEDLLHKDQGG--GGGGGGRERLKRYREEVAGRVLIPDTWGQEGLLKNWIDCSAFEALMVPNKIASARKALVADNRGSPRASNTTTSLQQLRIESRC 166
MKHPHFSSSSSLTKEEDQTNNMNDNVIKNSSPSSSVRRIHAEKNKANGTSDLCLHGSILESREMH KDEN+NEDLLHKDQGG GGGGGGRERLKR+REEVAGRVLIPDTWGQEGLLKNWIDCSAFEALMVPNKIASARKALVADNRGSPRASNTTTSLQQLRIESRC
Sbjct: 1 MKHPHFSSSSSLTKEEDQTNNMNDNVIKNSSPSSSVRRIHAEKNKANGTSDLCLHGSILESREMHVKDENSNEDLLHKDQGGGGGGGGGGRERLKRHREEVAGRVLIPDTWGQEGLLKNWIDCSAFEALMVPNKIASARKALVADNRGSPRASNTTTSLQQLRIESRC 168
BLAST of evm.model.ctg65.32 vs. ExPASy TrEMBL
Match: A0A2H5QUH4|A0A2H5QUH4_CITUN (Protein BIC1 OS=Citrus unshiu OX=55188 GN=CUMW_262860 PE=4 SV=1) HSP 1 Score: 322.013 bits (824), Expect = 5.292e-111 Identity = 159/166 (95.78%), Postives = 160/166 (96.39%), Query Frame = 0 Query: 1 MKHPHFSSSSSLTKEEDQTNNMNDNVIKNSSPSSSVRRIHAEKNKANGTSDLCLHGSILESREMHAKDENNNEDLLHKDQGGGGGGGGRERLKRYREEVAGRVLIPDTWGQEGLLKNWIDCSAFEALMVPNKIASARKALVADNRGSPRASNTTTSLQQLRIESRC 166
MKHPHFSSSSSLTKEEDQTNNMNDNVIKNSSPSSSVRRIHAEKNKANGTSDLCLHGSILESREMH KDENNNEDLLHKDQ GGGGRERLKR+REEVAGRVLIPDTWGQEGLLKNWIDCSAFEALMVPNKIASARKALVADNRGS RASNTTTSLQQLRIESRC
Sbjct: 1 MKHPHFSSSSSLTKEEDQTNNMNDNVIKNSSPSSSVRRIHAEKNKANGTSDLCLHGSILESREMHVKDENNNEDLLHKDQ----GGGGRERLKRHREEVAGRVLIPDTWGQEGLLKNWIDCSAFEALMVPNKIASARKALVADNRGSTRASNTTTSLQQLRIESRC 162
BLAST of evm.model.ctg65.32 vs. ExPASy TrEMBL
Match: A0A5C7IWJ6|A0A5C7IWJ6_9ROSI (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_002192 PE=4 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 5.503e-30 Identity = 58/81 (71.60%), Postives = 66/81 (81.48%), Query Frame = 0 Query: 87 GGRERLKRYREEVAGRVLIPDTWGQEGLLKNWIDCSAFEALMVPNKIASARKALVAD-NRGSPRASNTTTSLQQLRIESRC 166
GGRERLKR+REEVAG V IPD WGQE +LK+WIDCS+FEAL+VPNKIASARKALVA + G RA+ + QLRIESRC
Sbjct: 62 GGRERLKRHREEVAGHVSIPDKWGQEEMLKDWIDCSSFEALLVPNKIASARKALVATADHGRNRAATS----HQLRIESRC 138
BLAST of evm.model.ctg65.32 vs. ExPASy TrEMBL
Match: A0A5C7IXG3|A0A5C7IXG3_9ROSI (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_002193 PE=4 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 7.707e-30 Identity = 73/143 (51.05%), Postives = 92/143 (64.34%), Query Frame = 0 Query: 31 SPSSSVRRI-HAEKNK-----ANGTSDLCLHGSILESREMHAKDENNNEDLLHKDQGGGGGGGGRERLKRYREEVAGRVLIPDTWGQEGLLKNWIDCSAFEALMVPNKIASARKALVAD-NRGSPRASNTTTSLQQLRIESRC 166
S S +V+R+ HA K ANG+ H +L +++ KD +++ D+ GGRERLKR+REEVAG V IPD WGQE +LK WIDCS+FEAL+VPNKIASARKALVA + G RA+ + QLRIESRC
Sbjct: 7 SHSQAVQRVNHAFSRKTVNKLANGSEQ---HRFMLHGGDVNMKDTVSDQ----PDELLVPSSGGRERLKRHREEVAGHVSIPDKWGQEEMLKEWIDCSSFEALLVPNKIASARKALVATADHGRNRAATS----HQLRIESRC 138
