gene-KPL71_018636-mRNA1 | Citrus Genome Database

Transcript Overview


Name	gene-KPL71_018636-mRNA1
Unique Name	gene-KPL71_018636-mRNA1_Citrus_sinensis_DVS_B_v1
Type	mRNA
Organism	Citrus sinensis (Sweet orange)
Sequence length	2314
Product	RRM domain-containing protein

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Citrus sinensis cv. Valencia DVS_B genome v1.0	2023-04-13
BLAST: C. sinensis DVS_B v1.0	2023-04-17
InterPro: C. sinensis DVS_B v1.0	2023-04-17

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
caudvbL154	Citrus australis genome v1.0 (UQ)	Citrus australis
caudvbL192	Citrus australis genome v1.0 (UQ)	Citrus australis
ccdvbL100	Citrus clementina genome v1.0 (JGI)	Citrus clementina
ccdvbL142	Citrus clementina genome v1.0 (JGI)	Citrus clementina
cledvbL085	Citrus limon cv. Eureka genome v1.0	Citrus limon
cledvbL113	Citrus limon cv. Eureka genome v1.0	Citrus limon
cledvbL200	Citrus limon cv. Eureka genome v1.0	Citrus limon
cledvbL242	Citrus limon cv. Eureka genome v1.0	Citrus limon
cmdvbL189	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmdvbL262	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
cmdvbL316	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
csdvbL117	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
csdvbL550	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
dvbdvbR117	Citrus sinensis cv. Valencia DVS_B genome v1.0	Citrus sinensis
dvadvbL304	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
dvbswoR196	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
dvbfhR438	Fortunella hindsii genome v1.0	Fortunella hindsii
dvbfhR471	Fortunella hindsii genome v1.0	Fortunella hindsii
dvbswoR214	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
dvbzkR314	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
dvbzkR336	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
csidvbL352	Citrus sinensis Valencia genome v1.0 (HZAU)	Citrus sinensis
dvbswR287	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis
dvbswR312	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis
cmjdvbL215	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
cmjdvbL275	Citrus maxima Cupi Majiayou v1.0 genome	Citrus maxima
dvbfhsR384	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
dvbfhsR409	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
csndvbL049	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
csndvbL074	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
csndvbL314	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
csndvbL337	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
csgdvbL056	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
csgdvbL210	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
csgdvbL216	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
abhdvbL178	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
abhdvbL223	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
cizdvbL101	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
cizdvbL128	Citrus ichangensis cv. ZGYCC v2.0 genome	Citrus ichangensis
clldvbL045	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
clldvbL195	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
clldvbL268	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
cmxdvbL235	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cmxdvbL287	Citrus maxima cv. XGF genome v1.0	Citrus maxima
cmmdvbL048	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
cmmdvbL321	Citrus mangshanensis cv. MSYG genome v1.0	Citrus mangshanensis
caadvbL254	Citrus australasica cv. AZM genome v1.0	Citrus australasica
caadvbL290	Citrus australasica cv. AZM genome v1.0	Citrus australasica
caadvbL349	Citrus australasica cv. AZM genome v1.0	Citrus australasica
chhdvbL307	Citrus hongheensis cv. HH genome v1.0	Citrus hongheensis
chhdvbL353	Citrus hongheensis cv. HH genome v1.0	Citrus hongheensis
dvbmpkR265	Murraya paniculata genome v1.0 (Kunming)	Murraya paniculata
dvbmpkR278	Murraya paniculata genome v1.0 (Kunming)	Murraya paniculata
clhdvbL215	Clausena lansium cv. HP genome v1.0	Clausena lansium
clhdvbL286	Clausena lansium cv. HP genome v1.0	Clausena lansium
dvbmpjR264	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
dvbmpjR272	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
aeadvbL031	Aegle marmelos cv. AEG genome v1.0	Aegle marmelos
aeadvbL201	Aegle marmelos cv. AEG genome v1.0	Aegle marmelos
cigdvbL248	Citropsis gilletiana cv. CGI genome v1.0	Citropsis gilletiana
cigdvbL318	Citropsis gilletiana cv. CGI genome v1.0	Citropsis gilletiana
cmhdvbL165	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
cmhdvbL208	Citrus maxima cv. Huazhouyou-tomentosa (HZY-T) genome v1.0	Citrus maxima
dvblssR287	Luvunga scandens cv. SYT genome v1.0	Luvunga scandens
dvblssR296	Luvunga scandens cv. SYT genome v1.0	Luvunga scandens
clxdvbL096	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
clxdvbL268	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
csjdvbL252	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
csjdvbL292	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
csjdvbL516	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
csjdvbL563	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
dvbneiR285	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
dvbneiR302	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
cradvbL240	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cradvbL278	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cradvbL401	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cradvbL433	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
cchdvbL194	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
cchdvbL231	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
ciudvbL172	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciudvbL235	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciudvbL390	Citrus inodora genome v1.0 (UQ)	Citrus inodora
ciudvbL430	Citrus inodora genome v1.0 (UQ)	Citrus inodora
cgadvbL189	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgadvbL223	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgadvbL409	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgadvbL448	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
cgudvbL168	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgudvbL202	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgudvbL362	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cgudvbL395	Citrus glauca genome v1.0 (UQ)	Citrus glauca
cumdvbL000	Citrus unshiu cv. Miyagawa Wase genome v1.0	Citrus unshiu
cumdvbL243	Citrus unshiu cv. Miyagawa Wase genome v1.0	Citrus unshiu
crcdvbL318	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
crcdvbL375	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
cstdvbL221	Citrus sinensis cv. Newhall T2T v2.0 genome	Citrus sinensis
cstdvbL269	Citrus sinensis cv. Newhall T2T v2.0 genome	Citrus sinensis
crmdvbL242	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
crmdvbL277	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
crmdvbL405	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
crmdvbL445	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
cridvbL198	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cridvbL256	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cridvbL420	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
cridvbL452	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata

