gene-KPL71_018627-mRNA2
Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of gene-KPL71_018627-mRNA2 vs. DB:SwissProt
Match: MTEF1_ARATH (Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF1 PE=2 SV=2) HSP 1 Score: 184.111 bits (466), Expect = 7.467e-51 Identity = 99/241 (41.08%), Postives = 151/241 (62.66%), Query Frame = 3 Query: 21 FQEKMLYLDSIGVDFFSLINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRA-SDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAE----VNKHTYLLSCSVEDKLIPRLQYFQK-MGFSKREATAMFRRFPQLFNYSVKDNYEPKLNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQFHRRL 725 F+EK++YL + VD + +P + SA ++ + S L++S + RI+ M P++LTS S+ILPV FL E ++ D+ + ISR PRLL+S+V +LRP L FL+++G +++T LL +VE LIP+++Y ++ +GF++ E M R P L YSV +N PK+ +F+ EM D+KELK FPQYFSFSLE +IKPRH+ + G+ PL+ +LK S+ QF+ L Sbjct: 33 FREKLIYLQDLNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDLLTSDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVGRDTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKVEFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQFNHWL 273
BLAST of gene-KPL71_018627-mRNA2 vs. DB:SwissProt
Match: MTEF5_ARATH (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF5 PE=1 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 7.668e-22 Identity = 67/233 (28.76%), Postives = 119/233 (51.07%), Query Frame = 3 Query: 39 YLDSIGV---DFFSLINDHPPIVSASLND-IKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGI---AEVNKHTYLLSCSVEDKLIPRLQYFQKMGFSKREATAMFRRFPQLFNYSVKDNYEPKLNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQFH 716 +L +G+ D +++ P I SL D +K T+ + +L ++ +I+S P ILT + FL + + + R+++R P ++ +V+ +LRPT+ + +S+ + +++ S+E L P ++F + GF E M R+ L+ +S+K+N PK +YF M EL +FPQ+F +SL+ RIKPR++ GV LN +L S +F Sbjct: 238 FLLDLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIISRFPAILTYSRQKLTSTVEFL-SQTGLTEEQIGRILTRCPNIMSYSVEDKLRPTMEYFRSLNVDVAVLLHRCPQTFGLSIESNLKPVTEFFLEKGFGLDEIGIMISRYGALYTFSLKENVMPKWDYFQT-MDYPKSELVKFPQFFGYSLQERIKPRYELVQRSGVRLLLNQVLSLSGIEFE 468
BLAST of gene-KPL71_018627-mRNA2 vs. DB:SwissProt
Match: MTEF9_ARATH (Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF9 PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.355e-21 Identity = 66/245 (26.94%), Postives = 126/245 (51.43%), Query Frame = 3 Query: 24 QEKMLYLDSIGV---DFFSLINDHPPIVSASL-NDIKSTVDLITSLDFAAAEFRRIVSMCPEILT-SRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFL-QSMG------IAEVNKHTYLLSCSVEDKLIPRLQYFQKMGFSKREATAMFRRFPQLFNYSVKDNYEPKLNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHQACVD-----KGVCFPLNVLLKTSEA 707 QE++ YL S+GV D ++ P I+ ++ N++K+ + + L ++ +IV+ P + + S + + P +L+ E + +D+ +V+ P++LV + FL + +G + V KH LL S++D +PR+ + + +G + + Q+ + S++DN +PK Y V E+ ++ L ++P Y S SL+ RI+PRH+ V+ KG FPL+ L+ E+ Sbjct: 220 QERLDYLLSVGVKHRDIKRMLLRQPQILQYTVENNLKAHISFLMGLGIPNSKIGQIVAATPSLFSYSVENSLRPTIRYLIEEVGIKETDVGKVVQLSPQILVQRLDITWNTRYMFLSKELGAPRDSVVKMVKKHPQLLHYSIDDGFLPRINFLRSIGMCNSDILKVLTSLTQVLSLSLEDNLKPKYMYLVNELNNEVHILTKYPMYLSLSLDQRIRPRHRFLVELKKVRKG-PFPLSSLVPNDES 463