BLAST of evm.model.ctg65.32 vs. ExPASy TrEMBL
Match: A9PFK9|A9PFK9_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 2.086e-29 Identity = 78/169 (46.15%), Postives = 96/169 (56.80%), Query Frame = 0 Query: 1 MKHPHFSSSSSLTKEEDQTNNMNDNVIKNSSPSSSVRRIHAEKNKANGTSDLCLHGSILESREMHAKD-ENNNEDLLHKDQGGGGGGGGRERLKRYREEVAGRVLIPDTWGQEGLLKNWIDCSAFEALMVPNKIASARKALVADNR--GSPRASNTTTSLQQLRIESRC 166
M+ HFSS KEED T N+ +N +S S+ + I A TS + H H D E +E LLHKD G RERLK++REEVAGRV+IPDTWGQE LK+WIDCSAF+ L+ PN I+SAR++LVA+ R SPR L I SRC
Sbjct: 1 MEGIHFSSK----KEEDPTINIGNNHSNIASTRSTSQNILAFSTDQASTSSVSPH---------HDGDCEAGHEALLHKDSG-------RERLKKHREEVAGRVMIPDTWGQEDSLKDWIDCSAFDELLAPNGISSARESLVAEGRKGSSPR----------LGIASRC 139
BLAST of evm.model.ctg65.32 vs. ExPASy TrEMBL
Match: A0A3N7FPZ8|A0A3N7FPZ8_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G163900 PE=4 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.005e-28 Identity = 73/152 (48.03%), Postives = 91/152 (59.87%), Query Frame = 0 Query: 1 MKHPHFSSSSSLTKEEDQTNNMNDNVIKNSSPSSSVRRIHAEKNKANGTSDLCLHGSILESREMHAKD-ENNNEDLLHKDQGGGGGGGGRERLKRYREEVAGRVLIPDTWGQEGLLKNWIDCSAFEALMVPNKIASARKALVADNR--GSPR 149
M+ HFSS KEED T N+ +N +S S+ + I A TS + H H D E +E LLHKD G RERLK++REEVAGRV+IPDTWGQE LK+WIDCSAF+ L+ PN I+SAR++LVA+ R SPR
Sbjct: 1 MEGIHFSSK----KEEDPTINIGNNHSNIASTRSTSQNILAFSTDQASTSSVSPH---------HDGDCEAGHEALLHKDSG-------RERLKKHREEVAGRVMIPDTWGQEDSLKDWIDCSAFDELLAPNGISSARESLVAEGRKGSSPR 132
BLAST of evm.model.ctg65.32 vs. ExPASy TrEMBL
Match: A0A8X7Z133|A0A8X7Z133_POPTO (Protein BIC1 OS=Populus tomentosa OX=118781 GN=POTOM_033763 PE=4 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.025e-26 Identity = 74/169 (43.79%), Postives = 93/169 (55.03%), Query Frame = 0 Query: 1 MKHPHFSSSSSLTKEEDQTNNMNDNVIKNSSPSSSVRRIHAEKNKANGTSDLCLHGSILESREMHAKD-ENNNEDLLHKDQGGGGGGGGRERLKRYREEVAGRVLIPDTWGQEGLLKNWIDCSAFEALMVPNKIASARKALVADNR--GSPRASNTTTSLQQLRIESRC 166
M+ HFSS KEED T N+ +N +S S+ + TS + H H D E +E LLHKD GRERLK++REEVAGR++IPDTWGQE LK+WIDCSAF+ L+ P I+SAR++LVA+ R SPR L I SRC
Sbjct: 1 MEGIHFSSK----KEEDPTINILNNHSNIASTRSTSQNTLGFSTDQASTSSVSPH---------HGGDCEAGHEALLHKD-------CGRERLKKHREEVAGRIMIPDTWGQENSLKDWIDCSAFDELLAPTGISSARESLVAEGRKGSSPR----------LGIASRC 139
BLAST of evm.model.ctg65.32 vs. ExPASy TrEMBL