Orthologs


Gene/Transcript	Assembly	Species
g12865.t1	Citrus australis genome v1.0 (UQ)	Citrus australis
gene-CUMW_005090-mRNA1	Citrus unshiu cv. Miyagawa Wase genome v1.0	Citrus unshiu
hap2-g17624.t1	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
g19299.t1_h2	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
Me_17925.1	Murraya paniculata genome v1.0 (Kunming)	Murraya paniculata
huyou00028729-RA	Citrus changshanensis cv. Huyou genome v1.0	Citrus changshanensis
Chh024510.1	Citrus hongheensis cv. HH genome v1.0	Citrus hongheensis
g20382.t1_h1	Citrus reticulata cv. IRM2 genome v1.0	Citrus reticulata
g19674.t2	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
LW004660.1	Citrus linwuensis cv. LW genome v1.0	Citrus linwuensis
g20790.t1	Citrus australasica cv. Rainbow genome v1.0	Citrus australasica
hap1-g17603.t1	Citrus glauca genome v1.0 (UQ)	Citrus glauca
Abu6g_008620.1	Atalantia buxifolia cv. HKC v2.0 genome	Atalantia buxifolia
JLX147030.2	Murraya paniculata cv. JLX genome v1.0	Murraya paniculata
HP165990.1	Clausena lansium cv. HP genome v1.0	Clausena lansium
Egl149940.1	Citrus australasica cv. AZM genome v1.0	Citrus australasica
evm.model.ctg147.457.1	Citrus limon cv. Xiangshui genome v1.0	Citrus limon
hap1-g18328.t1	Citrus inodora genome v1.0 (UQ)	Citrus inodora
sjg029290.1	Fortunella hindsii genome v1.0	Fortunella hindsii
NM_gene40885.t1	Citrus limon cv. Eureka genome v1.0	Citrus limon
CP6g000972.t1	Citrus reticulata 'Chachi' cv. Dazhongyoushen genome v1.0	Citrus reticulata
g18684.t1_h2	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
Ciclev10011213m	Citrus clementina genome v1.0 (JGI)	Citrus clementina
hap1-g17212.t2	Citrus garrawayi genome v1.0 (UQ)	Citrus garrawayi
Fh6g18980.1	Fortunella hindsii S3y-45 genome v2.0	Fortunella hindsii
NM_gene44096.t1	Citrus limon cv. Eureka genome v1.0	Citrus limon
hap2-g17911.t1	Citrus glauca genome v1.0 (UQ)	Citrus glauca
hap2-g19888.t1	Citrus inodora genome v1.0 (UQ)	Citrus inodora
g18145.t1_h1	Citrus reticulata cv. Murcott genome v1.0	Citrus reticulata
Pt6g008090.1	Poncirus trifoliata acc. ZK8 v1.0 (HZAU)	Poncirus trifoliata
Cg6g014830.2	Citrus maxima (C. grandis) genome v1.0	Citrus maxima
SYT156520.1	Luvunga scandens cv. SYT genome v1.0	Luvunga scandens
sjg208680.3	Fortunella hindsii genome v1.0	Fortunella hindsii

