Transcript Overview
Name | gene-KPL71_018614-mRNA1 |
Unique Name | gene-KPL71_018614-mRNA1_Citrus_sinensis_DVS_B_v1 |
Type | mRNA |
Organism | Citrus sinensis (Sweet orange) |
Sequence length | 2610 |
Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-gnl|WGS:JAHMIT|DVS6B01511.t03-exon1 | rna-gnl|WGS:JAHMIT|DVS6B01511.t03-exon1_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | exon |
rna-gnl|WGS:JAHMIT|DVS6B01511.t03-exon2 | rna-gnl|WGS:JAHMIT|DVS6B01511.t03-exon2_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | exon |
rna-gnl|WGS:JAHMIT|DVS6B01511.t03-exon3 | rna-gnl|WGS:JAHMIT|DVS6B01511.t03-exon3_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | exon |
rna-gnl|WGS:JAHMIT|DVS6B01511.t03-exon4 | rna-gnl|WGS:JAHMIT|DVS6B01511.t03-exon4_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | exon |
rna-gnl|WGS:JAHMIT|DVS6B01511.t03-exon5 | rna-gnl|WGS:JAHMIT|DVS6B01511.t03-exon5_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-gnl|WGS:JAHMIT|DVS6B01511.t03-CDS1 | rna-gnl|WGS:JAHMIT|DVS6B01511.t03-CDS1_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | CDS |
rna-gnl|WGS:JAHMIT|DVS6B01511.t03-CDS2 | rna-gnl|WGS:JAHMIT|DVS6B01511.t03-CDS2_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | CDS |
rna-gnl|WGS:JAHMIT|DVS6B01511.t03-CDS3 | rna-gnl|WGS:JAHMIT|DVS6B01511.t03-CDS3_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | CDS |
rna-gnl|WGS:JAHMIT|DVS6B01511.t03-CDS4 | rna-gnl|WGS:JAHMIT|DVS6B01511.t03-CDS4_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | CDS |
rna-gnl|WGS:JAHMIT|DVS6B01511.t03-CDS5 | rna-gnl|WGS:JAHMIT|DVS6B01511.t03-CDS5_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
gene-KPL71_018614-mRNA1_Citrus_sinensis_DVS_B_v1 | gene-KPL71_018614-mRNA1_Citrus_sinensis_DVS_B_v1 | Citrus sinensis | polypeptide |
gene-KPL71_018614-mRNA1_Citrus_sinensis_DVS_B_v1 | gene-KPL71_018614-mRNA1_Citrus_sinensis_DVS_B_v1-protein | Citrus sinensis | polypeptide |
Homology
The following BLAST results are available for this feature:
BLAST of gene-KPL71_018614-mRNA1 vs.
Analysis Date: 2023-04-17 ( BLAST: C. sinensis DVS_B v1.0)
Total hits: 0
Match Name | E-value | Identity | Description | |
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InterPro
Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 209..243 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >gene-KPL71_018614-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018614-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018614-mRNA1; organism=Citrus sinensis; type=mRNA; length=2610bp TAAgttcaacaaataaatttgtCAATAATTCAAAGTTTAGTATTTTTGAA GTTCCccttttattaattaggaatgtttatcttctcttctcaaataatta taatgtcgTGGAGATGGTGTAGAAACTTAAACATAATACTCAGAATGCGT ATGCGGATGATTATCCGTGGTGCCAATAATACTTTTGTGTTCAACAATAA GTAATCAAtaagaattataataaattatttattatataaaaagaaattag aatgtattattattaatatatttactttattttaaaattagagtaAAATA TTCAAAGTTATAAAGATATTAATAGTTAAtcgttgttatttttattatta tttattataataattatgattattattgttaataatagtAACAACGACGA TCGCAATAACAACAGTAATAATGATGATGTAACAGTGACAACAACAATTA Aagtaataatacaaataacaaattatcaataataccaaaaacaaaaatga tgatgatacgGCAATCTCGGCGGGATGGGACAGTTGGCAACTGTAGCAGC GTGGTATAGTCGGCGACAGTGGCGGCTAGGGGCAAGTACCAGCAACGTTT GCGACGAGTGCGACATTTCGATGTGAGGCTGACGAGATCGAACGCGTGCG ACGAGTGGCGTTCGGCGGTGTGCTGCGCGATTTGACGAGATCAATGCTGC TGTTGGTGGTTCGAATTCCCGGTGAAAGGGAAttggggattttttttttc atttgcattctttttttgtatttttatttaaaaaaaaatggaattaGAAA ATCCTGGACCTGGAGATAGGCTCTGTGCTGACACGTGTACCCAGAAGGAT CGACTTTGGTGCCACAGATGTGGCCAGATAGCATCCGCTGCGTTGATCTT CCCCACCGCAACAAATCGACCTTTTAAGAATTTCCTCGGCTACGCCCACG GATAGAAGGACATAAAACAACTCCCGCTTAATGTACGTCGCCATTTCTCG ACACTTACACGTGGCTTCGAAACTCCGCGAGTGGGAGTTTCTTACTATAG ACGCGAGTGAATGAAACAATACACGACAAAAGTTGATGAGGGAGAAGATG GGACAGAACGGACGAGGAGTGGAATGCACGGGCCGAGTAACAAGGGCCTA ATCGTGTTAGGCGTGTGCTGAGTGGTCACGTGACTTCAGTACGGTCTTTT TCTCATCCAAAAGAAATGTACGTAAGGCCTTGTTTGGCATTCCATCTTTT TCAATGCTGTACAACCCTCgacaattaaactttaaaccAAACAGACTCTA ACAATACACGCGCACTTTTTATAGGGAGAGAAGGAACTTGTAACGTCAAT TTGAAAAACAGAGCCCgtctcctctctctctctcttcccccTTGCCGCTT CCCAAAAACCAACACACACTAAAACATCTCGCTTCCATTTCGTGAAAATC AATCTCCTCTTTCACTCTGTAACATTAAAAACATTTCTCGaaacaacaag aaaaacaaaaattcctagttcttttgttttgtcaaATCGTTTGTTTTTGT TCACAAGCATGGCTGCACAGTTTCCTTCTAACTTGGATAATGGCGAAATA TATCACTTTCCTTctgatattttctttaatgacAAAATCTTCTCTAAGTG CACCCCGCGTCATCCCCTTGACCAcccccaccaccaccaccagcagCTTT GCCGCCACCAGTTCTCTTGTATTGATGACCTCGCTCACCATTTCACTGCT CTCTCTATGCTCCAACGTCAAACCCTAGCTAAGCCCCAAACCCAAATCCC CCATAACTTCGAGCTGTTTACGCCTACGGTTCGAACCGGTACGGTGATAC CTCAGCTTCTTCCTGATTCCTTTCGTGCTAACGGTAACGGTGGCCGTCAA CTTGAACTTGTTCAGAGGCTTCAAGAGTACGGAATCGgctccttttcttc ttttgagtCTAAACCGGGTTATGATTTACAGTTCATCAAACCGACCCCAG CTCAGCTTGAGACCTTTTTGGAAGAGAGGGCTAGTAGGGTTTTACAGGGA CAGCATGTGCAAACGCGAAACCGCTCGCTGAACCAAAACAGGAAGATGCC ATTTTCGGGTAGTGGTTTTGTACTGAAAGGTGGTTTTGCTAGAGAATCTG GAGGAACTGGTGTGTTTCATCCCCATCCTCGCATTAATGATAATGCCAGC AGCACCACTTCTACTGCCACTGTTGCCAAGAAGCAAAGTTTGAGAGATAG TCAGGGGATCCAGTTCACTCAACAGAGGAAATCTGCAAAAAGGCCCGCAT CTGGGTCTGAGGGCTGGACGTGGCTGGGCGCAGGCGCCACTGGGGCGGTC AACGAGACTGGACTCGACTTTTCGTTGTCATATGCATATGCATTAATCAC ATCAACGCTCATCGGTTCACACTTCACACCATTGGGCAATTGGAAGTGTA TAAATGGGCCAGCCAATGCCGCTACGAGCCCAGCATCTACTCGTTGGAGG