BLAST of gene-KPL71_018627-mRNA2 vs. DB:SwissProt
Match: MTEF2_ARATH (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF2 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 5.216e-18 Identity = 68/246 (27.64%), Postives = 117/246 (47.56%), Query Frame = 3 Query: 21 FQEKMLYLDSIGV---DFFSLINDHPPIVSASLND-IKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQS-MGIAE------VNKHTYLLSCSVEDKLIPRLQYFQKMGFSKREATAMFRRFPQLFNYSVKDNYEPKLNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQFHRRL 725 ++K+ YL G+ + L+ P ++ S+ + K V L +RI+ + P + + L+E + + ++ + P LL +++ ++RP + FL + G+ + + LL CS+ KL P ++Y+ +G + M FP L Y+V DN PK Y M R L++L EFP++FS+SLE RI PRH V+ V F L +L ++ +F RR+ Sbjct: 352 MEKKINYLKEFGLSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYLGIPKEGMKRILVVKPILYCIDLEKTIAPKVRFLQEMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTRAGVTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNV-DNLRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTDEEFERRV 596 HSP 2 Score: 64.6994 bits (156), Expect = 3.160e-9 Identity = 49/232 (21.12%), Postives = 107/232 (46.12%), Query Frame = 3 Query: 18 EFQEKMLYLDSIGV--DFFS-LINDHPPIVSASLNDIKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAEVNKHTYL-----LSC-SVEDKLIPRLQYFQKMGFSKREATAMFRRFPQLFNYSVKDNYEPKLNYFVVEMGRDLKELKEF----PQYFSFSLENRIKPRHQACVDKGVCF 674 E E + YL+S GV D+ ++ P ++S S+ ++KS VD + +F +V P+I+ + ++ L+E ++ ++ R+++ +P L+ +++ R +P + + +GI + L L C +E + P++++ Q+MG M +FP L S+ P + + + G K++ + P S+ +++P + + G+ F Sbjct: 280 ELNEIVEYLESNGVRRDWMGYVVGRCPELLSFSMEEVKSRVDFFLKMGMNQNDFGTMVYDYPKIIGFFSFQVMEKKINYLKEFGLSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYLGIPKEGMKRILVVKPILYCIDLEKTIAPKVRFLQEMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTRAGVTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRF 511
BLAST of gene-KPL71_018627-mRNA2 vs. DB:SwissProt
Match: MTEF6_ARATH (Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF6 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 8.139e-15 Identity = 55/227 (24.23%), Postives = 108/227 (47.58%), Query Frame = 3 Query: 69 SLINDHPPIVSASLND-IKSTVDLITSLDFAAAEFRRIVSMCPEILT-SRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQS-MGIAE------VNKHTYLLSCSVEDKLIPRLQYFQKMGFSKREATAMFRRFPQLFNYSVKDNYEPKLNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQFHRR 722 S I PPI+S S+ + + + +L + +++ P +++ S + + + +FL + +V+ + P L+ +V RLRPT FL+S +G++E V LL V L P Y ++ GF + M +PQ+ SVK++ +P++ + V MGR + E+ +P++F L+ +++ R + + L +L + +FH + Sbjct: 97 SAITKFPPILSHSVEEKLCPLLAFFQALGVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDKRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATMVTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVESRFKLVKKNNIDCSLREMLDCNTKKFHEK 323
BLAST of gene-KPL71_018627-mRNA2 vs. DB:SwissProt
