gene-KPL71_018634-mRNA2
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Transcript Overview
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of gene-KPL71_018634-mRNA2 vs. DB:SwissProt
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=CAF1-11 PE=2 SV=1) HSP 1 Score: 322.013 bits (824), Expect = 9.207e-110 Identity = 162/268 (60.45%), Postives = 207/268 (77.24%), Query Frame = 1 Query: 40 IVIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNI-RHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLG-SGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTG-LYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNDYELQKYANVLHGLELL 834
IVIR+V+ +NL SEF+ IR +++ YP ISMDTEFPGV+ + D ++ R +P YN LK+NVD L+LIQ+GLTLSD +GNLPDLG + YIWEFNF+DFD+ R HA DS+ELL+R GIDFE+NR G++S RFAEL+MSSGL+ N+ V+WVTFHSAYDFGYLVK LT+R LP L EF+ + FFG++VYDVKH++RFC LYGGLDRV ++L V R VGK HQAGSDSLLT AF +++D +F D +K+A VL+GLE+
Sbjct: 12 IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTWQAFQRMRDLYFVED-GAEKHAGVLYGLEVF 278
BLAST of gene-KPL71_018634-mRNA2 vs. DB:SwissProt
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=CAF1-9 PE=2 SV=1) HSP 1 Score: 315.079 bits (806), Expect = 4.622e-107 Identity = 164/267 (61.42%), Postives = 203/267 (76.03%), Query Frame = 1 Query: 40 IVIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSG-STYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCT-GLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNDYELQKYANVLHGLELL 834
+V REV+ NL SEFE I +ID YP ISMDTEFPGV+ + S++R +P Y LKANVD L+LIQ+GLTLSD GNLPDLG +IWEFNF+DFD+AR AHA DS+ELL+RQGIDFE+N G++S RFAEL+MSSGLV N++V+WVTFHSAYDFGYL+K LT+R LP L EF + V FGE+VYDVKH+++FC L+GGLDRV + L V R VGK HQAGSDSLLT HAF +++D +F D +K+A VL+GLE+
Sbjct: 17 VVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFK--SDLRFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLTWHAFQRMRDLYFVQDGP-EKHAGVLYGLEVF 280
BLAST of gene-KPL71_018634-mRNA2 vs. DB:SwissProt
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=CAF1-10 PE=2 SV=1) HSP 1 Score: 283.878 bits (725), Expect = 7.934e-95 Identity = 143/262 (54.58%), Postives = 194/262 (74.05%), Query Frame = 1 Query: 40 IVIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTGLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNDYELQKYANVLHGL 825
I+IREV+++NL+ EF IR ++D++ I+MDTEFPGVV++P + ++ + NY LK NVDLL LIQ+GLT SDE GNLP G+ + IW+FNF++F+I +A +S+ELL++ GIDF+KN E GID VRF EL+MSSG+VLN ++WVTFH YDFGYLVK LT + LP K ++F + V+F VYD+KHL+ FC GL+GGL+R+ + +GVER VG HQAGSDSLLTL +F K+K+++F E KY VL+GL
Sbjct: 10 IMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDL-NYRTLKENVDLLKLIQVGLTFSDENGNLPTCGT-DKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFKLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLTLGSFRKLKERYFPGSTE--KYTGVLYGL 265
BLAST of gene-KPL71_018634-mRNA2 vs. DB:SwissProt
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2) HSP 1 Score: 278.485 bits (711), Expect = 1.005e-92 Identity = 140/262 (53.44%), Postives = 189/262 (72.14%), Query Frame = 1 Query: 40 IVIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTGLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNDYELQKYANVLHGL 825
I IREV+ NL SE IR ++D +P ++MDTEFPG+V RP + + +Y LK NV++L +IQ+GLT SDE+GNLP G+ + Y IW+FNF++FD+ +A DS+ELL++ GIDF KN EFGIDS RFAELLMSSG+VLN++V WVTFHS YDFGYL+K LT + LPE + F + V+F +VYD+KHL++FC L+GGL+++ + L VER VG HQAGSDSLLT F K+++ F ++KY+ VL+GL
Sbjct: 10 IQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFK-TNTEYHYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFEMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSCTFRKLQENFFIG--SMEKYSGVLYGL 266
BLAST of gene-KPL71_018634-mRNA2 vs. DB:SwissProt
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1) HSP 1 Score: 264.618 bits (675), Expect = 2.562e-87 Identity = 139/262 (53.05%), Postives = 185/262 (70.61%), Query Frame = 1 Query: 40 IVIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTGLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNDYELQKYANVLHGL 825
I IREV+ NL E + IR ++D +P ++MDTEFPG+VVRP + + +Y LK NV++L +IQ+GLT S+E+GNLP G+ Y IW+FNF++FD+ ALDS+ELLK+ GID KN GIDS RFAELLMSSG+VLN++V WVTFHS YDFGYL+K LT + LP+ ++F + V+F VYD+KHL++FC L+GGL+++ + L VER VG HQAGSDSLLT F K+K+ F L KY+ VL+GL
Sbjct: 10 IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFK-SNADYHYETLKTNVNILKMIQLGLTFSNEQGNLPTCGT-DKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCTFRKLKENFFVG--PLHKYSGVLYGL 265
BLAST of gene-KPL71_018634-mRNA2 vs. DB:SwissProt
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=CAF1-2 PE=1 SV=1) HSP 1 Score: 263.848 bits (673), Expect = 8.286e-87 Identity = 143/281 (50.89%), Postives = 190/281 (67.62%), Query Frame = 1 Query: 1 MSDVXXXXXXXXRIVIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVR-----PDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTGLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNDYELQKYANVLHGLE 828
MS P P+ I IREV+ NL E I ID +P ++MDTEFPG+V + P+ N NY+ LKANV++L LIQ+GLTLSDE+GNLP G+ IW+FNF++F++ ALDS+ELL++ ID EKN E G+D+ RFAELLM SG+VLN + WVTFH YDFGYL+K L+ + LPE++S+F ++ FF VYD+K+L+ FCT LYGGL+++ + LGV+R VG SHQAGSDSLLTL F+K+K+ F L KY+ L GL+