GAGAGTCCTTATTGGGTTAGCAGTGATGGGTTGATATCTTTTAGGCGTTA AACAAGGACGGACACAAATTGGTCTAAACTCTAAAACTTTTACACGGCAG GAGCATGGTT back to topprotein sequence of gene-KPL71_018614-mRNA1_Citrus_sinensis_DVS_B_v1 >gene-KPL71_018614-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018614-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018614-mRNA1_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=330bp MAAQFPSNLDNGEIYHFPSDIFFNDKIFSKCTPRHPLDHPHHHHQQLCRH QFSCIDDLAHHFTALSMLQRQTLAKPQTQIPHNFELFTPTVRTGTVIPQL LPDSFRANGNGGRQLELVQRLQEYGIGSFSSFESKPGYDLQFIKPTPAQL ETFLEERASRVLQGQHVQTRNRSLNQNRKMPFSGSGFVLKGGFARESGGT GVFHPHPRINDNASSTTSTATVAKKQSLRDSQGIQFTQQRKSAKRPASGS EGWTWLGAGATGAVNETGLDFSLSYAYALITSTLIGSHFTPLGNWKCING PANAATSPASTRWRESPYWVSSDGLISFRR back to topmRNA from alignment at CM039175.1_Chr6_DVS_B:19711029..19716123+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. > ID=; Name=; organism= ; type=; length=5095bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:19711029..19716123+ (Citrus sinensis TAAgttcaacaaataaatttgtCAATAATTCAAAGTTTAGTATTTTTGAA
GTTCCccttttattaattaggaatgtttatcttctcttctcaaataatta
taatgtcgTGGAGATGGTGTAGAAACTTAAACATAATACTCAGAATGCGT
ATGCGGATGATTATCCGTGGTGCCAATAATACTTTTGTGTTCAACAATAA
GTAATCAAtaagaattataataaattatttattatataaaaagaaattag
aatgtattattattaatatatttactttattttaaaattagagtaAAATA
TTCAAAGTTATAAAGATATTAATAGTTAAtcgttgttatttttattatta
tttattataataattatgattattattgttaataatagtAACAACGACGA
TCGCAATAACAACAGTAATAATGATGATGTAACAGTGACAACAACAATTA
Aagtaataatacaaataacaaattatcaataataccaaaaacaaaaatga
tgatgatacgGCAATCTCGGCGGGATGGGACAGTTGGCAACTGTAGCAGC
GTGGTATAGTCGGCGACAGTGGCGGCTAGGGGCAAGTACCAGCAACGTTT
GCGACGAGTGCGACATTTCGATGTGAGGCTGACGAGATCGAACGCGTGCG
ACGAGTGGCGTTCGGCGGTGTGCTGCGCGATTTGACGAGATCAATGCTGC
TGTTGGTGGTTCGAATTCCCGGTGAAAGGGAAttggggattttttttttc
atttgcattctttttttgtatttttatttaaaaaaaaatggaattaGAAA
ATCCTGGACCTGGAGATAGGCTCTGTGCTGACACGTGTACCCAGAAGGAT
CGACTTTGGTGCCACAGATGTGGCCAGATAGCATCCGCTGCGTTGATCTT
CCCCACCGCAACAAATCGACCTTTTAAGAATTTCCTCGGCTACGCCCACG
GATAGAAGGACATAAAACAACTCCCGCTTAATGTACGTCGCCATTTCTCG
ACACTTACACGTGGCTTCGAAACTCCGCGAGTGGGAGTTTCTTACTATAG
ACGCGAGTGAATGAAACAATACACGACAAAAGTTGATGAGGGAGAAGATG
GGACAGAACGGACGAGGAGTGGAATGCACGGGCCGAGTAACAAGGGCCTA
ATCGTGTTAGGCGTGTGCTGAGTGGTCACGTGACTTCAGTACGGTCTTTT
TCTCATCCAAAAGAAATGTACGTAAGGCCTTGTTTGGCATTCCATCTTTT
TCAATGCTGTACAACCCTCgacaattaaactttaaaccAAACAGACTCTA
ACAATACACGCGCACTTTTTATAGGGAGAGAAGGAACTTGTAACGTCAAT
TTGAAAAACAGAGCCCgtctcctctctctctctcttcccccTTGCCGCTT
CCCAAAAACCAACACACACTAAAACATCTCGCTTCCATTTCGTGAAAATC
AATCTCCTCTTTCACTCTGTAACATTAAAAACATTTCTCGaaacaacaag