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
orange1.1g005657m.v1.1	Citrus sinensis genome v1.1 (JGI)	Citrus sinensis
EVM_prediction_chr3.1_tiancheng.1549	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis
EVM_prediction_HIC_ASM_8.778	Citrus sinensis cv. Gannanzao v1.0 genome	Citrus sinensis
drCitSine.Jinhong.1.0.HB6g09570.1	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
Cs6g_pb012750.2	Citrus sinensis Valencia genome v2.0 (HZAU)	Citrus sinensis
Cs_ont_6g009120.3	Citrus sinensis Di-Haploid Sweet Orange (DHSO) v3.0 (HZAU)	Citrus sinensis
Csi06G008960.1	Citrus sinensis cv. Neixiu genome v1.0	Citrus sinensis
CsN06G008230.1	Citrus sinensis cv. Newhall T2T v2.0 genome	Citrus sinensis
drCitSine.Jinhong.1.0.HA6g09660.1	Citrus sinensis cv. Jinhong genome v1.0	Citrus sinensis
gene-KPL70_018449-mRNA1	Citrus sinensis cv. Valencia DVS_A genome v1.0	Citrus sinensis
Cs6g13970.1	Citrus sinensis Valencia genome v1.0 (HZAU)	Citrus sinensis
EVM_prediction_chr3.2_youzi.1602	Citrus sinensis cv. Newhall v1.0 genome	Citrus sinensis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-KPL71_018636	gene-KPL71_018636_Citrus_sinensis_DVS_B_v1	Citrus sinensis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-gnl\|WGS:JAHMIT\|DVS6B01533.t01-exon1	rna-gnl\|WGS:JAHMIT\|DVS6B01533.t01-exon1_Citrus_sinensis_DVS_B_v1	Citrus sinensis	exon
rna-gnl\|WGS:JAHMIT\|DVS6B01533.t01-exon2	rna-gnl\|WGS:JAHMIT\|DVS6B01533.t01-exon2_Citrus_sinensis_DVS_B_v1	Citrus sinensis	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-gnl\|WGS:JAHMIT\|DVS6B01533.t01-CDS1	rna-gnl\|WGS:JAHMIT\|DVS6B01533.t01-CDS1_Citrus_sinensis_DVS_B_v1	Citrus sinensis	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
gene-KPL71_018636-mRNA1_Citrus_sinensis_DVS_B_v1	gene-KPL71_018636-mRNA1_Citrus_sinensis_DVS_B_v1	Citrus sinensis	polypeptide
gene-KPL71_018636-mRNA1_Citrus_sinensis_DVS_B_v1	gene-KPL71_018636-mRNA1_Citrus_sinensis_DVS_B_v1-protein	Citrus sinensis	polypeptide

Homology

The following BLAST results are available for this feature:

BLAST of gene-KPL71_018636-mRNA1 vs.

