Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-gnl|WGS:JAHMIT|DVS6B01515.t01-exon1 rna-gnl|WGS:JAHMIT|DVS6B01515.t01-exon1_Citrus_sinensis_DVS_B_v1 Citrus sinensis exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-gnl|WGS:JAHMIT|DVS6B01515.t01-CDS1 rna-gnl|WGS:JAHMIT|DVS6B01515.t01-CDS1_Citrus_sinensis_DVS_B_v1 Citrus sinensis CDS
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
gene-KPL71_018618-mRNA1_Citrus_sinensis_DVS_B_v1 gene-KPL71_018618-mRNA1_Citrus_sinensis_DVS_B_v1 Citrus sinensis polypeptide
gene-KPL71_018618-mRNA1_Citrus_sinensis_DVS_B_v1 gene-KPL71_018618-mRNA1_Citrus_sinensis_DVS_B_v1-protein Citrus sinensis polypeptide
Homology
BLAST of gene-KPL71_018618-mRNA1 vs. DB:SwissProt
Match:
NHL26_ARATH (NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana OX=3702 GN=NHL26 PE=2 SV=1)
HSP 1 Score: 65.0846 bits (157), Expect = 1.706e-10
Identity = 53/152 (34.87%), Postives = 78/152 (51.32%), Query Frame = 3
Query: 276 FATWLILKPEFPEFRVDSASIAQLX-XXXXXXXXXXXWQLSLRVRNPNRKLALVYNTLEAAVLY-GEWELDSTLLPPFSQEKGNETRLHFQAGLLSEY-------VGESVARGIEKERARGEVEFGIGVYGWVRYK-ARWWSMRWRFMNVYC 701
F WLIL PE PEF + A I LN TTS+ + ++ QL+L +NPN+K+ + Y+ L Y G+ LPPF Q H + LL+ + V +S I +ER+ G++ G+ + G +R+K W S +RF NV C
Sbjct: 43 FLVWLILHPERPEFSLTEADIYSLNLTTSSTHLLNSSVQLTLFSKNPNKKVGIYYDKLLVYAAYRGQQITSEASLPPFYQS-------HEEINLLTAFLQGTELPVAQSFGYQISRERSTGKIIIGMKMDGKLRWKIGTWVSGAYRF-NVNC 186
BLAST of gene-KPL71_018618-mRNA1 vs. DB:SwissProt
Match:
Y1816_ARATH (Uncharacterized protein At1g08160 OS=Arabidopsis thaliana OX=3702 GN=At1g08160 PE=2 SV=1)
HSP 1 Score: 59.6918 bits (143), Expect = 1.312e-8
Identity = 37/153 (24.18%), Postives = 75/153 (49.02%), Query Frame = 3
Query: 282 TWLILKPEFPEFRVDSASIAQLXXXXXXXXXXXXWQLSLRVRNPNRKLALVYNTLEAAVLYGEWELDSTLLPPFSQEKGNETRLHFQAGLLSEYVGESV--ARGIEKERARGEVEFGIGVYGWVRYKARWWSMRWRFMNVYCNGVKIGVSNDG 734
T+L L+P+ + V++AS+ + + + + A + ++ NP + +++ Y+++ + + + + PF Q NETR+ Q L+S V S AR + E+++G +E + + V YK + R R + C V I V++
Sbjct: 58 TYLTLRPKRLIYTVEAASVQEFAIGNNDDHINAKFSYVIKSYNPEKHVSVRYHSMRISTAHHNQSVAHKNISPFKQRPKNETRIETQ--LVSHNVALSKFNARDLRAEKSKGTIEMEVYITARVSYKTWIFRSRRRTLKAVCTPVMINVTSSS 208
The following BLAST results are available for this feature:
BLAST of gene-KPL71_018618-mRNA1 vs. DB:SwissProt
Analysis Date: 2023-04-17 (
BLAST: C. sinensis DVS_B v1.0 )
Total hits: 2
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 Expect = 1.71e-10 / Id = 34.87 Expect = 1.31e-8 / Id = 24.18 Sequence NHL26_ARATH Y1816_ARATH
Match Name E-value Identity Description