Match: A0A4U5PMU2|A0A4U5PMU2_POPAL (Protein BIC1 OS=Populus alba OX=43335 GN=D5086_0000202290 PE=4 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.025e-26 Identity = 74/169 (43.79%), Postives = 93/169 (55.03%), Query Frame = 0 Query: 1 MKHPHFSSSSSLTKEEDQTNNMNDNVIKNSSPSSSVRRIHAEKNKANGTSDLCLHGSILESREMHAKD-ENNNEDLLHKDQGGGGGGGGRERLKRYREEVAGRVLIPDTWGQEGLLKNWIDCSAFEALMVPNKIASARKALVADNR--GSPRASNTTTSLQQLRIESRC 166
M+ HFSS KEED T N+ +N +S S+ + TS + H H D E +E LLHKD GRERLK++REEVAGR++IPDTWGQE LK+WIDCSAF+ L+ P I+SAR++LVA+ R SPR L I SRC
Sbjct: 1 MEGIHFSSK----KEEDPTINILNNHSNIASTRSTSQNTLGFSTDQASTSSVSPH---------HGGDCEAGHEALLHKD-------CGRERLKKHREEVAGRIMIPDTWGQENSLKDWIDCSAFDELLAPTGISSARESLVAEGRKGSSPR----------LGIASRC 139
BLAST of evm.model.ctg65.32 vs. ExPASy TrEMBL
Match: A0A8T2XY68|A0A8T2XY68_POPDE (Protein BIC1 OS=Populus deltoides OX=3696 GN=H0E87_016899 PE=4 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 3.065e-26 Identity = 69/151 (45.70%), Postives = 89/151 (58.94%), Query Frame = 0 Query: 1 MKHPHFSSSSSLTKEEDQTNNMNDNVIKNSSPSSSVRRIHAEKNKANGTSDLCLHGSILESREMHAKDENNNEDLLHKDQGGGGGGGGRERLKRYREEVAGRVLIPDTWGQEGLLKNWIDCSAFEALMVPNKIASARKALVADNR--GSPR 149
M+ HFSS KEED T ++ +N +S S+ + I A +S H E+ +E LLHKD G RERLK++REEVAGRV+IPDTWGQE LK+WIDCSAF+ L+ PN I+SAR++LVA+ R SPR
Sbjct: 1 MEGIHFSSK----KEEDPTIDIVNNHSNIASTRSTSQNIPAFSTDQAASSVSPHHDGDCEA---------GHEALLHKDSG-------RERLKKHREEVAGRVMIPDTWGQEDSLKDWIDCSAFDELLAPNGISSARESLVAEGRKGSSPR 131
BLAST of evm.model.ctg65.32 vs. ExPASy Swiss-Prot
Match: BIC1_ARATH (Protein BIC1 OS=Arabidopsis thaliana OX=3702 GN=BIC1 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 5.012e-21 Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 0 Query: 88 GRERLKRYREEVAGRVLIPDTWGQEGLLKNWIDCSAFEALMVPNKIASARKALVADNRGSPRAS 151
GRERLK++R E+AGRV IP+ WGQE LLK+WIDCS F+ +VP I+SAR ALV + R + AS
Sbjct: 66 GRERLKKHRREIAGRVWIPEIWGQEELLKDWIDCSTFDTCLVPAGISSARTALVEEARRAASAS 129
BLAST of evm.model.ctg65.32 vs. ExPASy Swiss-Prot
Match: BIC2_ARATH (Protein BIC2 OS=Arabidopsis thaliana OX=3702 GN=BIC2 PE=1 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 6.048e-21 Identity = 42/79 (53.16%), Postives = 56/79 (70.89%), Query Frame = 0 Query: 88 GRERLKRYREEVAGRVLIPDTWGQEGLLKNWIDCSAFEALMVPNKIASARKALVADNRGSPRASNTTTSLQQLRIESRC 166
GR+RLKR+REEVAG+V IPD+WG+EGLL W+D S F+A ++I SAR AL+AD+ A + Q+LR+ES C
Sbjct: 40 GRDRLKRHREEVAGKVPIPDSWGKEGLLMGWMDFSTFDAAFTSSQIVSARAALMADSGDDAGARGSRP--QRLRVESSC 116
BLAST of evm.model.ctg65.32 vs. Araport11
Match: | (Symbols: BIC1 | Blue-light Inhibitor of Cryptochromes 1 | chr3:19546446-19546868 REVERSE LENGTH=140) HSP 1 Score: 86.6557 bits (213), Expect = 5.214e-22 Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 0 Query: 88 GRERLKRYREEVAGRVLIPDTWGQEGLLKNWIDCSAFEALMVPNKIASARKALVADNRGSPRAS 151