BLAST of gene-KPL71_018636-mRNA1 vs.
Analysis Date: 2023-04-17 (BLAST: C. sinensis DVS_B v1.0)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro: C. sinensis DVS_B v1.0
Date Performed: 2023-04-17

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 3..63 e-value: 8.7E-9 score: 35.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 1..70 score: 12.13395
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 243..258 e-value: 2.5E-4 score: 21.0
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 244..259 score: 10.163686
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..82 e-value: 1.0E-13 score: 53.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 543..563
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 269..299
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 447..468
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 401..428
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..235
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 327..344
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 256..468
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 373..389
None	No IPR available	PANTHER	PTHR48038	RIBONUCLEOPROTEIN RB97D	coord: 1..681
None	No IPR available	CDD	cd00590	RRM_SF	coord: 3..66 e-value: 3.75516E-11 score: 57.2928
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 235..265
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 2..95

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM039175.1_Chr6_DVS_B:19877389..19880513+
coding sequence from alignment at CM039175.1_Chr6_DVS_B:19877389..19880513+

mRNA sequence

>gene-KPL71_018636-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018636-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018636-mRNA1; organism=Citrus sinensis; type=mRNA; length=2314bp
CTAAACAAACTTCTTCCCGAAGGAATGCGTCGAAGGTTATAAGGAACCAA
GTTCCGCCAGTTGACCATAAGGCCAGAACAACGACCAAAAGAGTGAGCTA
AAACTGTTAACACAAAGGCTGAAAATAGTTCATCTTCAAATCACACTGCT
ATTGGCCTATTGATATTTCCTGAAATCATTTTACTGGAATATAGATGTCT
TTGTATATTGGTAATTTATCATCTCACACTTGTAGAGGTGAACTTGAAAG
AGTCTTCCAAAGGTTTGGATACTGTAATGTCCGGGTGAAAGATGGATATG
GGTTTGTGGTATATGAATCTGCTCCAAATGCAGAGAAAGCTTTGATCACA
CTACAGGGAAGGGATATCTGTGGGCAGCCATTAACTCTTATGTGGTCTAA
TAAACAGCCCAGGCCTTATAAAAGATTTTCAAAGGCTGCTAGGTCCTATG
AGCCACTATATGGAAGGAGTTCTAATAGACGAGAAGATTATACTGATAGA
AGATTGCATTCAAACAGCCGAAAATACTACAAATTTGGTAGAAGGGTTAA
TTCTGCTGATATGCTTGATGGAGACAGTAGCTACCATCAGGACAATATTA
AAGATTACATCCAGGAAGAGCATTGTGAATACAGAGAAGATTTGCCTGAT
GAAGGTGTGAATGATAAACCTAAACCGGTGGACAATGACAGATGGGCTGG
ACAATTACAGGACCAACCTAATGGCAACAGCATTGAAAATGGTATGGAAC
TAGACCGGTATGAATGTTACCGCGGATCTGATAGGAGGGATGAGCACAAA
ATCCATCACATTGCCTATTCTGATGGTTCTCATGTTCCACAAAGCTCTCA
GGATGTATTGACGAGGGGTCATCTTTCTGAGGCACCTTTAGACCCTTCTA
ATCATTCAAAACCCCAGCTAACTTGCTACAGTTGTGGAGGCTCAGGCCAC
AAAATGCGAAATTGTCCCAGGCAAATTACCTCACAAAGAAAGTTCAAGAG
GCTTGGGCATAGGCATGATGATGACATTAAAAGAAGCTGTAGAGCTGAAA
GCAATTTGGAAAGATATGAAGCAGGTTCTCAGAGAGAGCAGCGGCCTTAT
AGGGACTCTATATCAGTTAGTGGACTTGGGGATGAGGGGAAAGCTTCTGG
TTCTGGAAGGCATCAAAGGCTGATAAAGAATAGGAGCTCCAGTGAGGCAA
AGGAAGGTGTGAGGGCCAGAAAGGACCATGAAGCGAAGAAGCGAAGGAGG
AATTTTGGATCTCCAAACAAACACAgtgaaaagaaagcaaaaaggTCAGT
TTCATTGTCTCTTCACTCTGACTATGCTGAATCCGGATCACACTCGACTT
CTCGTTCTCCGAAACCTGTTCCAAAGTTTGGTTTGCGCTCTAGATCGAGA
TTGGCATCTTCTAGATCATATTCTTTTacttctaattcaaggtccaGTTC
AACACCTCACTATTCTAGATCCACCAGCTCTAAGTCTAGATCAAGATCGG
ACTCCCATAAATCCTTGCCTTTATCTGAGTCCCTTGGCGAGCCTTTACCA
TCCTCACCAAATAAGGAGCAGTCTAATCTGAAAGGAACTTCAGCTAAGAC
TGTTATTCCTGAATCTAAGGAAATTCTAGTTGAGCAAGCTCTACCTTGTG
ACGTTTCAGAGACTGCTGAACTGGAAAATAACACATTGGTGGCGAAAAGT
GATAAGGTGGTTTCATCCTCCGAAGTGGAAAATGATATGGATAAAAACCA
GCATATGCAGAGGGATTGGAATGACAACCTGATGATTTCAACGTCACTGC
TTGACATAGCTAATCACAGTACACATCCGTCTGAGAAAGACACACTTAAT
GCTAGAAGTCTGTCTTCAGAAACCTTGAAAGAGACAATGGAACATCAAAA
TTCTGATGTATCGGAGATCGTGCATAAGCCATCATCAATTAAGAACTCTA
ATTCAGAAGCTCCTGTCAGTTTGCACTCTGCCTGTTCAACAAGCATATCC
TCTGATGAGATGTACATGGTTCTGAAGCATTATGGCCTGGaacttgatga
aaatgaaaggaatTTACCTCCACAGGCTTATTTTGGTTCTGCTCGCTTAT
GGCCTTGGGAGATAATCTACTATAGGAGGTTGAAGAAGGGCCCTATATCA
ATTGAGAATTATGCCAGGCGAGTTGCTCAGAATCAGGAATTTGGAATTGT
TGATAAGTATGTAAGAAGCAGTAGTGGATGGGGAGAACTTGGTCAGGACT
AATACTTGAAAGATTTTATGTATGATAGCATCTTAGGTTTTTGCTCGACC
AGACTCTGAGTATG