NHL26_ARATH 1.706e-10 34.87 NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana ... [more]
Y1816_ARATH 1.312e-8 24.18 Uncharacterized protein At1g08160 OS=Arabidopsis t... [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>gene-KPL71_018618-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018618-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018618-mRNA1; organism=Citrus sinensis; type=mRNA; length=2565bp CGCCTTGTTTTGATCATAATCAAATCATTCATCAATAATCCTcactttca aatttcaacaaagaaaaaaacgAAATGGCCACGTCAGTGGAAGCCAATAA GCCGGAGCCGGCGACTGGCTACCCGGTCACCTACGCCTACGCGGCCCCAC CACCTCAGCCGCAAGTGGCACCCACCAACCGATCTCCATTCCGTCTTGCC AGTTTCTGGTCCCGACTCCTCTGCCGTCTGTTCCTCGTCGTTATCGTGAT CATCTCGATCATGGCAGTAGCCTCTTTCGCGACGTGGCTGATTCTCAAAC CCGAATTCCCCGAGTTCCGAGTCGACTCAGCTTCCATCGCCCAACTCAAC ACCACCTCGGCCAACTCCACCATGACCGCCACCTGGCAGCTCTCTCTCAG AGTCAGGAACCCGAACAGAAAACTGGCTCTCGTCTACAACACGCTCGAGG CCGCGGTCTTGTACGGCGAATGGGAGCTCGACTCGACGCTGCTGCCGCCG TTCTCGCAGGAGAAGGGGAATGAGACGCGTCTCCATTTCCAAGCGGGGTT ACTGAGCGAGTACGTCGGGGAGAGCGTGGCCCGTGGGATAGAGAAGGAGA GAGCGCGTGGAGAAGTGGAGTTCGGTATTGGGGTCTATGGGTGGGTCCGG TATAAAGCAAGGTGGTGGAGCATGCGGTGGCGTTTTATGAATGTGTACTG TAACGGCGTTAAAATTGGGGTTTCGAATGACGGTGGGACCGCTGGTGATT TGGTGGGCCAGGTCAGACCTTGCCGGGTTGAAATGTGAGTTGAGTTGTAA TGCAAGGACGATGATCGTGAACATGGGATCCTTTCTCGTTAAACGTTTTT GTGAAACGTAGTTATTGTAGTTTATTACATACGGCGgtaattagaaaatt tgtatacATTTTCAAAGTTAATAATCGAAGTTACgttattattctattaa taataatattaacagtagtagtaataataataatgtctAATGACTAACAA AGTTTCTAATATCCATGATCCTAGtttgtttttatcaaaattttcagtta atgtgttatatttattattattttttttttggggaattTGAGAAATCTAA cctgaaatttgaaaaaatcaataaaagaaacatgcttgttttatttttag ccACGTCTATTAGGGTTGGCAAATTAAGTGTTTGGGCTGGATTTTTTCAA GCCCAAACCTAAGTCCATTAGAGTAGATGTGCAAGGATTGAGCATGGGCG GGCTTGAACttctacttattttttaaacttttttaaaattattgtaaact tgaaataggttaataatattcaagttattataattaataataaattaaag aaaataaatatttaaaaataaaataacaaataaagaaaataaaataaata aaagtttagagatttaattttttaatattagtttaTAATCCGAGcactct cttaattaattaatacttaaaagagatattagtattataattttaagttt ttttattaattattaatatataattagttatttgtgctttatttttttta tttttttatttttttattttttaaattttaatttattattttatttaaaa aaataaaaaaacttgagCCTGAcctaaactttttttttaaacccttATCT AAGCCCTCACGTGGAAGGCTTGGGCCAAAACTTCGTTAAAGCATGAATTA CgagaaaatttattgattattagtACAGTAACTTGGATTGATTCTCAAAA GGGCATAAAAGTAATGATACAGACATCTTTTATAcatgtattataattat tatatacatgtgtgtgtgcgtgtgtgtgtgtttagtggcgtatctttcaa attctcaattgaatttaaatttctttgaagGGGGAAATCACTTTTTATCT GCGCTGGATTTTCTCTTGTTACGAGTTTGTTCATACCATTGTTCTTAACT TTTTATACATGTCTTAAGGTTAGAAGAAATGCATGCACTACTTGAACTTG AACctgatcaattttttatttaaaaaaaaaaaaaaaatagtttcttCACT