GRERLK++R E+AGRV IP+ WGQE LLK+WIDCS F+ +VP I+SAR ALV + R + AS
Sbjct: 66 GRERLKKHRREIAGRVWIPEIWGQEELLKDWIDCSTFDTCLVPAGISSARTALVEEARRAASAS 129
BLAST of evm.model.ctg65.32 vs. Araport11
Match: | (Symbols: BIC2 | Blue-light Inhibitor of Cryptochromes 2 | chr3:16074228-16074578 REVERSE LENGTH=116) HSP 1 Score: 85.5001 bits (210), Expect = 6.299e-22 Identity = 42/79 (53.16%), Postives = 56/79 (70.89%), Query Frame = 0 Query: 88 GRERLKRYREEVAGRVLIPDTWGQEGLLKNWIDCSAFEALMVPNKIASARKALVADNRGSPRASNTTTSLQQLRIESRC 166
GR+RLKR+REEVAG+V IPD+WG+EGLL W+D S F+A ++I SAR AL+AD+ A + Q+LR+ES C
Sbjct: 40 GRDRLKRHREEVAGKVPIPDSWGKEGLLMGWMDFSTFDAAFTSSQIVSARAALMADSGDDAGARGSRP--QRLRVESSC 116 The following BLAST results are available for this feature:
BLAST of evm.model.ctg65.32 vs. ExPASy TrEMBL
Analysis Date: 2024-02-08 (Blastp of Citrus limon cv. Xiangshui v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of evm.model.ctg65.32 vs. ExPASy Swiss-Prot
Analysis Date: 2024-02-08 (Blastp of Citrus limon cv. Xiangshui v1.0 proteins vs UniProt Swissprot) Total hits: 2 Position : 0 Zoom : x 1
BLAST of evm.model.ctg65.32 vs. Araport11
Analysis Date: 2024-02-08 (Blastp of Citrus limon cv. Xiangshui v1.0 proteins vs Araport11) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Citrus limon cv. Xiangshui v1.0 proteins
Date Performed: 2024-02-08 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >evm.model.ctg65.32-Xiangshui_v1 ID=evm.model.ctg65.32-Xiangshui_v1; Name=evm.model.ctg65.32; organism=Citrus limon; type=mRNA; length=671bpback to top protein sequence of evm.model.ctg65.32-Xiangshui_v1 >evm.model.ctg65.32-Xiangshui_v1 ID=evm.model.ctg65.32-Xiangshui_v1; Name=evm.model.ctg65.32-Xiangshui_v1; organism=Citrus limon; type=polypeptide; length=166bpback to top mRNA from alignment at Chr3:31485117..31485787- Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=671bp; location=Sequence derived from: Chr3:31485117..31485787- (Citrus limonback to top Coding sequence (CDS) from alignment at Chr3:31485117..31485787- >evm.model.ctg65.32-Xiangshui_v1 ID=evm.model.ctg65.32-Xiangshui_v1; Name=evm.model.ctg65.32; organism=Citrus limon; type=CDS; length=501bp; location=Sequence derived from: Chr3:31485117..31485787- (Citrus limonback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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