protein sequence of gene-KPL71_018636-mRNA1_Citrus_sinensis_DVS_B_v1

>gene-KPL71_018636-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018636-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018636-mRNA1_Citrus_sinensis_DVS_B_v1; organism=Citrus sinensis; type=polypeptide; length=685bp
MSLYIGNLSSHTCRGELERVFQRFGYCNVRVKDGYGFVVYESAPNAEKAL
ITLQGRDICGQPLTLMWSNKQPRPYKRFSKAARSYEPLYGRSSNRREDYT
DRRLHSNSRKYYKFGRRVNSADMLDGDSSYHQDNIKDYIQEEHCEYREDL
PDEGVNDKPKPVDNDRWAGQLQDQPNGNSIENGMELDRYECYRGSDRRDE
HKIHHIAYSDGSHVPQSSQDVLTRGHLSEAPLDPSNHSKPQLTCYSCGGS
GHKMRNCPRQITSQRKFKRLGHRHDDDIKRSCRAESNLERYEAGSQREQR
PYRDSISVSGLGDEGKASGSGRHQRLIKNRSSSEAKEGVRARKDHEAKKR
RRNFGSPNKHSEKKAKRSVSLSLHSDYAESGSHSTSRSPKPVPKFGLRSR
SRLASSRSYSFTSNSRSSSTPHYSRSTSSKSRSRSDSHKSLPLSESLGEP
LPSSPNKEQSNLKGTSAKTVIPESKEILVEQALPCDVSETAELENNTLVA
KSDKVVSSSEVENDMDKNQHMQRDWNDNLMISTSLLDIANHSTHPSEKDT
LNARSLSSETLKETMEHQNSDVSEIVHKPSSIKNSNSEAPVSLHSACSTS
ISSDEMYMVLKHYGLELDENERNLPPQAYFGSARLWPWEIIYYRRLKKGP
ISIENYARRVAQNQEFGIVDKYVRSSSGWGELGQD

