gene-KPL71_018619-mRNA1
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of gene-KPL71_018619-mRNA1 vs. DB:SwissProt
Match: NHL1_ARATH (NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=NHL1 PE=2 SV=1) HSP 1 Score: 247.284 bits (630), Expect = 1.588e-75 Identity = 127/198 (64.14%), Postives = 166/198 (83.84%), Query Frame = 1 Query: 208 KVCDKHGCKRRKXXXXXXXXXXXXXXXXXXXXXXXXXXXRPTKPRFILQDATVYVFNVSN--PNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCSAYINFGDRQAGTAVGNNAVKY 795 K C+ HG RRK+ RRI I+ + I+ +TIL++WAIL+P+KPRFILQDATVY FNVS PN+LTS+FQ+T+SSRNPN++IGIYYD+LD+YATY SQQIT+ TS+P TYQGHK++++WSP+VYG +VP+AP+N VSL D+ +G++ L+ + DGRVRWKVGTFITGKYHL+V+C AYINFG++ G VG+NAVKY Sbjct: 2 KDCENHGHSRRKLIRRIFWSIIFVLFIIFLTILLIWAILQPSKPRFILQDATVYAFNVSGNPPNLLTSNFQITLSSRNPNNKIGIYYDRLDVYATYRSQQITFPTSIPPTYQGHKDVDIWSPFVYGTSVPIAPFNGVSLDTDKDNGVVLLIIRADGRVRWKVGTFITGKYHLHVKCPAYINFGNKANGVIVGDNAVKY 199
BLAST of gene-KPL71_018619-mRNA1 vs. DB:SwissProt
Match: NHL12_ARATH (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=NHL12 PE=2 SV=1) HSP 1 Score: 243.432 bits (620), Expect = 5.896e-74 Identity = 109/159 (68.55%), Postives = 134/159 (84.28%), Query Frame = 1 Query: 325 RPTKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCSAYINFGDRQAGTAVGNNAVKYQL 801 +PTKPRFILQDATVY FN+S PN+LTS+FQ+TI+SRN N RIGIYYD+L +YATY +QQIT +T++P TYQGHKE NVWSP+VYGN+VP+AP+NAV+L +Q+ G + L+ + DGRVRWKVGT ITGKYHL+VRC A+IN D+ AG VG NAVKY L Sbjct: 44 QPTKPRFILQDATVYAFNLSQPNLLTSNFQITIASRNRNSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWSPFVYGNSVPIAPFNAVALGDEQNRGFVTLIIRADGRVRWKVGTLITGKYHLHVRCQAFINLADKAAGVHVGENAVKYML 202
BLAST of gene-KPL71_018619-mRNA1 vs. DB:SwissProt
Match: NHL26_ARATH (NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana OX=3702 GN=NHL26 PE=2 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 5.317e-35 Identity = 62/143 (43.36%), Postives = 97/143 (67.83%), Query Frame = 1 Query: 328 PTKPRFILQDATVYVFNV--SNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCSAYINFG 750 P +P F L +A +Y N+ S+ ++L SS Q+T+ S+NPN ++GIYYDKL +YA Y QQIT + SLP YQ H+EIN+ + ++ G +PVA +++++S+G I + K+DG++RWK+GT+++G Y V C A + FG Sbjct: 51 PERPEFSLTEADIYSLNLTTSSTHLLNSSVQLTLFSKNPNKKVGIYYDKLLVYAAYRGQQITSEASLPPFYQSHEEINLLTAFLQGTELPVAQSFGYQISRERSTGKIIIGMKMDGKLRWKIGTWVSGAYRFNVNCLAIVAFG 193
BLAST of gene-KPL71_018619-mRNA1 vs. DB:SwissProt
Match: NHL6_ARATH (NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=NHL6 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.043e-12 Identity = 43/158 (27.22%), Postives = 74/158 (46.84%), Query Frame = 1 Query: 325 RPTKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCSAYINFGDRQAGTAVGNNAVKYQ 798 +P P + + + F ++ + LT++F VTI+++NPN++IGIYY+ ++ + SLP YQGH+ V + G + Q Q +G IPL +++ VR K G + VRC +++ + NN +K Q Sbjct: 92 KPKLPDYSIDRLQLTRFALNQDSSLTTAFNVTITAKNPNEKIGIYYEDGSKITVWYMEHQLSNGSLPKFYQGHENTTVIYVEMTGQTQNASGLRTTLEEQQQRTGNIPLRIRVNQPVRVKFGKLKLFEVRFLVRCGVFVD-------SLATNNVIKIQ 242
BLAST of gene-KPL71_018619-mRNA1 vs. DB:SwissProt
Match: NHL10_ARATH (NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.360e-12 Identity = 43/124 (34.68%), Postives = 71/124 (57.26%), Query Frame = 1 Query: 325 RPTKPRFILQDATVYVFNVSNP-NVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWSPYVYG-NAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVG 690 RP +F + DA++ F+ ++P N+L + +T+ RNPN RIG+YYD+++ +A Y ++ + T P YQGHK V +P G N V + +L ++ SG+ + K RVR+K+G Sbjct: 64 RPRAIKFHVTDASLTRFDHTSPDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAYYEGKRFSTITLTP-FYQGHKNTTVLTPTFQGQNLVIFNAGQSRTLNAERISGVYNIEIKFRLRVRFKLG 186