TTTGCAAGTAGAATTATAACTTTCTTcactcatattttaaaatatttaag ttcTGAATTGTGTTTGTGTTGAAGGGCCTTTTGGCAATATTTTAGAgcta atacattttttgatTACTCTGTTTCGGCACAAACATTTCTGCTGAAGGAT ACAAAACTGTTTGgaaaatcaataatgcatgttTTAAATCCTCAACTTTC TGAAAGGTTTAAAGCATCTACTTCTCTCTGCTACTGCATTGCTGGCGTTC CTAGGATGGGAAGTGAAAATCATAGTTTGAGGAAGCTTTCTGAGCTTGCG TTAGGTTAGTGCAACAGACAAGCCAGCGAGGGAGATATGGGGATCAATCT TGTATTTCCTGTATTTGGGTTGCCTTTTGTCTTTGCCTCCTttgtccttt ttcttttcttcttggtGCTTCTTGCAAAATTGAGATGCTAGCCTGGCTTC GGAGTGGCTTTGGGAATGGCTGATGCTGGCGACTATTAGCTCCTACCTGA CTGGGAATGGCCCCC back to top protein sequence of gene-KPL71_018618-mRNA1_Citrus_sinensis_DVS_B_v1
>gene-KPL71_018618-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018618-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018618-mRNA1_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=237bp MATSVEANKPEPATGYPVTYAYAAPPPQPQVAPTNRSPFRLASFWSRLLC RLFLVVIVIISIMAVASFATWLILKPEFPEFRVDSASIAQLNTTSANSTM TATWQLSLRVRNPNRKLALVYNTLEAAVLYGEWELDSTLLPPFSQEKGNE TRLHFQAGLLSEYVGESVARGIEKERARGEVEFGIGVYGWVRYKARWWSM RWRFMNVYCNGVKIGVSNDGGTAGDLVGQVRPCRVEM back to top mRNA from alignment at CM039175.1_Chr6_DVS_B:19727619..19730183+
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
> ID=; Name=; organism= ; type=; length=2565bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:19727619..19730183+ (Citrus sinensisCGCCTTGTTTTGATCATAATCAAATCATTCATCAATAATCCTcactttca
aatttcaacaaagaaaaaaacgAAATGGCCACGTCAGTGGAAGCCAATAA
GCCGGAGCCGGCGACTGGCTACCCGGTCACCTACGCCTACGCGGCCCCAC
CACCTCAGCCGCAAGTGGCACCCACCAACCGATCTCCATTCCGTCTTGCC
AGTTTCTGGTCCCGACTCCTCTGCCGTCTGTTCCTCGTCGTTATCGTGAT
CATCTCGATCATGGCAGTAGCCTCTTTCGCGACGTGGCTGATTCTCAAAC
CCGAATTCCCCGAGTTCCGAGTCGACTCAGCTTCCATCGCCCAACTCAAC
ACCACCTCGGCCAACTCCACCATGACCGCCACCTGGCAGCTCTCTCTCAG
AGTCAGGAACCCGAACAGAAAACTGGCTCTCGTCTACAACACGCTCGAGG
CCGCGGTCTTGTACGGCGAATGGGAGCTCGACTCGACGCTGCTGCCGCCG
TTCTCGCAGGAGAAGGGGAATGAGACGCGTCTCCATTTCCAAGCGGGGTT
ACTGAGCGAGTACGTCGGGGAGAGCGTGGCCCGTGGGATAGAGAAGGAGA
GAGCGCGTGGAGAAGTGGAGTTCGGTATTGGGGTCTATGGGTGGGTCCGG
TATAAAGCAAGGTGGTGGAGCATGCGGTGGCGTTTTATGAATGTGTACTG
TAACGGCGTTAAAATTGGGGTTTCGAATGACGGTGGGACCGCTGGTGATT
TGGTGGGCCAGGTCAGACCTTGCCGGGTTGAAATGTGA GTTGAGTTGTAA
TGCAAGGACGATGATCGTGAACATGGGATCCTTTCTCGTTAAACGTTTTT
GTGAAACGTAGTTATTGTAGTTTATTACATACGGCGgtaattagaaaatt
tgtatacATTTTCAAAGTTAATAATCGAAGTTACgttattattctattaa
taataatattaacagtagtagtaataataataatgtctAATGACTAACAA
AGTTTCTAATATCCATGATCCTAGtttgtttttatcaaaattttcagtta
atgtgttatatttattattattttttttttggggaattTGAGAAATCTAA
cctgaaatttgaaaaaatcaataaaagaaacatgcttgttttatttttag
ccACGTCTATTAGGGTTGGCAAATTAAGTGTTTGGGCTGGATTTTTTCAA