Match: MTEF4_MAIZE (Transcription termination factor MTERF4, chloroplastic OS=Zea mays OX=4577 GN=MTERF4 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.931e-13 Identity = 62/275 (22.55%), Postives = 115/275 (41.82%), Query Frame = 3 Query: 39 YLDSIGV---DFFSLINDHPPIVSASLNDIKST-VDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAE------VNKHTYLLSCSVEDKLIPRLQYFQKM------------------------------------GFSKREATAMFRRFPQLFNYSVKDNYEPKLNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQFHRRL 725 YL + V D ++ +P ++ L ST V + + + +++ PE+L R I+ F L + + R+I ++P +L ++ +++P + L +G+ + V ++ +L + DKL+ + F+ GF + + M PQL ++ D YF EM RDL+EL EFP +F++ +E+ ++PRH+ KG+ L LL S+A+F R+ Sbjct: 177 YLQGMDVRPTDVPRVLERYPELLGFKLEGTMSTSVAYLVGIGVGRRQVGSVITRFPEVLGMRVGKIIKPFVEHLEGIGLQRLAIARIIEKKPYVLGFGLQEKVKPNIEALVDIGVRKEALASIVMQYPDVLGLELRDKLVAQQSLFESSILVSREDFGRVLERMPQAISLGRAAVLKHVNFLTACGFMLSQVSKMVVACPQLLALNI-DIMRMNFEYFKNEMERDLEELVEFPAFFTYGIESTVRPRHEMVSRKGLTCSLAWLLNCSDAKFDERM 450
BLAST of gene-KPL71_018627-mRNA2 vs. DB:SwissProt
Match: MTEF4_ORYSJ (Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0404000 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 6.834e-13 Identity = 62/275 (22.55%), Postives = 114/275 (41.45%), Query Frame = 3 Query: 39 YLDSIGV---DFFSLINDHPPIVSASLNDIKST-VDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAE------VNKHTYLLSCSVEDKL------------------------------------IPRLQYFQKMGFSKREATAMFRRFPQLFNYSVKDNYEPKLNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQFHRRL 725 YL + V D ++ +P ++ L ST + + + A + +++ PE+L R I+ F L + + R+I ++P +L ++ +++P + L G+ + V ++ +L + DKL + + + GF + + M PQL ++ D + YF EM RDL+EL EFP +F++ LE+ ++PRH+ KG L LL S+A+F R+ Sbjct: 186 YLQGMDVRPHDVPRVLERYPELLGFKLEGTMSTSIAYLVGIGVARRQVGSVITRFPEVLGMRVGKIIKPFVEHLEGIGLQRLAIARIIEKKPYVLGFGLEDKVKPNIEALLEFGVRKEALAFIVAQYPDILGIELRDKLATQQSLFESSILVSSEDFGRVIERMPQAISLGRTAVLKHVNFLTSCGFLLSQVSKMVVACPQLLALNM-DIMKMSFEYFQNEMERDLEELVEFPAFFTYGLESTVRPRHEMVAKKGFTCSLAWLLNCSDAKFDERM 459
BLAST of gene-KPL71_018627-mRNA2 vs. DB:SwissProt
Match: MTEF8_ARATH (Transcription termination factor MTERF8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF8 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 2.767e-10 Identity = 57/221 (25.79%), Postives = 104/221 (47.06%), Query Frame = 3 Query: 87 PPIVSASLNDIKSTVDLITSL-DFAAAEFRRIVSMCPEIL-TSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAEVNKHTYLLSCSV----EDKLIPRLQYFQKMGFSKREATAMFRRFPQLFNYSVKDNYEPKLNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHQACV-DKGVCFPLNVLLKTSEAQFHRRLD 728 P I+S S+ + V+ + S + + +IV + P ++ TS+ + P FL +E + + + +S+ P L+++ + L L FL +G K +V D + + + G S + AM + PQ+ Y+ + E KL Y + MGR+++EL FP + + L++RIK R++ + +G LN LL S +F + D Sbjct: 276 PAILSYSVEHMNGQVEFLKSFAGLTSEQVFKIVHVFPNVISTSKERKLRPRIEFL-KECGFDSPGMFKFLSKAP-LILALSENNLSHKLGFLVKIGYKHRTKELAFAMGAVTRTSSDNMQRVIGLYLSYGLSFEDILAMSTKHPQVLQYNYT-SLEEKLEYLIEYMGREVEELLAFPAFLGYKLDSRIKHRYEEKLKSRGENMSLNKLLTVSAERFSKAAD 493
BLAST of gene-KPL71_018627-mRNA2 vs. DB:SwissProt