mRNA from alignment at CM039175.1_Chr6_DVS_B:19877389..19880513+

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

> ID=; Name=; organism= ; type=; length=3125bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:19877389..19880513+ (Citrus sinensis
CTAAACAAACTTCTTCCCGAAGGAATGCGTCGAAGGTTATAAGGAACCAA
GTTCCGCCAGTTGACCATAAGGCCAGAACAACGACCAAAAGAGTGAGCTA
AAACTGTTAACACAAAGGCTGAAAATAGTTCATCTTCAAATCACACTGCT
ATTGGCCTATTGATATTTCCTGAAATCATTTTACTGGAATATAGGTATAG
GGTTCCTGAAATCTGGGAGGGATCTTCAGGTTTGTAATTTCTGTTATCAA
AATATCTGTATTGTCATTTGGCTATATTTTTATGCAGATCATCTGTTTGA
TAAAATTCGTAAGAGAatcaagtaaaagaaaaacgaACACTTTCTGCAAC
ATGTATGTTTTCTGCAACATGTATGTATACAGAGATTAAAAACTTTATGG
GTACTTTTTCCATATGGAATTGTTAAAATATTCGACTCTTGTTGCTttct
ttgattaaaaaaaaaaaaaaatagctgCAAATTTCCAAGCACGATTAGTT
TCAATGTCAAATGTATTCCATAAGTGATTCATTGAACTGATATTTTTTGG
GGCTTGCTCCTGTTGGTATGTGAATCTGCTTGACTAGATCGTTCCCAGCA
TGGATGCTAATAATAACATTTAGTTGGGTACACTTAGTTTTTCAATTGGA
AAAATGAAGACTAAGTAATTAGCTGTAATTGTTGTTGGAATGAGCTGCAT
TTGCATTATAATTGCAGTGTTAGAGAGATGAATGGTGCATCTTCCAAGTT
TGCtacttcattaaaaaaaaatatgcatatGTACATATTAGCTGCTAGAA
TAGAGAGAATCATGCCCTATGATGAAAGAAggctataattatttttttag
tgtgtttGTTTTGTAGAAAATgaagtgtaattttttttatactgtgatta
aaatattcaagaaTCACTTTAGTTTTCTCACACTATTTCTAGATTTTTGG
GTCTGCTTGTGGGTAAAACAAGtgaattttttcttccaaaatgTTTTGGT
TGCAGATGTCTTTGTATATTGGTAATTTATCATCTCACACTTGTAGAGGT
GAACTTGAAAGAGTCTTCCAAAGGTTTGGATACTGTAATGTCCGGGTGAA
AGATGGATATGGGTTTGTGGTATATGAATCTGCTCCAAATGCAGAGAAAG
CTTTGATCACACTACAGGGAAGGGATATCTGTGGGCAGCCATTAACTCTT
ATGTGGTCTAATAAACAGCCCAGGCCTTATAAAAGATTTTCAAAGGCTGC
TAGGTCCTATGAGCCACTATATGGAAGGAGTTCTAATAGACGAGAAGATT
ATACTGATAGAAGATTGCATTCAAACAGCCGAAAATACTACAAATTTGGT
AGAAGGGTTAATTCTGCTGATATGCTTGATGGAGACAGTAGCTACCATCA
GGACAATATTAAAGATTACATCCAGGAAGAGCATTGTGAATACAGAGAAG