GCCCAAACCTAAGTCCATTAGAGTAGATGTGCAAGGATTGAGCATGGGCG
GGCTTGAACttctacttattttttaaacttttttaaaattattgtaaact
tgaaataggttaataatattcaagttattataattaataataaattaaag
aaaataaatatttaaaaataaaataacaaataaagaaaataaaataaata
aaagtttagagatttaattttttaatattagtttaTAATCCGAGcactct
cttaattaattaatacttaaaagagatattagtattataattttaagttt
ttttattaattattaatatataattagttatttgtgctttatttttttta
tttttttatttttttattttttaaattttaatttattattttatttaaaa
aaataaaaaaacttgagCCTGAcctaaactttttttttaaacccttATCT
AAGCCCTCACGTGGAAGGCTTGGGCCAAAACTTCGTTAAAGCATGAATTA
CgagaaaatttattgattattagtACAGTAACTTGGATTGATTCTCAAAA
GGGCATAAAAGTAATGATACAGACATCTTTTATAcatgtattataattat
tatatacatgtgtgtgtgcgtgtgtgtgtgtttagtggcgtatctttcaa
attctcaattgaatttaaatttctttgaagGGGGAAATCACTTTTTATCT
GCGCTGGATTTTCTCTTGTTACGAGTTTGTTCATACCATTGTTCTTAACT
TTTTATACATGTCTTAAGGTTAGAAGAAATGCATGCACTACTTGAACTTG
AACctgatcaattttttatttaaaaaaaaaaaaaaaatagtttcttCACT
TTTGCAAGTAGAATTATAACTTTCTTcactcatattttaaaatatttaag
ttcTGAATTGTGTTTGTGTTGAAGGGCCTTTTGGCAATATTTTAGAgcta
atacattttttgatTACTCTGTTTCGGCACAAACATTTCTGCTGAAGGAT
ACAAAACTGTTTGgaaaatcaataatgcatgttTTAAATCCTCAACTTTC
TGAAAGGTTTAAAGCATCTACTTCTCTCTGCTACTGCATTGCTGGCGTTC
CTAGGATGGGAAGTGAAAATCATAGTTTGAGGAAGCTTTCTGAGCTTGCG
TTAGGTTAGTGCAACAGACAAGCCAGCGAGGGAGATATGGGGATCAATCT
TGTATTTCCTGTATTTGGGTTGCCTTTTGTCTTTGCCTCCTttgtccttt
ttcttttcttcttggtGCTTCTTGCAAAATTGAGATGCTAGCCTGGCTTC
GGAGTGGCTTTGGGAATGGCTGATGCTGGCGACTATTAGCTCCTACCTGA
CTGGGAATGGCCCCC back to top Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:19727619..19730183+
>gene-KPL71_018618-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018618-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018618-mRNA1; organism=Citrus sinensis; type=CDS; length=714bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:19727619..19730183+ (Citrus sinensis ATGGCCACGTCAGTGGAAGCCAATAAGCCGGAGCCGGCGACTGGCTACCC GGTCACCTACGCCTACGCGGCCCCACCACCTCAGCCGCAAGTGGCACCCA CCAACCGATCTCCATTCCGTCTTGCCAGTTTCTGGTCCCGACTCCTCTGC CGTCTGTTCCTCGTCGTTATCGTGATCATCTCGATCATGGCAGTAGCCTC TTTCGCGACGTGGCTGATTCTCAAACCCGAATTCCCCGAGTTCCGAGTCG ACTCAGCTTCCATCGCCCAACTCAACACCACCTCGGCCAACTCCACCATG ACCGCCACCTGGCAGCTCTCTCTCAGAGTCAGGAACCCGAACAGAAAACT GGCTCTCGTCTACAACACGCTCGAGGCCGCGGTCTTGTACGGCGAATGGG AGCTCGACTCGACGCTGCTGCCGCCGTTCTCGCAGGAGAAGGGGAATGAG ACGCGTCTCCATTTCCAAGCGGGGTTACTGAGCGAGTACGTCGGGGAGAG CGTGGCCCGTGGGATAGAGAAGGAGAGAGCGCGTGGAGAAGTGGAGTTCG GTATTGGGGTCTATGGGTGGGTCCGGTATAAAGCAAGGTGGTGGAGCATG CGGTGGCGTTTTATGAATGTGTACTGTAACGGCGTTAAAATTGGGGTTTC GAATGACGGTGGGACCGCTGGTGATTTGGTGGGCCAGGTCAGACCTTGCC GGGTTGAAATGTGA back to top