aaaaacaaaaattcctagttcttttgttttgtcaaATCGTTTGTTTTTGT
TCACAAGCATGGCTGCACAGTTTCCTTCTAACTTGGATAATGGCGAAATA
TATCACTTTCCTTctgatattttctttaatgacAAAATCTTCTCTAAGTG
CACCCCGCGTCATCCCCTTGACCAcccccaccaccaccaccagcagCTTT
GCCGCCACCAGTTCTCTTGTATTGATGACCTCGCTCACCATTTCACTGCT
CTCTCTATGCTCCAACGTCAAACCCTAGCTAAGCCCCAAACCCAAATCCC
CCATAACTTCGAGGTTCTATCAGTTTAACAACTTTACGATATTTTCTTAC
ATGATGTCTTCTTGTAATTTGAAGCTTTGCATTGCTCTAAGTgtgtttta
ttcatttatttatgtattctTTTACCTCTTTTCAGCTGTTTACGCCTACG
GTTCGAACCGGTACGGTGATACCTCAGCTTCTTCCTGATTCCTTTCGTGC
TAACGGTAACGGTGGCCGTCAACTTGAACTTGTTCAGAGGCTTCAAGAGT
ACGGAATCGgctccttttcttcttttgagtCTAAACCGGGTTATGATTTA
CAGTTCATCAAACCGACCCCAGCTCAGGTGATTAACTTGAACCGGATTgt
gttcttttttaaaaattttatttaatttttttctggaTTTGTCTTTTcag
tgctttttttttttttttttctatttttacttttactgCTTTTATGAGGA
TGACTTTTGAGAagattgatgattttttttcacttggtTGGTGTGTGGTT
ATAGCTTGAGACCTTTTTGGAAGAGAGGGCTAGTAGGGTTTTACAGGGAC
AGCATGTGCAAACGCGAAACCGCTCGCTGAACCAAAACAGGAAGATGCCA
TTTTCGGGTAGTGGTTTTGTACTGAAAGGTGGTTTTGCTAGAGAATCTGG
AGGAACTGGTGTGTTTCATCCCCATCCTCGCATTAATGATAATGCCAGCA
GCACCACTTCTACTGCCACTGTTGCCAAGAAGCAAAGTGAGttgttaatt
gttttttgtttttttgggttttgcgatgtttcttttttcaggtttttgct
ttttctgattttgatGTTTAAGTATgggtttttcttttatctgcCGTAAA
AAATCATGACTGTTTTACTGTATGCTTGTTTTGGTCATTTGGTTCTGCTG
CTGCCACAGTTATTTAAATCGTGTGAAAGGTAAATAATTATAACCCCATG
AAGAAAAGGGAGATGTATAAGCATTAATTTGTGgccatgttttatttttg
tacttttttttttggttacaCAATTTAAAGACATTggattgaaatatttt
ctacGGTAAGTTCACCTTTGAAATGACAATTGTGATGCTGTTATATCATC
CATTCAGTTGGGTTTTAATCCAAGGATCTTCAACTCATTGTGTACAAAAA
GAGGCTAAGCATTGTTACTGTTGTATTTGAGAATAAATACAGCACTTTAG
TTTATTCATAGGCCCTGTACATTTTGAAAACCTCAAGTTCTCTGGTAAAC
TCCTAAGTTTTTTCACCTGTGATCCCCTAACTAATGATATATTATGTACA
CATGAAAACTTCGTGGTCGATAATGAAATACTTGGGAGTGTAACTGGGAA
CCTGGTGGTTTCCAACTGAGAGTGGGGACACGCCCCTTGTATTTTTACAT
AGTACAAAGCATGCAAAGGATGAAAAGAAGTTGTTAGTTTGACCATAGAA
CAGGTATATCAAAGTTGTgcttatattattatgtagCATGTGTTATTTTT
GGTGTTGTGATAAGGTCAAAGAAAATGTGTGGAATATCGAGAAGGAAATA
TTGAGACTATGTAGTGAATTTTCTCATTGCTTCTAAAATATGACAGCCTG
AAAATCTCGGTATTCTCTTgctaattttacatttttggaGCTAAATGAAT
TTTCAACACTTACTGTTTGAAAGGGATATTGGATATAGGTCCTCTCCTTT
AAATGGTAGTCTCAAAAGTAGGATATCTGACTTCTAACTATGGGAACTTT
TTGGTAAGGGTAATTTTATCATATCTTATGTTTCAAGAGGaacttttatt
tcatgaaATGTTTTGGCATGCATTGAGCATGTAAAAactcataatttttg
ttgaattttctcCGGAAAGGAATGTTCTGCAAGATTAATGATGAGAACTA
AGAATTACTCCATTTGTTTCCTTTTGAGTGCTTGGTTGTATGGAAAATTA
CAGGACAATTCGAAAAGCATAAGCTTTCACTCATATACAGCATTTTCTTA
TGCATATTAATTAGTAATGGCAGGTTTGAGAGATAGTCAGGGGATCCAGT
TCACTCAACAGAGGAAATCTGCAAAAAGGCCCGCATCTGTGAGTACAAAC
AAGCATAATCATCATCCTCCCCAAGAGATGAGTCTGCCCAATGAGTGGAC
TTACTGAGCCAACACCAATGGTAGATTAAGAACTCTTAAGAGAAGAAATA