ATTTGCCTGATGAAGGTGTGAATGATAAACCTAAACCGGTGGACAATGAC
AGATGGGCTGGACAATTACAGGACCAACCTAATGGCAACAGCATTGAAAA
TGGTATGGAACTAGACCGGTATGAATGTTACCGCGGATCTGATAGGAGGG
ATGAGCACAAAATCCATCACATTGCCTATTCTGATGGTTCTCATGTTCCA
CAAAGCTCTCAGGATGTATTGACGAGGGGTCATCTTTCTGAGGCACCTTT
AGACCCTTCTAATCATTCAAAACCCCAGCTAACTTGCTACAGTTGTGGAG
GCTCAGGCCACAAAATGCGAAATTGTCCCAGGCAAATTACCTCACAAAGA
AAGTTCAAGAGGCTTGGGCATAGGCATGATGATGACATTAAAAGAAGCTG
TAGAGCTGAAAGCAATTTGGAAAGATATGAAGCAGGTTCTCAGAGAGAGC
AGCGGCCTTATAGGGACTCTATATCAGTTAGTGGACTTGGGGATGAGGGG
AAAGCTTCTGGTTCTGGAAGGCATCAAAGGCTGATAAAGAATAGGAGCTC
CAGTGAGGCAAAGGAAGGTGTGAGGGCCAGAAAGGACCATGAAGCGAAGA
AGCGAAGGAGGAATTTTGGATCTCCAAACAAACACAgtgaaaagaaagca
aaaaggTCAGTTTCATTGTCTCTTCACTCTGACTATGCTGAATCCGGATC
ACACTCGACTTCTCGTTCTCCGAAACCTGTTCCAAAGTTTGGTTTGCGCT
CTAGATCGAGATTGGCATCTTCTAGATCATATTCTTTTacttctaattca
aggtccaGTTCAACACCTCACTATTCTAGATCCACCAGCTCTAAGTCTAG
ATCAAGATCGGACTCCCATAAATCCTTGCCTTTATCTGAGTCCCTTGGCG
AGCCTTTACCATCCTCACCAAATAAGGAGCAGTCTAATCTGAAAGGAACT
TCAGCTAAGACTGTTATTCCTGAATCTAAGGAAATTCTAGTTGAGCAAGC
TCTACCTTGTGACGTTTCAGAGACTGCTGAACTGGAAAATAACACATTGG
TGGCGAAAAGTGATAAGGTGGTTTCATCCTCCGAAGTGGAAAATGATATG
GATAAAAACCAGCATATGCAGAGGGATTGGAATGACAACCTGATGATTTC
AACGTCACTGCTTGACATAGCTAATCACAGTACACATCCGTCTGAGAAAG
ACACACTTAATGCTAGAAGTCTGTCTTCAGAAACCTTGAAAGAGACAATG
GAACATCAAAATTCTGATGTATCGGAGATCGTGCATAAGCCATCATCAAT
TAAGAACTCTAATTCAGAAGCTCCTGTCAGTTTGCACTCTGCCTGTTCAA
CAAGCATATCCTCTGATGAGATGTACATGGTTCTGAAGCATTATGGCCTG
GaacttgatgaaaatgaaaggaatTTACCTCCACAGGCTTATTTTGGTTC
TGCTCGCTTATGGCCTTGGGAGATAATCTACTATAGGAGGTTGAAGAAGG
GCCCTATATCAATTGAGAATTATGCCAGGCGAGTTGCTCAGAATCAGGAA
TTTGGAATTGTTGATAAGTATGTAAGAAGCAGTAGTGGATGGGGAGAACT
TGGTCAGGACTAATACTTGAAAGATTTTATGTATGATAGCATCTTAGGTT
TTTGCTCGACCAGACTCTGAGTATG