Match: MTEF4_ARATH (Transcription termination factor MTERF4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF4 PE=1 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 3.205e-8 Identity = 61/236 (25.85%), Postives = 110/236 (46.61%), Query Frame = 3 Query: 39 YLDSIGVDFFS---LINDHPPIVSASLND-IKSTVDLITSLDFAAAEFRRIVSMCPEILTSRASDILPVFTFLLREAKVNGSDLKRVISRRPRLLVSAVKTRLRPTLYFLQSMGIAEVNKHTYLLSCSVEDKLIPRLQYFQKMGFSKREATAMFRRFPQLFNYSV---KDNYEPKLNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHQACVDKGVCFPLNVLLKTSEAQFHRRL 725 YL+ +G+ + LI P I+ L+D +K V ++ + I++ PEI+ G DLK + + +LL SA+ L P + +G + + + +S S E ++ + + K GFS + M PQ+ ++ K ++E YF EM R L++L +FP +F++ LE+ +KPRH+ + KG+ L +L S+ +F +R+ Sbjct: 293 YLEVLGIPRLAAARLIEKRPHILGFELDDTVKPNVQILQDFNVRETSLPSIIAQYPEII---------------------GIDLKPKLDTQRKLLCSAI--HLNP-----EDLG-SLIERMPQFVSLS-ESPMLKHIDFLTKCGFSIDQTREMVIGCPQVLALNLGIMKLSFE----YFQKEMKRPLQDLVDFPAFFTYGLESTVKPRHKKIIKKGIKCSLAWMLNCSDEKFEQRM 494 HSP 2 Score: 58.5362 bits (140), Expect = 2.172e-7 Identity = 35/115 (30.43%), Postives = 54/115 (46.96%), Query Frame = 3 Query: 351 FLQSMG--IAEVNKHTYLLSCSVEDKLIPRLQYFQKMGFSKREATAMFRRFPQLFNYSVKDNYEPKLNYFVVEMGRDLKE------LKEFPQYFSFSLENRIKPRHQACVDKGVC 671 FL +G I ++N + +L CSV+ ++P L Y K+G K T RR+PQ+ + SV + P + Y G D+K L+ +P+ F LE + V GV Sbjct: 153 FLHKLGLTIEDINNYPLVLGCSVKKNMVPVLDYLGKLGVRKSTFTEFLRRYPQVLHSSVVIDLAPVVKYL---QGLDIKPSDVPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVA 264 The following BLAST results are available for this feature:
BLAST of gene-KPL71_018627-mRNA2 vs. DB:SwissProt
Analysis Date: 2023-04-17 (BLAST: C. sinensis DVS_B v1.0) Total hits: 9 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >gene-KPL71_018627-mRNA2_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018627-mRNA2_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018627-mRNA2; organism=Citrus sinensis; type=mRNA; length=2717bpback to top protein sequence of gene-KPL71_018627-mRNA2_Citrus_sinensis_DVS_B_v1 >gene-KPL71_018627-mRNA2_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018627-mRNA2_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018627-mRNA2_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=256bpback to top mRNA from alignment at CM039175.1_Chr6_DVS_B:19806879..19809595+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=2717bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:19806879..19809595+ (Citrus sinensisback to top Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:19806879..19809595+ >gene-KPL71_018627-mRNA2_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018627-mRNA2_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018627-mRNA2; organism=Citrus sinensis; type=CDS; length=771bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:19806879..19809595+ (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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