GAAGGTAAAACAATCTTTTGGGCTTTGTGCAGCGGATCTTCAAAGCAATA
CATATAGTTGGAGTTTGAAGAGAATGTTGTGTTCATTTTGCCCATCCTGA
GATTTGTATAAAAGATAAGGTGTTAGTAGCTCCTTTCGGTAATATGATTG
tctatatattatattgttaCTAGTTTCAGATATAATAGATGTAATTTTGG
TAAATAGAGAGTATTAAAAACTTCTTGGTAGACCTTCTCTTAATGGAACT
cgtcaaaatttatattttagctTGAAATGATGGTATCAATATTAATATCA
CTGTCCATTTGTATCATTTGTTGGGTaagattattttacaaccattTTTT
CATAATCTCTTCAGTCCTCAACTTGTTTGATATGCTCAAGTTCGAAACGT
AAAAAACTTGAGACACATGCCGGAAACTTGAATAGGCTGAAACACTATGC
ccaattttcatattatagTATAACAACTTTAGCATGTGGCACCTTTATCA
TGAAGACACCTATTTACAGCAAACATGTAAGTTTCATTGaacttattctt
atttttcattaaacgTGTAATTATGTTATCCAACGAGGCTGGTCCCAACG
CAAGTGAATAAGGACAAATTTTGGTATAAAAATGGTTCGTGGGATTGTCA
TTTTGCCAGAGGCGGCCAAATGCGGGCCCCTTGGGAGTTTCCAAATTTGC
AAAAGAGTCGAATTGCAATCTGAAAGAGACCGTGGGTTGTTGTTTTACTG
CAGCATCTTCTGCGTTGAATGCTGAATTCCCTTTCAGGGGTCTGAGGGCT
GGACGTGGCTGGGCGCAGGCGCCACTGGGGCGGTCAACGAGACTGGACTC
GACTTTTCGTTGTCATATGCATATGCATTAATCACATCAACGCTCATCGG
TTCACACTTCACACCATTGGGCAATTGGAAGTGTATAAATGGGCCAGCCA
ATGCCGCTACGAGCCCAGCATCTACTCGTTGGAGGGAGAGTCCTTATTGG
GTTAGCAGTGATGGGTTGATATCTTTTAGGCGTTAAACAAGGACGGACAC
AAATTGGTCTAAACTCTAAAACTTTTACACGGCAGGAGCATGGTT back to topCoding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:19711029..19716123+ >gene-KPL71_018614-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018614-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018614-mRNA1; organism=Citrus sinensis; type=CDS; length=993bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:19711029..19716123+ (Citrus sinensis ATGGCTGCACAGTTTCCTTCTAACTTGGATAATGGCGAAATATATCACTT TCCTTctgatattttctttaatgacAAAATCTTCTCTAAGTGCACCCCGC GTCATCCCCTTGACCAcccccaccaccaccaccagcagCTTTGCCGCCAC CAGTTCTCTTGTATTGATGACCTCGCTCACCATTTCACTGCTCTCTCTAT GCTCCAACGTCAAACCCTAGCTAAGCCCCAAACCCAAATCCCCCATAACT TCGAGCTGTTTACGCCTACGGTTCGAACCGGTACGGTGATACCTCAGCTT CTTCCTGATTCCTTTCGTGCTAACGGTAACGGTGGCCGTCAACTTGAACT TGTTCAGAGGCTTCAAGAGTACGGAATCGgctccttttcttcttttgagt CTAAACCGGGTTATGATTTACAGTTCATCAAACCGACCCCAGCTCAGCTT GAGACCTTTTTGGAAGAGAGGGCTAGTAGGGTTTTACAGGGACAGCATGT GCAAACGCGAAACCGCTCGCTGAACCAAAACAGGAAGATGCCATTTTCGG GTAGTGGTTTTGTACTGAAAGGTGGTTTTGCTAGAGAATCTGGAGGAACT GGTGTGTTTCATCCCCATCCTCGCATTAATGATAATGCCAGCAGCACCAC TTCTACTGCCACTGTTGCCAAGAAGCAAAGTTTGAGAGATAGTCAGGGGA TCCAGTTCACTCAACAGAGGAAATCTGCAAAAAGGCCCGCATCTGGGTCT GAGGGCTGGACGTGGCTGGGCGCAGGCGCCACTGGGGCGGTCAACGAGAC TGGACTCGACTTTTCGTTGTCATATGCATATGCATTAATCACATCAACGC TCATCGGTTCACACTTCACACCATTGGGCAATTGGAAGTGTATAAATGGG CCAGCCAATGCCGCTACGAGCCCAGCATCTACTCGTTGGAGGGAGAGTCC TTATTGGGTTAGCAGTGATGGGTTGATATCTTTTAGGCGTTAA back to top
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