Coding sequence (CDS) from alignment at CM039175.1_Chr6_DVS_B:19877389..19880513+

>gene-KPL71_018636-mRNA1_Citrus_sinensis_DVS_B_v1 ID=gene-KPL71_018636-mRNA1_Citrus_sinensis_DVS_B_v1; Name=gene-KPL71_018636-mRNA1; organism=Citrus sinensis; type=CDS; length=2058bp; location=Sequence derived from: CM039175.1_Chr6_DVS_B:19877389..19880513+ (Citrus sinensis
ATGTCTTTGTATATTGGTAATTTATCATCTCACACTTGTAGAGGTGAACT
TGAAAGAGTCTTCCAAAGGTTTGGATACTGTAATGTCCGGGTGAAAGATG
GATATGGGTTTGTGGTATATGAATCTGCTCCAAATGCAGAGAAAGCTTTG
ATCACACTACAGGGAAGGGATATCTGTGGGCAGCCATTAACTCTTATGTG
GTCTAATAAACAGCCCAGGCCTTATAAAAGATTTTCAAAGGCTGCTAGGT
CCTATGAGCCACTATATGGAAGGAGTTCTAATAGACGAGAAGATTATACT
GATAGAAGATTGCATTCAAACAGCCGAAAATACTACAAATTTGGTAGAAG
GGTTAATTCTGCTGATATGCTTGATGGAGACAGTAGCTACCATCAGGACA
ATATTAAAGATTACATCCAGGAAGAGCATTGTGAATACAGAGAAGATTTG
CCTGATGAAGGTGTGAATGATAAACCTAAACCGGTGGACAATGACAGATG
GGCTGGACAATTACAGGACCAACCTAATGGCAACAGCATTGAAAATGGTA
TGGAACTAGACCGGTATGAATGTTACCGCGGATCTGATAGGAGGGATGAG
CACAAAATCCATCACATTGCCTATTCTGATGGTTCTCATGTTCCACAAAG
CTCTCAGGATGTATTGACGAGGGGTCATCTTTCTGAGGCACCTTTAGACC
CTTCTAATCATTCAAAACCCCAGCTAACTTGCTACAGTTGTGGAGGCTCA
GGCCACAAAATGCGAAATTGTCCCAGGCAAATTACCTCACAAAGAAAGTT
CAAGAGGCTTGGGCATAGGCATGATGATGACATTAAAAGAAGCTGTAGAG
CTGAAAGCAATTTGGAAAGATATGAAGCAGGTTCTCAGAGAGAGCAGCGG
CCTTATAGGGACTCTATATCAGTTAGTGGACTTGGGGATGAGGGGAAAGC
TTCTGGTTCTGGAAGGCATCAAAGGCTGATAAAGAATAGGAGCTCCAGTG
AGGCAAAGGAAGGTGTGAGGGCCAGAAAGGACCATGAAGCGAAGAAGCGA
AGGAGGAATTTTGGATCTCCAAACAAACACAgtgaaaagaaagcaaaaag
gTCAGTTTCATTGTCTCTTCACTCTGACTATGCTGAATCCGGATCACACT
CGACTTCTCGTTCTCCGAAACCTGTTCCAAAGTTTGGTTTGCGCTCTAGA
TCGAGATTGGCATCTTCTAGATCATATTCTTTTacttctaattcaaggtc
caGTTCAACACCTCACTATTCTAGATCCACCAGCTCTAAGTCTAGATCAA
GATCGGACTCCCATAAATCCTTGCCTTTATCTGAGTCCCTTGGCGAGCCT
TTACCATCCTCACCAAATAAGGAGCAGTCTAATCTGAAAGGAACTTCAGC
TAAGACTGTTATTCCTGAATCTAAGGAAATTCTAGTTGAGCAAGCTCTAC
CTTGTGACGTTTCAGAGACTGCTGAACTGGAAAATAACACATTGGTGGCG
AAAAGTGATAAGGTGGTTTCATCCTCCGAAGTGGAAAATGATATGGATAA
AAACCAGCATATGCAGAGGGATTGGAATGACAACCTGATGATTTCAACGT
CACTGCTTGACATAGCTAATCACAGTACACATCCGTCTGAGAAAGACACA
CTTAATGCTAGAAGTCTGTCTTCAGAAACCTTGAAAGAGACAATGGAACA
TCAAAATTCTGATGTATCGGAGATCGTGCATAAGCCATCATCAATTAAGA
ACTCTAATTCAGAAGCTCCTGTCAGTTTGCACTCTGCCTGTTCAACAAGC
ATATCCTCTGATGAGATGTACATGGTTCTGAAGCATTATGGCCTGGaact
tgatgaaaatgaaaggaatTTACCTCCACAGGCTTATTTTGGTTCTGCTC
GCTTATGGCCTTGGGAGATAATCTACTATAGGAGGTTGAAGAAGGGCCCT
ATATCAATTGAGAATTATGCCAGGCGAGTTGCTCAGAATCAGGAATTTGG
AATTGTTGATAAGTATGTAAGAAGCAGTAGTGGATGGGGAGAACTTGGTC
AGGACTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR001878	Znf_CCHC
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR036875	Znf_CCHC_sf
IPR035979	RBD_domain_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0008270	zinc ion binding
GO:0003676	nucleic acid binding