BLAST of gene-KPL71_018619-mRNA1 vs. DB:SwissProt
Match: NHL3_ARATH (NDR1/HIN1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=NHL3 PE=1 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 3.238e-9 Identity = 37/137 (27.01%), Postives = 66/137 (48.18%), Query Frame = 1 Query: 325 RPTKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWSPYVYG-NAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCS 732 RP +F + DA + F + N L + + + RNPN RIG+YYD++++ Y Q+ ++ YQGHK V + G V + L +D +S I + K+ ++R+K G + ++ ++C Sbjct: 71 RPNAIKFHVTDAKLTEFTLDPTNNLRYNLDLNFTIRNPNRRIGVYYDEIEVRGYYGDQRFGMSNNISKFYQGHKNTTVVGTKLVGQQLVLLDGGERKDLNEDVNSQIYRIDAKLRLKIRFKFGLIKSWRFKPKIKCD 207
BLAST of gene-KPL71_018619-mRNA1 vs. DB:SwissProt
Match: NHL13_ARATH (NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana OX=3702 GN=NHL13 PE=2 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 3.249e-8 Identity = 35/140 (25.00%), Postives = 66/140 (47.14%), Query Frame = 1 Query: 325 RPTKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWSPYVYGNAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRCSAYIN 744 RP P++ ++ +V N+++ + ++ SF VT+ SRN N +IG+YY+K Y++ +P YQ K + V + G+ + + + + S +P KI V+ K G+ T + V C ++ Sbjct: 101 RPEAPKYSIEGFSVSGINLNSTSPISPSFNVTVRSRNGNGKIGVYYEKESSVDVYYNDVDISNGVMPVFYQPAKNVTVVKLVLSGSKIQLTSGMRKEMRNEVSKKTVPFKLKIKAPVKIKFGSVKTWTMIVNVDCDVTVD 240
BLAST of gene-KPL71_018619-mRNA1 vs. DB:SwissProt
Match: NHL2_ARATH (NDR1/HIN1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=NHL2 PE=2 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 3.716e-8 Identity = 40/136 (29.41%), Postives = 63/136 (46.32%), Query Frame = 1 Query: 325 RPTKPRFILQDATVYVFNVSNPNVLTSSFQVTISSRNPNDRIGIYYDKLDLYATYHSQQITYKTSLPTTYQGHKEINVWSPYVYG-NAVPVAPYNAVSLTQDQSSGIIPLMFKIDGRVRWKVGTFITGKYHLYVRC 729 RP +F + DA + F+ N L S + + RNPN R+G+YYD+ + Y Q+ ++ + YQGHK V + G N V + L D+ SGI + K+ VR+K + K ++C Sbjct: 78 RPNAVKFYVADANLNRFSFDPNNNLHYSLDLNFTIRNPNQRVGVYYDEFSVSGYYGDQRFG-SANVSSFYQGHKNTTVILTKIEGQNLVVLGDGARTDLKDDEKSGIYRINAKLRLSVRFKFWFIKSWKLKPKIKC 212 The following BLAST results are available for this feature:
BLAST of gene-KPL71_018619-mRNA1 vs. DB:SwissProt
Analysis Date: 2023-04-17 (BLAST: C. sinensis DVS_B v1.0) Total hits: 8 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >gene-KPL71_018619-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018619-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018619-mRNA1; organism=Citrus sinensis; type=mRNA; length=2442bpback to top protein sequence of gene-KPL71_018619-mRNA1_Citrus_sinensis_DVS_B_v1 >gene-KPL71_018619-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018619-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018619-mRNA1_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=209bpback to top mRNA from alignment at CM039175.1_Chr6_DVS_B:19738609..19741050+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2442bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:19738609..19741050+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:19738609..19741050+ >gene-KPL71_018619-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018619-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018619-mRNA1; organism=Citrus sinensis; type=CDS; length=630bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:19738609..19741050+ (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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