gene-KPL71_018589-mRNA1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of gene-KPL71_018589-mRNA1 vs. DB:SwissProt
Match: ATL71_ARATH (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 3.047e-35 Identity = 70/109 (64.22%), Postives = 85/109 (77.98%), Query Frame = 2 Query: 542 DHNQSSIVIDV-GLDESTIKSYPKLPYSEAR----LQKKDSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRXXXXXXXXXXXXAEVVPLAAR 853 D ++V++V GL E IK +PKLPY EAR LQK+ ST +CCSICLADY+ DM+R+LPDC+HLFH CVDPWLRLHPTCPVCRTSPLP+P TP+A+VVP + R Sbjct: 84 DDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFSRR 192
BLAST of gene-KPL71_018589-mRNA1 vs. DB:SwissProt
Match: ATL70_ARATH (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 4.461e-30 Identity = 67/92 (72.83%), Postives = 79/92 (85.87%), Query Frame = 2 Query: 575 GLDESTIKSYPKLPYSEARLQKKDSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRXXXXXXXXXXXXAEVVPLAA 850 GLDE TI+SYPK+ YSEA K +TA+CC+ICL DY+ +LR LPDC+HLFH+KC+D WLRL+PTCPVCRTSPLPTPLSTPLAEVVPLA+ Sbjct: 121 GLDEDTIQSYPKILYSEA---KGPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLAS 209
BLAST of gene-KPL71_018589-mRNA1 vs. DB:SwissProt
Match: ATL22_ARATH (RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 2.330e-18 Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 2 Query: 533 GGADHNQSSIVIDVGLDESTIKSYPKLPYSEARLQKKDSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCR 790 G S+ V +GLDESTI+SY K+ E+R S C ICL++Y + + +R LP+C H FH +C+D WL+LH +CPVCR Sbjct: 284 GSVTSQPSNEVARIGLDESTIESYKKVELGESRRLPTGSNDVVCPICLSEYATKETVRCLPECEHCFHTECIDAWLKLHSSCPVCR 369
BLAST of gene-KPL71_018589-mRNA1 vs. DB:SwissProt
Match: ATL31_ARATH (E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 5.445e-18 Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 2 Query: 533 GGADHNQSSIVIDVGLDESTIKSYPKLPYSEARLQKKDSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCR 790 GGA ++ + GLD TI+++P YSE + QK A C+ICL ++ + LRLLP C H+FH C+ WL+ H TCPVCR Sbjct: 81 GGARRRVTNATVARGLDAETIETFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCR 166
BLAST of gene-KPL71_018589-mRNA1 vs. DB:SwissProt
Match: ATL20_ARATH (RING-H2 finger protein ATL20 OS=Arabidopsis thaliana OX=3702 GN=ATL20 PE=2 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 1.828e-17 Identity = 35/77 (45.45%), Postives = 54/77 (70.13%), Query Frame = 2 Query: 560 IVIDVGLDESTIKSYPKLPYSEARLQKKDSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCR 790 +V+ GLD+STI+SY K+ E+R + + C ICL++Y S + +R +P+C H FHV+C+D WL++H +CPVCR Sbjct: 220 VVVTTGLDQSTIESYKKVELGESR-RLPGTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVCR 295
BLAST of gene-KPL71_018589-mRNA1 vs. DB:SwissProt
Match: ATL69_ARATH (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.002e-16 Identity = 48/113 (42.48%), Postives = 70/113 (61.95%), Query Frame = 2 Query: 536 GADHNQSSIVIDV---------GLDESTIKSYPKLPYSEARLQKKDSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRXXXXXXXXXXXXAEVVPLA 847 G D S +V+D+ GLD I+SYP++ ++R + + C SICL DY + + +R +P+C+H FH CVD WLR TCP+CR SP P+ L+TPL+++VPLA Sbjct: 44 GRDEATSDVVLDLPSPAAEVKLGLDRPVIESYPRIVLGDSRRLPRPNNGPC-SICLCDYEAREPVRCIPECNHCFHTDCVDEWLRTSATCPLCRNSPAPSRLATPLSDLVPLA 155
BLAST of gene-KPL71_018589-mRNA1 vs. DB:SwissProt
Match: ATL68_ARATH (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.228e-16 Identity = 50/114 (43.86%), Postives = 68/114 (59.65%), Query Frame = 2 Query: 542 DHNQSSIVIDVGLDESTIKSYPKLPYSEA--------RLQKKDSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRX----XXXXXXXXXXXAEVVPLA 847 D +S V+ GLD S I SYPK +++ + T CSICL +Y +MLR++P+C H FHV C+D WL+L+ +CPVCR +P TP STPL+EVVPL+ Sbjct: 88 DDLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVPLS 201
BLAST of gene-KPL71_018589-mRNA1 vs. DB:SwissProt
Match: ATL67_ARATH (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.263e-16 Identity = 51/109 (46.79%), Postives = 72/109 (66.06%), Query Frame = 2 Query: 566 IDVGLDESTIKSYPKLPYSEARLQKKDSTA-----------TCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRX----XXXXXXXXXXXAEVVPLA 847 + VGLD++ I SYPK +S KD++A T CSICL +Y+ ++MLR++P+C H FH+ C+D WL+L+ +CPVCR +P TPLSTPL+EVVPL+ Sbjct: 101 VVVGLDQAVINSYPKFHFS------KDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLS 203
BLAST of gene-KPL71_018589-mRNA1 vs. DB:SwissProt
Match: ATL6_ARATH (E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 8.027e-16 Identity = 36/86 (41.86%), Postives = 49/86 (56.98%), Query Frame = 2 Query: 533 GGADHNQSSIVIDVGLDESTIKSYPKLPYSEARLQKKDSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCR 790 GGA + GLD S ++++P YS+ + QK C+ICL ++ + LRLLP C H+FH C+D WL H TCPVCR Sbjct: 85 GGARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCR 170
BLAST of gene-KPL71_018589-mRNA1 vs. DB:SwissProt
Match: ATL15_ARATH (E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana OX=3702 GN=ATL15 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.355e-15 Identity = 40/110 (36.36%), Postives = 61/110 (55.45%), Query Frame = 2 Query: 533 GGADHNQSSI--VIDVGLDESTIKSYPKLPYSEARLQKKDSTATCCSICLADYRSSDMLRLLPDCSHLFHVKCVDPWLRLHPTCPVCRXXXXXXXXXXXXAEVVPLAART 856 GG N ++ + GLD S I+++P PYS + + A C +CL ++ + LRL+P C H+FH C+D WLR TCP+CR + +P P + +E+ LA T Sbjct: 73 GGGPGNWLNVRQTTEPGLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCRANLVPVPGESVSSEIPGLARET 182 The following BLAST results are available for this feature:
BLAST of gene-KPL71_018589-mRNA1 vs. DB:SwissProt
Analysis Date: 2023-04-17 (BLAST: C. sinensis DVS_B v1.0) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >gene-KPL71_018589-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018589-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018589-mRNA1; organism=Citrus sinensis; type=mRNA; length=999bpback to top protein sequence of gene-KPL71_018589-mRNA1_Citrus_sinensis_DVS_B_v1 >gene-KPL71_018589-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018589-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018589-mRNA1_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=178bpback to top mRNA from alignment at CM039175.1_Chr6_DVS_B:19488271..19489269- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=999bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:19488271..19489269- (Citrus sinensisback to top Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:19488271..19489269- >gene-KPL71_018589-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018589-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018589-mRNA1; organism=Citrus sinensis; type=CDS; length=537bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:19488271..19489269- (Citrus sinensisback to top |