Sbjct: 1 MSQAPNPEEEDDTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQC-IWQFNFREFNVISDMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEEISDFFDQMEKFF-PVVYDIKYLMGFCTNLYGGLEKIAELLGVKR-VGISHQAGSDSLLTLRTFIKMKEFFFTG--SLLKYSGFLFGLD 276
BLAST of gene-KPL71_018634-mRNA2 vs. DB:SwissProt
Match: CNOT8_HUMAN (CCR4-NOT transcription complex subunit 8 OS=Homo sapiens OX=9606 GN=CNOT8 PE=1 SV=1) HSP 1 Score: 221.861 bits (564), Expect = 3.398e-70 Identity = 121/261 (46.36%), Postives = 167/261 (63.98%), Query Frame = 1 Query: 43 VIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTGLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNDYELQKYANVLHGL 825
VI EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NVDLL +IQ+GLT ++E+G P S W+FNFK F++ ++ DS++LL G+ F+K+ E GID++ FAELLM+SG+VL +V W++FHS YDFGY+VK LT LPE+ EF + +FF +YDVK+L++ C L GGL V L ++R +G+ HQAGSDSLLT AF ++K+ F + + KY L+GL
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFR-SSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYP-----SGINTWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF-PSIYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGL 262
BLAST of gene-KPL71_018634-mRNA2 vs. DB:SwissProt
Match: CNOT8_MOUSE (CCR4-NOT transcription complex subunit 8 OS=Mus musculus OX=10090 GN=Cnot8 PE=1 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 4.130e-70 Identity = 121/261 (46.36%), Postives = 167/261 (63.98%), Query Frame = 1 Query: 43 VIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTGLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNDYELQKYANVLHGL 825
VI EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R Y L+ NVDLL +IQ+GLT ++E+G P S W+FNFK F++ ++ DS++LL G+ F+K+ E GID++ FAELLM+SG+VL +V W++FHS YDFGY+VK LT LPE+ EF + +FF +YDVK+L++ C L GGL V L ++R +G+ HQAGSDSLLT AF ++K+ F + + KY L+GL
Sbjct: 11 VICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFR-SSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYP-----SGINTWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF-PSIYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGL 262
BLAST of gene-KPL71_018634-mRNA2 vs. DB:SwissProt
Match: CNOT7_MOUSE (CCR4-NOT transcription complex subunit 7 OS=Mus musculus OX=10090 GN=Cnot7 PE=1 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 7.419e-69 Identity = 121/260 (46.54%), Postives = 166/260 (63.85%), Query Frame = 1 Query: 46 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTGLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNDYELQKYANVLHGL 825
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVDLL +IQ+GLT +E+G P S W+FNFK F++ +A DS+ELL GI F+K+ E GI++ FAELLM+SG+VL + V W++FHS YDFGYL+K LT LPE+ +F + +FF +YDVK+L++ C L GGL V + L +ER +G HQAGSDSLLT AF K+++ F + + KY L+GL
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFR-SNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGL 262
BLAST of gene-KPL71_018634-mRNA2 vs. DB:SwissProt
Match: CNOT7_BOVIN (CCR4-NOT transcription complex subunit 7 OS=Bos taurus OX=9913 GN=CNOT7 PE=2 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 7.419e-69 Identity = 121/260 (46.54%), Postives = 166/260 (63.85%), Query Frame = 1 Query: 46 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTGLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGNDYELQKYANVLHGL 825
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVDLL +IQ+GLT +E+G P S W+FNFK F++ +A DS+ELL GI F+K+ E GI++ FAELLM+SG+VL + V W++FHS YDFGYL+K LT LPE+ +F + +FF +YDVK+L++ C L GGL V + L +ER +G HQAGSDSLLT AF K+++ F + + KY L+GL
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFR-SNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGL 262 The following BLAST results are available for this feature:
BLAST of gene-KPL71_018634-mRNA2 vs. DB:SwissProt
Analysis Date: 2023-04-17 (BLAST: C. sinensis DVS_B v1.0) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >gene-KPL71_018634-mRNA2_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018634-mRNA2_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018634-mRNA2; organism=Citrus sinensis; type=mRNA; length=843bpback to top protein sequence of gene-KPL71_018634-mRNA2_Citrus_sinensis_DVS_B_v1 >gene-KPL71_018634-mRNA2_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018634-mRNA2_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018634-mRNA2_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=280bpback to top mRNA from alignment at CM039175.1_Chr6_DVS_B:19867611..19868453- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.> ID=; Name=; organism= ; type=; length=843bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:19867611..19868453- (Citrus sinensisback to top Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:19867611..19868453- >gene-KPL71_018634-mRNA2_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018634-mRNA2_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018634-mRNA2; organism=Citrus sinensis; type=CDS; length=843bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:19867611..19868453- (Citrus sinensisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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